rna9130, rna9130 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9130
Unique Name	rna9130
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	234
Alignment location	KK037251.1:401588..403720 -

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Properties


Property Name	Value
Product	fibroblast growth factor intracellular binding protein
Orig transcript id	gnl\|cribi\|Naga_100012g81.1968.mrna
Orig protein id	gnl\|cribi\|Naga_100012g81.1968
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:401588..403720 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g81	gene8853	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9130	rna9130-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21636.1	cds9100	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:401588..403720-
coding sequence from alignment at KK037251.1:401588..403720-

mRNA sequence

>rna9130 ID=rna9130|Name=rna9130|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGCCGGCTTCATTTCCTAGTCCTGAGCATCCACCTAAGCAGCCGAGGTA
TCAAGCCTTGTTGAACAGCAAGTTTGGGCGAGCACTGGTACTTGCCGAGG
TAGCCACACTCGCGGGAACAGGGGTCCTATACTATACTCTCACGACAAGC
GAGGACGCAAGAAACAAACTTGCCTATCGGATGCCCTGGGTAATGGATGT
TTTCCACAAAGTTACGCAGGATAAATACAAATAG

protein sequence of rna9130

>rna9130-protein ID=rna9130-protein|Name=rna9130|organism=Nannochloropsis gaditana|type=polypeptide|length=681bp
MCNSREHNLLFCLHASSPIRVPLNLISRTALHVMDEDGCFDVCVAEPDPI
EVNSFKLWLQGLSPESAARRRVNEIFSVLRQSVHDKDEQSLRMSALTKSF
AGLCVDESEVLRLVRASLADDFRLLDLLEGFLFHPPSFLGQPFVQLPRQE
RMLMLEVYYSLDPSVVRELLWRKPLGKRIGKDLEDVEGATGVSLRSCRRQ
FDNLRRIYTHLEDQRAFQCHVAVVVEGSFHISTVLACQYTVCSFLLFHRF
VLSPPSYDHPQGQPHSHHHKASVAHPTSPKPSPVEPSSSLPPSPHLLPPS
SSHGLEPTRALSFQDLEFMSLAILTFWVPDTSRTVMPDLGAKATEGQDSQ
RRSLPGACTPPLDLERRGSQTLLSLSQRLGRVGVAGRRRAGDILECGQAP
VPRVGGARSVSEVAEVLSSIADVMVREDEEREHRGADEGLEECGKGKRET
GTDCGSRDARDTPALPPRRTSWAASATCPPEGLHGRARGLLQCRLRCAYG
MELEKELLVGLRELSRLFNDSTILDQYQAQVAIRLLQPVPEIGERALGRA
IRRAGGQGDALEGGRARLRAVERRFRAILQPLSALGWGLSLHKELRDLFE
DMLVKVTAPLRDLNLSRQDLCNLFSALISSFPCLPAFTGKSKGLPQRRIK
QYAVSWARFLSGVLLCILHTYSTWHLPSSRS

mRNA from alignment at KK037251.1:401588..403720-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9130 ID=rna9130|Name=rna9130|organism=Nannochloropsis gaditana|type=mRNA|length=2133bp|location=Sequence derived from alignment at KK037251.1:401588..403720- (Nannochloropsis gaditana)
ATGTGCAACTCGAGGGAGCATAATTTACTCTTCTGCCTTCACGCTTCATC
ACCTATTCGTGTGCCCTTGAATCTCATATCGAGAACAGCACTCCATGTAA
TGGACGAAGATGGATGCTTTGATGTCTGTGTGGCAGAGCCGGATCCCATC
GAAGTAAATTCTTTTAAGCTCTGGCTCCAGGGGCTAAGTCCCGAGTCCGC
TGCAAGACGACGCGTAAATGAGATCTTCTCAGTCCTGCGCCAATCTGTCC
ATGACAAAGATGAGCAGTCACTGCGTATGTCAGCGCTGACAAAGTCTTTT
GCGGGTTTATGTGTCGACGAGTCTGAAGTGCTCCGGCTAGTGCGCGCGTC
CCTTGCAGATGACTTCAGGCTGCTGGACCTGCTCGAGGGCTTTCTCTTCC
ATCCCCCGTCCTTCCTAGGGCAGCCCTTCGTCCAGCTGCCAAGACAGGAA
CGAATGCTCATGTTGGAGGTATACTACTCGCTCGACCCCAGCGTCGTCCG
CGAATTGTTGTGGAGGAAGCCGCTCGGCAAACGGATCGGAAAAGACTTGG
AGGACGTTGAGGGAGCGACAGGTGTCTCCTTAAGAAGCTGCCGCCGGCAG
TTCGACAATTTGAGGCGCATCTATACCCATCTAGAAGACCAGCGGGCCTT
TCAATGCCACGTCGCAGTCGTGGTGGAGGGCTCTTTCCATATCTCTACGG
TGCTGGCGTGCCAGTATACGGTCTGCTCCTTCCTCCTCTTCCATCGCTTC
GTCCTATCGCCCCCCTCCTACGACCACCCTCAGGGCCAGCCACACAGTCA
TCACCACAAGGCATCCGTGGCCCACCCGACTTCTCCAAAGCCATCACCTG
TAGAACCCTCGTCCTCCCTCCCCCCGAGCCCCCACCTGCTTCCTCCTTCC
TCCTCCCATGGTCTGGAGCCCACACGCGCGCTATCCTTCCAGGACCTGGA
GTTCATGAGTCTCGCCATCCTAACCTTCTGGGTCCCCGACACCTCGCGCA
CCGTCATGCCCGACTTGGGAGCGAAGGCAACAGAAGGCCAAGACTCTCAA
AGGAGGTCTCTGCCTGGCGCCTGCACCCCGCCGCTTGACCTGGAGAGGAG
GGGCAGCCAGACTTTGTTGTCGCTCTCCCAGCGACTGGGTCGTGTGGGCG
TTGCTGGGCGCAGGAGAGCGGGCGACATCCTTGAGTGCGGGCAAGCGCCC
GTTCCCCGGGTGGGAGGGGCCCGGTCGGTCTCGGAGGTGGCGGAGGTCCT
GTCCTCGATTGCGGACGTGATGGTGAGGGAGGACGAGGAAAGGGAGCATC
GCGGCGCCGATGAGGGCCTTGAGGAGTGTGGCAAGGGAAAGCGCGAGACT
GGCACGGACTGCGGCAGCCGCGATGCCAGGGACACGCCGGCCTTGCCTCC
TCGCCGGACCTCGTGGGCGGCCTCTGCGACCTGTCCCCCGGAAGGCTTGC
ACGGGAGAGCACGCGGTCTCTTACAATGCCGTCTGCGCTGCGCGTACGGA
ATGGAACTCGAGAAGGAGCTCCTCGTGGGCCTCCGGGAGCTGAGCCGCCT
CTTCAACGATAGCACTATCCTCGACCAGTACCAGGCCCAAGTGGCCATCC
GCCTCCTCCAGCCAGTCCCGGAGATCGGCGAGAGAGCGCTGGGAAGAGCC
ATCCGGCGGGCAGGGGGGCAAGGGGATGCCCTTGAGGGCGGGCGGGCGCG
TCTCCGGGCGGTGGAGCGTCGCTTCCGCGCAATCTTGCAGCCGTTGTCGG
CACTGGGGTGGGGGCTCTCGCTGCACAAGGAATTGAGAGACCTGTTCGAG
GACATGCTCGTCAAAGTGACCGCCCCCCTCCGAGACTTGAACCTTTCTCG
CCAAGATCTGTGCAATCTATTCTCCGCCCTCATCAGCAGCTTTCCTTGCC
TGCCTGCCTTCACTGGCAAGAGCAAAGGTCTACCGCAACGGTACGTACGT
GACATTCCAGGTCCTTCACGTAGTCTGGAATTTCCTCTTGGATCTCATCA
CCGGTGCGCTTCCCATTGGTTATCTAGGCGCATAAAGCAGTATGCGGTAT
CATGGGCAAGGTTTTTAAGCGGAGTGCTCTTGTGCATTCTGCACACGTAC
TCGACATGGCACCTTCCCTCATCACGGAGTTAG

Coding sequence (CDS) from alignment at KK037251.1:401588..403720-

>rna9130 ID=rna9130|Name=rna9130|organism=Nannochloropsis gaditana|type=CDS|length=4092bp|location=Sequence derived from alignment at KK037251.1:401588..403720- (Nannochloropsis gaditana)
GCGCATAAAGCAGTATGCGGTATCATGGGCAAGGTTTTTAAGCGGAGTGC
TCTTGTGCATTCTGCACACGTACTCGACATGGCACCTTCCCTCATCACGG
AGTTAGATGTGCAACTCGAGGGAGCATAATTTACTCTTCTGCCTTCACGC
TTCATCACCTATTCGTGTGCCCTTGAATCTCATATCGAGAACAGCACTCC
ATGTAATGGACGAAGATGGATGCTTTGATGTCTGTGTGGCAGAGCCGGAT
CCCATCGAAGTAAATTCTTTTAAGCTCTGGCTCCAGGGGCTAAGTCCCGA
GTCCGCTGCAAGACGACGCGTAAATGAGATCTTCTCAGTCCTGCGCCAAT
CTGTCCATGACAAAGATGAGCAGTCACTGCGTATGTCAGCGCTGACAAAG
TCTTTTGCGGGTTTATGTGTCGACGAGTCTGAAGTGCTCCGGCTAGTGCG
CGCGTCCCTTGCAGATGACTTCAGGCTGCTGGACCTGCTCGAGGGCTTTC
TCTTCCATCCCCCGTCCTTCCTAGGGCAGCCCTTCGTCCAGCTGCCAAGA
CAGGAACGAATGCTCATGTTGGAGGTATACTACTCGCTCGACCCCAGCGT
CGTCCGCGAATTGTTGTGGAGGAAGCCGCTCGGCAAACGGATCGGAAAAG
ACTTGGAGGACGTTGAGGGAGCGACAGGTGTCTCCTTAAGAAGCTGCCGC
CGGCAGTTCGACAATTTGAGGCGCATCTATACCCATCTAGAAGACCAGCG
GGCCTTTCAATGCCACGTCGCAGTCGTGGTGGAGGGCTCTTTCCATATCT
CTACGGTGCTGGCGTGCCAGTATACGGTCTGCTCCTTCCTCCTCTTCCAT
CGCTTCGTCCTATCGCCCCCCTCCTACGACCACCCTCAGGGCCAGCCACA
CAGTCATCACCACAAGGCATCCGTGGCCCACCCGACTTCTCCAAAGCCAT
CACCTGTAGAACCCTCGTCCTCCCTCCCCCCGAGCCCCCACCTGCTTCCT
CCTTCCTCCTCCCATGGTCTGGAGCCCACACGCGCGCTATCCTTCCAGGA
CCTGGAGTTCATGAGTCTCGCCATCCTAACCTTCTGGGTCCCCGACACCT
CGCGCACCGTCATGCCCGACTTGGGAGCGAAGGCAACAGAAGGCCAAGAC
TCTCAAAGGAGGTCTCTGCCTGGCGCCTGCACCCCGCCGCTTGACCTGGA
GAGGAGGGGCAGCCAGACTTTGTTGTCGCTCTCCCAGCGACTGGGTCGTG
TGGGCGTTGCTGGGCGCAGGAGAGCGGGCGACATCCTTGAGTGCGGGCAA
GCGCCCGTTCCCCGGGTGGGAGGGGCCCGGTCGGTCTCGGAGGTGGCGGA
GGTCCTGTCCTCGATTGCGGACGTGATGGTGAGGGAGGACGAGGAAAGGG
AGCATCGCGGCGCCGATGAGGGCCTTGAGGAGTGTGGCAAGGGAAAGCGC
GAGACTGGCACGGACTGCGGCAGCCGCGATGCCAGGGACACGCCGGCCTT
GCCTCCTCGCCGGACCTCGTGGGCGGCCTCTGCGACCTGTCCCCCGGAAG
GCTTGCACGGGAGAGCACGCGGTCTCTTACAATGCCGTCTGCGCTGCGCG
TACGGAATGGAACTCGAGAAGGAGCTCCTCGTGGGCCTCCGGGAGCTGAG
CCGCCTCTTCAACGATAGCACTATCCTCGACCAGTACCAGGCCCAAGTGG
CCATCCGCCTCCTCCAGCCAGTCCCGGAGATCGGCGAGAGAGCGCTGGGA
AGAGCCATCCGGCGGGCAGGGGGGCAAGGGGATGCCCTTGAGGGCGGGCG
GGCGCGTCTCCGGGCGGTGGAGCGTCGCTTCCGCGCAATCTTGCAGCCGT
TGTCGGCACTGGGGTGGGGGCTCTCGCTGCACAAGGAATTGAGAGACCTG
TTCGAGGACATGCTCGTCAAAGTGACCGCCCCCCTCCGAGACTTGAACCT
TTCTCGCCAAGATCTGTGCAATCTATTCTCCGCCCTCATCAGCAGCTTTC
CTTGCCTGCCTGCCTTCACTGGCAAGAGCAAAGGTCTACCGCAACGGCGC
ATAAAGCAGTATGCGGTATCATGGGCAAGGTTTTTAAGCGGAGTGCTCTT
GTGCATTCTGCACACGTACTCGACATGGCACCTTCCCTCATCACGGAGTT
AGATGTGCAACTCGAGGGAGCATAATTTACTCTTCTGCCTTCACGCTTCA
TCACCTATTCGTGTGCCCTTGAATCTCATATCGAGAACAGCACTCCATGT
AATGGACGAAGATGGATGCTTTGATGTCTGTGTGGCAGAGCCGGATCCCA
TCGAAGTAAATTCTTTTAAGCTCTGGCTCCAGGGGCTAAGTCCCGAGTCC
GCTGCAAGACGACGCGTAAATGAGATCTTCTCAGTCCTGCGCCAATCTGT
CCATGACAAAGATGAGCAGTCACTGCGTATGTCAGCGCTGACAAAGTCTT
TTGCGGGTTTATGTGTCGACGAGTCTGAAGTGCTCCGGCTAGTGCGCGCG
TCCCTTGCAGATGACTTCAGGCTGCTGGACCTGCTCGAGGGCTTTCTCTT
CCATCCCCCGTCCTTCCTAGGGCAGCCCTTCGTCCAGCTGCCAAGACAGG
AACGAATGCTCATGTTGGAGGTATACTACTCGCTCGACCCCAGCGTCGTC
CGCGAATTGTTGTGGAGGAAGCCGCTCGGCAAACGGATCGGAAAAGACTT
GGAGGACGTTGAGGGAGCGACAGGTGTCTCCTTAAGAAGCTGCCGCCGGC
AGTTCGACAATTTGAGGCGCATCTATACCCATCTAGAAGACCAGCGGGCC
TTTCAATGCCACGTCGCAGTCGTGGTGGAGGGCTCTTTCCATATCTCTAC
GGTGCTGGCGTGCCAGTATACGGTCTGCTCCTTCCTCCTCTTCCATCGCT
TCGTCCTATCGCCCCCCTCCTACGACCACCCTCAGGGCCAGCCACACAGT
CATCACCACAAGGCATCCGTGGCCCACCCGACTTCTCCAAAGCCATCACC
TGTAGAACCCTCGTCCTCCCTCCCCCCGAGCCCCCACCTGCTTCCTCCTT
CCTCCTCCCATGGTCTGGAGCCCACACGCGCGCTATCCTTCCAGGACCTG
GAGTTCATGAGTCTCGCCATCCTAACCTTCTGGGTCCCCGACACCTCGCG
CACCGTCATGCCCGACTTGGGAGCGAAGGCAACAGAAGGCCAAGACTCTC
AAAGGAGGTCTCTGCCTGGCGCCTGCACCCCGCCGCTTGACCTGGAGAGG
AGGGGCAGCCAGACTTTGTTGTCGCTCTCCCAGCGACTGGGTCGTGTGGG
CGTTGCTGGGCGCAGGAGAGCGGGCGACATCCTTGAGTGCGGGCAAGCGC
CCGTTCCCCGGGTGGGAGGGGCCCGGTCGGTCTCGGAGGTGGCGGAGGTC
CTGTCCTCGATTGCGGACGTGATGGTGAGGGAGGACGAGGAAAGGGAGCA
TCGCGGCGCCGATGAGGGCCTTGAGGAGTGTGGCAAGGGAAAGCGCGAGA
CTGGCACGGACTGCGGCAGCCGCGATGCCAGGGACACGCCGGCCTTGCCT
CCTCGCCGGACCTCGTGGGCGGCCTCTGCGACCTGTCCCCCGGAAGGCTT
GCACGGGAGAGCACGCGGTCTCTTACAATGCCGTCTGCGCTGCGCGTACG
GAATGGAACTCGAGAAGGAGCTCCTCGTGGGCCTCCGGGAGCTGAGCCGC
CTCTTCAACGATAGCACTATCCTCGACCAGTACCAGGCCCAAGTGGCCAT
CCGCCTCCTCCAGCCAGTCCCGGAGATCGGCGAGAGAGCGCTGGGAAGAG
CCATCCGGCGGGCAGGGGGGCAAGGGGATGCCCTTGAGGGCGGGCGGGCG
CGTCTCCGGGCGGTGGAGCGTCGCTTCCGCGCAATCTTGCAGCCGTTGTC
GGCACTGGGGTGGGGGCTCTCGCTGCACAAGGAATTGAGAGACCTGTTCG
AGGACATGCTCGTCAAAGTGACCGCCCCCCTCCGAGACTTGAACCTTTCT
CGCCAAGATCTGTGCAATCTATTCTCCGCCCTCATCAGCAGCTTTCCTTG
CCTGCCTGCCTTCACTGGCAAGAGCAAAGGTCTACCGCAACG

Synonyms

Publications