rna9149, rna9149 (mRNA) Nannochloropsis gaditana

Overview
Namerna9149
Unique Namerna9149
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length636
Alignment locationKK037251.1:447148..448405 -

Link to JBrowse

Properties
Property NameValue
Productwd sam and u-box domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100564g2.6264.mrna
Orig protein idgnl|cribi|Naga_100564g2.6264
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:447148..448405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100564g2gene8874Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9149rna9149-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21554.1cds9119Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9149 ID=rna9149|Name=rna9149|organism=Nannochloropsis gaditana|type=mRNA|length=636bp
CGTTTCAAACACTTCTCATCATTACTGTGTCCCAGTCTAGGCGGTTGAAG
ATGCACAGAAGGAGGGCGGCAAGGGCCGCGGCGCTTGTCCTTTGTCTCCT
GGCAGTCATATGCGACCTCCCGGGAGCCTGGGGCAAGGAGGGGAAGAACC
GTCCCATGTTCTATGATGGCGGGGCTTGGCACGATTTGGATGAGGATCCA
CGCCCGGGGGAGCCCCTACCGTACCCCCCAGACTCGGACTCGTGGCAGCG
ACCTGACACCACGGTCCATGTGCAGATCTCCTCCTTCCGGGATCATCGGT
GTCCAAAGACCCTGTACAATCTGTTCACCAAGGCCAAGTTTCCGGGCCGG
GTCCGCGTGGGTGTGGTCCAGCAGAACGAGAAGGACGACGTCGGTGCGCA
GGGAGGGCGGGCCTGTGTCGCAGCCTGGAATCTCGCTCACGCCTCTCCCC
CCCCCCAGACTGTCTCTATACGTACTGCAGCATGATCAAGGAGGAGCGAG
GCCTTCACCCCCTGGCCCAAGCCCCCACGAGCAGCCGCGGGGCGCAGACC
ATTTTGCAGAATTGCCCTCACGCGGATCAGGTGAAGATGATGCGGGTTCC
GGCCAGCGGGGCCAAGGGGCCTACGTACGGGCGGTG
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protein sequence of rna9149

>rna9149-protein ID=rna9149-protein|Name=rna9149|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSY
ERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEE
RGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEE
AEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA
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mRNA from alignment at KK037251.1:447148..448405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9149 ID=rna9149|Name=rna9149|organism=Nannochloropsis gaditana|type=mRNA|length=1258bp|location=Sequence derived from alignment at KK037251.1:447148..448405- (Nannochloropsis gaditana)
GCAGTGCATTGCATAATAAAAGTGTTAAATCTTCCTTTGTGAATACTTTT
CAACCCGCCAACATCGGCGTGTTGGCCTCATTTCGACCAAGAGATCCCAG
ATTGCTCTCTATAGCAAAATTGCAATGCGGCACTCTGGCGCATGCCGACG
TTGTTCGAAAGACGCTCTCCCACCGTGCCTTGATTGTGAAAACAAACCTG
CTTGAAGACAACAAATCGATGTGGTTAGCCTCTATAATGACCTCTCATTA
CATTCCGATGCTTTGTCTTTGGGCTATCGATGACCAGCTTTACGTTGAGT
CCTAGGCATCGCGCCCCTCGGCCCATTCTGTATATCGACATAAAGCGAAT
CCAAGCAAATGCAAGCCCACGACTCGACTGCAACTACAACATCGACAACC
AATGCACAAGTGACGACAGTGTCCGAAGCAGTCTTTGATCTCCTTCTCTG
TCCAATTTCCCGTTGCATCATGAGGTGAGAAACACAAGGTTATCTATCGC
CTTTGCTTTTGCACTTCTTTACAAAGGGGGTAAAGAAGGATCGCACCTGC
AGCGGCGTCCTCTTCTTCAATCTTTTACTAGTCAATACAGCGGACATGAC
ATCATCTTTGTGCTTTCTGAACCATTCATTCCCAACTCGATTTTCCTTGT
GGCTTGTATACGAGACAAAGAGATGCAACGTATCTCTCTATGCGCGCGGA
CAGCTCCTTTCATACTCTTTCTTGTTGTTGTTGTACAGACGCTTCTTTCC
ATCCTTTTCAAGCGATTCCCGTGCCTTTCTCCCACTTTCCTTCCCCTTTC
GACTCCCGGTCCCCAGAGACCCTGTGCTCACATGCGACGGCTACAGCTAT
GAACGAGAGTCGATAGAGGCCTGGTTTGCGCGAGGTCATCGCACCTCTCC
AATGACAGGGCTGGTACTACCCTCCCGCACGCTTTGGTCTAACTTGGTGC
TCAAGAACCTGAGCCGAGCCCTTGAGCCCCTCAGTGCCGAGGAGGAAGAG
AGAGGGAAGGCTCCTCGGGAGAGCGAGGGGCAGCAGGCAGGGGTGTGGGT
AGGACACAGCCCTGAAGGCACGAGTAGTGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGACGGGGAGGAGAGCGGGTCGGATTCGTCGGAGGAGGAA
GCCGAGGCGCAGGGAGTGCTGCGTGTCCTAAGTGCCTTGCCTGCCCGTTC
CCGCTGGCAGAGTAGGCGAAGGGGGCGGGTGGGAGGGGTGGTGACAAGCC
GCGCGTAG
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Coding sequence (CDS) from alignment at KK037251.1:447148..448405-

>rna9149 ID=rna9149|Name=rna9149|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at KK037251.1:447148..448405- (Nannochloropsis gaditana)
AGACCCTGTGCTCACATGCGACGGCTACAGCTATGAACGAGAGTCGATAG
AGGCCTGGTTTGCGCGAGGTCATCGCACCTCTCCAATGACAGGGCTGGTA
CTACCCTCCCGCACGCTTTGGTCTAACTTGGTGCTCAAGAACCTGAGCCG
AGCCCTTGAGCCCCTCAGTGCCGAGGAGGAAGAGAGAGGGAAGGCTCCTC
GGGAGAGCGAGGGGCAGCAGGCAGGGGTGTGGGTAGGACACAGCCCTGAA
GGCACGAGTAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGG
GGAGGAGAGCGGGTCGGATTCGTCGGAGGAGGAAGCCGAGGCGCAGGGAG
TGCTGCGTGTCCTAAGTGCCTTGCCTGCCCGTTCCCGCTGGCAGAGTAGG
CGAAGGGGGCGGGTGGGAGGGGTGGTGACAAGCCGCGCGTAGATGCAAGC
CCACGACTCGACTGCAACTACAACATCGACAACCAATGCACAAGTGACGA
CAGTGTCCGAAGCAGTCTTTGATCTCCTTCTCTGTCCAATTTCCCGTTGC
ATCATGAGAGACCCTGTGCTCACATGCGACGGCTACAGCTATGAACGAGA
GTCGATAGAGGCCTGGTTTGCGCGAGGTCATCGCACCTCTCCAATGACAG
GGCTGGTACTACCCTCCCGCACGCTTTGGTCTAACTTGGTGCTCAAGAAC
CTGAGCCGAGCCCTTGAGCCCCTCAGTGCCGAGGAGGAAGAGAGAGGGAA
GGCTCCTCGGGAGAGCGAGGGGCAGCAGGCAGGGGTGTGGGTAGGACACA
GCCCTGAAGGCACGAGTAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAAGACGGGGAGGAGAGCGGGTCGGATTCGTCGGAGGAGGAAGCCGAGGC
GCAGGGAGTGCTGCGTGTCCTAAGTGCCTTGCCTGCCCGTTCCCGCTGGC
AGAGTAGGCGAAGGGGGCGGGTGGGAGGGGTGGTGACAAGCCGCGCGTAG
ATGCAAGCCCACGACTCGACTGCAACTACAACATCGACAACCAATGCACA
AGTGACGACAGTGTCCGAAGCAGTCTTTGATCTCCTTCTCTGTCCAATTT
CCCGTTGCATCATGAG
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Synonyms
Publications