EWM21554.1, cds9119 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|585101803|gb|EWM21554.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 368.237 bits (944), Expect = 8.709e-129 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 Query: 1 MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA 185 MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA Sbjct: 1 MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA 185
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1126281694|ref|XP_019661559.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Ailuropoda melanoleuca]) HSP 1 Score: 82.8037 bits (203), Expect = 4.944e-16 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 158 KVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1111076832|ref|XP_019312818.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Panthera pardus] >gi|1126447192|ref|XP_019693707.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X4 [Felis catus]) HSP 1 Score: 82.0333 bits (201), Expect = 7.581e-16 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 158 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|149047776|gb|EDM00392.1| (WD repeat, SAM and U-box domain containing 1, isoform CRA_b [Rattus norvegicus]) HSP 1 Score: 77.411 bits (189), Expect = 1.386e-15 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0 Query: 20 TVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 ++S + D +CPI+R +M+DPV+ DGYSYERE++E+W + RTSPMT L LPS L N LK ++R LE Sbjct: 3 SLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLE 76
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1212218106|ref|XP_021558781.1| (WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Neomonachus schauinslandi]) HSP 1 Score: 80.4925 bits (197), Expect = 2.728e-15 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M++PV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 158 KVKTLSSGIPDEFLCPITRELMKEPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|149639594|ref|XP_001510072.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus] >gi|620978452|ref|XP_007669346.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus] >gi|620978454|ref|XP_007669347.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus]) HSP 1 Score: 82.8037 bits (203), Expect = 3.237e-15 Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 0 Query: 15 NAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 N ++ ++S + D LCPI+R +M+DPV+ DGYSYE+E++E WF++ RTSPMT LVLPS L N LK ++R LE Sbjct: 394 NIKMDSLSSGIPDEFLCPITRELMKDPVIAADGYSYEKEAMENWFSKKKRTSPMTNLVLPSLILTPNRTLKMAINRWLE 472
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|62702115|gb|AAX93043.1| (unknown, partial [Homo sapiens]) HSP 1 Score: 80.1073 bits (196), Expect = 3.480e-15 Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V ++S + D +CPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK ++R LE Sbjct: 139 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLE 215
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1111076818|ref|XP_019312786.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Panthera pardus] >gi|1111076830|ref|XP_019312813.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Panthera pardus]) HSP 1 Score: 81.6481 bits (200), Expect = 6.176e-15 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 305 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 381
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|859765992|ref|XP_012907420.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X4 [Mustela putorius furo]) HSP 1 Score: 81.6481 bits (200), Expect = 6.841e-15 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 373 KVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 449
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1126447188|ref|XP_019693705.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Felis catus] >gi|1126447190|ref|XP_019693706.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Felis catus]) HSP 1 Score: 81.2629 bits (199), Expect = 7.024e-15 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92 +V T+S + D LCPI+R +M+DPV+ DGYSYE+E++E W ++ RTSPMT LVLPS L N LK +SR LE Sbjct: 305 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 381 The following BLAST results are available for this feature:
BLAST of EWM21554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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