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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna methyltransferase nop2-like protein |
| Orig transcript id | gnl|cribi|Naga_100012g60.1909.mrna |
| Orig protein id | gnl|cribi|Naga_100012g60.1909 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037251.1 | supercontig | KK037251.1:355560..358446 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9110 ID=rna9110|Name=rna9110|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp
ATGGAGGGAGAGCAGGCAACAGATGCGACGCCAAAGCGGGCCAAGACTGA
TGGTACGGGCGAGCGTGATGAAATGGAAGACGGGGGCGACGCCATGATCG
TGGATGGAGATGAAGGCTTGAAAAGGGAACCTGACCTGAGAGAAAGGGTT
GCGGCCTACCTGCGGGACCCCGCGACGGCCTTAAAGCCAGATCCTCCAGA
TGTGCCATCTTTCATGGAAAGCCCTTTTCGCTACAATCCGAAAGCAAAAA
TTCTGAATCCAGAGGAAACGCAAGGGAAAGTGGATGCCGACGGGAACACT
GCTCTGATAATGGCGATAAAAGCAGGTTCCGAAAAAGCTTTCTTTCTCCT
TCTCGACGGGAAAGACCAGGCTTACATCAACAGGCAAAACTCCAAAGGCG
CCACCGCATTAAACGTGGCGGCCCACCGAGGCTACGTAGCCCCGGTCCGA
GAGCTTCTCGACACGGCTCACGCGGACGTGAACATCCCCAACAGCAGCGG
CTCCACCTCCCTCATCCAGGCCTCCCACTTCGGGCACACGGCGGTGGTTC
GCCTCTTGTTGCAGCACGGCGCCGCCGTGGACCTGCCCAACCACAAGGGG
ACGACGGCCTTGATGCGAGCGGCGCAGGAGGGCCACGTGGCGGTGGTGGC
AGCGCTGCTGAGAACCGGTGGGGACGTGAACCGCCGCAACCACGAGCGGA
TGAACGCCCTGATGCTTGCGTCGCAGCGCGGGCACGACGGGATTGTGCAC
ATGCTGATCAAGCACGGCGCGGACATCGACTGCCAGACCGTGCAGGGTTC
CACAGCGTTGATGCTGGCCTGCAAGCGCCAGCACGAAGCCGTCGTGCGGG
TCCTCTTGACGGCGGGGGCAGAGATGTTTGTCCGAGACAGTCGCGGACGG
ACGGCCAGGGACACGGCAGTGAAACGGAATCACAAGCCCATCATCGCCAT
GCTGCAGGCAAGCCGACAGGTCCGCCTCATGCAGCAGGAGGCGCGGATCG
TCCGCTCTCGGGTGCTCGTCCACATGTACGAGCTCCTAGGCCGAAAACGG
GCGGTGCCTATACCGGAGGTGGCCGCGGGCCTGGCGGCCAGGGAGAATCG
ACGGCGGTCTCGCGAGGAGGCACGGCGGGCGCAGACACAGCGTCAGGAGT
GGGGGAAGCGGGCTTACGGACGAAAAGGGGGTGGGGAAGGGCCGATGGCG
GTAGGTCGCAGGAAGTCCTGTGCCGGGCCATGGAGCTCCCCGTTCCCCCT
CTTCCGACACATCGAGCGCTTTATCCCGTGGCCGCGCCTGTGGGGCCCAC
TGTTGCCCATCCTGCACAAGCGCTGCCACGTGGACGCGAACGAGGCCCTG
CGCGGCGCCCTGAGCATCATGGACGAGGTCCTGACCGACCTGAACGTCTC
CACCGATGCGGTCCAGGAGATGCACTTGGTTCGCGCCGCTGCTTACCCGG
CCATGCGCGCCTGTCTGTGCGCGAAACGTGGGATGCCCTCGGATTTGGCG
GCCACTATAGTCCGCTGGAACGACGCTCAGAGCATCTTGGCACGCTTCGA
GCGGGGCGTCACGTTCTCGCCTCTGGTGGCAGACAGGGCGGTCAAGGACG
CGGCCAGGCTCTACCACTGGCTGTGCCTTGGGGGGGGGACCGGACTCGGA
TGGGCCCGGGGGGGCGATGCGGGAGGACGAGGGCACCGGCGTGGAGATGG
GCCAAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGCAACAGCTGCTTCTA
TTGCAACACCAGCAGCAGGGGCAAGCACTTGCAGTCCAAGGAGGGGCAGG
AATGGCAGCCCATCACACCCAGATGGTCACGTCACAGCATGTGCACCAGC
ATCAGCAGCAGCACGTGGCGGCGCCAATGGTGATGGGGGCGGGCGGAACT
GGTGGGAACGGAGGAGCGGCAGTGTCGTACATGCAGTGGACGGGACGGGT
ATGAGCCCGACGTGTGAATCGCAATTTTCGTATATGTATGAGTCGGGCAT
GCAGGAATTGTCACAATCGATGTTTACCATGAGTGATACTGGATGCATCC
GCCGGCCTAGGGGAGACAGGCATCACGAGACATGCTAG back to topprotein sequence of rna9110 >rna9110-protein ID=rna9110-protein|Name=rna9110|organism=Nannochloropsis gaditana|type=polypeptide|length=762bp
MIKAEFSNSMGKKRAPSVQSGSPSSVSRAIRRNDGGDARATRRDTAERQR
KLPLAPSTKPISNGRQHQLRGKKKGKETELESESEVEESEAEDEDAEEVG
EEDEALEGSGSDEEELHAKDLGFTDDNQSWLKMKKSNTNGLLSSEDEVEE
EEEEDEDDEEEEEGEGDEADDFMSGESEESGEEVADEEEDFEVGHEGDQD
EEDEAGDEGGEGGPWPVAGLASGLKERIEEVVHILSDFRARRKAGVARAE
YVRQLGRDLSEHHGYLPELTGMFLTMLGPAECVEFMAANDRPRPLVVRAN
TLKTRRKDLAQALLKRGVSLEPLAGGWSKVALKIIDSQVPVGATPEYLAG
HYILQSASSMTPVMALAPQPHERVLDLSAAPGGKASYCAQLMKNTGLLVA
NDLKSERQKATIANLHRLGVRNAVVCSYDGRRLPSVMKGFDRALLDAPCS
GLGIVARDQSVKVQRTLADVRKMSHLQRELLRAAVDCVDAGSKTGGVLVY
STCSVAVEENELVVDYILRARPNVRVVPTGLGDFGRPGFTRVAEHRFHPS
LALTRRFYPHVHNMDGFFVCKLQKLTNALPGKNEEEERAEAKGKKRKQMR
DGENVESRGNETRKGVQKVEKGEEEAPFRIKKKKKGSQPQGPVREIPQST
AETTVAESRVSGQATMSSGTNSERDGPLVEKDKHTRKTESKTPKASGEDV
VKEGKKKSGQSKQEGGRHEVGGGRKVSNGERQKSEQKSGRPKESQGKPVG
RKGKKAKGVMSS back to topmRNA from alignment at KK037251.1:355560..358446+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9110 ID=rna9110|Name=rna9110|organism=Nannochloropsis gaditana|type=mRNA|length=2887bp|location=Sequence derived from alignment at KK037251.1:355560..358446+ (Nannochloropsis gaditana)
GCAGCACTAAGGGCTTGCAAGATACCACCCCTTCCGGGGTGTCTTACAAA
GCATACCACGCGGCGCCCCGAACATTTTTACTATTGTGGGATCGAGAAGG
ATCCCTGCATGTGCACATTTTTTCCTCGGCCGTTTTGACTGTCTAGATGT
GATGAATTGGCCCCCCACGCCGTTCATCCAGCACCATGAGGTTTACCAAA
TTGTAGGTCCTCTTGGCATGGACATAGAAACATACTGAGACGGGCTCCGT
GGGGCTCCGTCTACATGAAACCAAGCATAAGGAATTCGGGCATCAGCAAA
TGGCGCCTCTAGTCTTCTTGGTCGGAGTATACTTCTTCCATATGGTAACA
AGCCTCACCATACTTGTAGCCCACAGACCcacatctccttctttttttgc
aAATGATAAAGGCTGAATTCTCCAAttcgatggggaagaagagagccCCG
TCCGTGCAAAGCGGCTCACCATCTTCTGTTTCAAGGGCAATCCGTCGTAA
TGATGGCGGCGACGCTCGGGCTACTCGAAGGGACACGGCGGAGCGGCAAC
GCAAGCTGCCCCTCGCACCATCCACTAAACCGATAAGCAATGGACGGCAA
CATCAGCTgcgaggaaagaaaaaggggaaggaaactgAGCTGGAAAGCGA
GAGTGAGGTTGAGGAGAGCgaagcggaggacgaggacgccgaggaagttg
gtgaagaggatgaagcaTTGGAGGGGTCGGGCTCCGATGAAGAGGAACTT
CATGCGAAAGATCTGGGCTTCACCGACGACAACCAGTCATGGCTCaaaat
gaagaagagcaaTACGAATGGCTTGTTATCTTCGGAGgatgaagtggaag
aagaagaggaagaagacgaggatgacgaggaggaggaggagggggaaggg
gatgaggCCGACGATTTTATGTCAGGCGAGAGTGAAGAGagtggagagga
ggttgcagacgaggaagaggatttTGAGGTTGGACACGAGGGAGAtcaag
atgaggaggatgaggcaggcgacgagggaggagaaggggggcctTGGCCT
GTCGCGGGCCTCGCCTCCGGGCTGAAGGAGCGGATCGAGGAGGTGGTTCA
CATTCTCTCCGACTTCCGCGCGCGCCGGAAGGCAGGAGTCGCGCGGGCGG
AGTACGTGAGGCAGCTGGGGCGTGACCTGTCGGAGCACCACGGATACCTG
CCCGAGCTGACGGGAATGTTCCTGACCATGTTGGGGCCCGCGGAGTGCGT
GGAGTTTATGGCCGCGAACGACCGACCCAGGCCCCTGGTCGTCCGCGCCA
ACACCCTCAAGACGCGGCGCAAGGACCTGGCGCAGGCCCTGCTCAAGCGG
GGGGTGAGTCTGGAGCCCCTGGCGGGCGGCTGGTCCAAGGTGGCGCTGAA
GATCATCGACTCCCAGGTCCCCGTGGGAGCGACCCCGGAGTACCTGGCAG
GGCACTACATTTTGcagagcgcctcctccatgacgCCCGTGATGGCTTTG
GCGCCCCAGCCCCACGAGAGGGTGCTGGACCTCTCGGCGGCGCcgggggg
caaggcgagTTACTGCGCGCAGCTGATGAAGAACACGGGGCTGCTGGTGG
CGAACGACCTTAAGTCCGAGCGCCAGAAGGCCACTATCGCCAACCTGCAC
CGGCTGGGTGTCCGGAACGCGGTGGTTTGCAGCTACGACGGCCGGCGGCT
GCCCTCAGTCATGAAGGGCTTCGACCGCGCCCTGCTGGATGCCCCGTGCT
CGGGCCTGGGGATCGTGGCCCGAGACCAGTCTGTGAAGGTCCAGCGGACC
CTGGCCGACGTCCGGAAGATGTCGCACCTACAGAGGGAGCTGCTGCGGGC
GGCGGTAGACTGCGTGGACGCGGGGAGCAAGACCGGGGGCGTGCTGGTGT
ACTCGACCTGctcggtggcggtggaggagaacgagcTCGTGGTGGACTAC
ATCCTCCGGGCCCGGCCTAACGTCCGCGTGGTGCCCACGGGCCTCGGGGA
CTTTGGGCGGCCGGGCTTCACGCGGGTCGCAGAGCACCGATTCCACCCGT
CCTTGGCCCTGACCAGGCGCTTCTATCCCCATGTCCACAACATGGATGGC
TTCTTCGTCTGCAAGCTGCAAAAGCTGACGAACGCGCTGCCCGGaaagaa
cgaggaggaagagagggcagaggcgaaggggaaaaagaggaaacaGATGC
GCGATGGCGAAAATGTGGAAAGTAGAGGGAATGAGACAAGAAAAGGTGTG
CAAAAAgttgagaagggagaggaggaagcccctTTCCGTAttaaaaagaa
gaagaaggggagtcAGCCCCAAGGGCCGGTCAGAGAGATCCCGCAGAGCA
CCGCAGAGACGACGGTTGCAGAATCGAGGGTATCTGGCCAGGCGACGATG
TCAAGTGGAACAAACTCTGAGAGAGACGGGCCGTTGGTGGAGAAGGATAA
GCACACGAGAAAGACGGAATCAAAAACGCCAAAAGCGTCAGGGGAGGACG
TtgtcaaggaagggaagaagaaaagtggGCAGAGCAAGCAAGAAGGGGGC
CGGCATGAGGTCGGCGGAGGGCGAAAAGTTAGTAACGGAGAGCGGCAGAA
GTCTGAGCAGAAGTCAGGCCGGCCAAAGGAGTCGCAAGGAAAACCTGtcg
gaagaaaagggaaaaaggcgaaAGGGGTCATGTCCTCTTAGAAAGGGGCC
ATGTCGTGTCGATTCTGTGAGATCAAAGtaagaaaatgaaaaaacGTAGC
CTCTCATGGATCGTCAAGGACGAGGACCGCGCAGGCAGTAGAAAGGAACG
AGGCAGAAATGAAAGAGGAAGTCATTTCGAGACGGTGGAACAAACGACGT
AAAATAGTCGAAATAGTGGATGGTATCCATGACTTCC back to topCoding sequence (CDS) from alignment at KK037251.1:355560..358446+ >rna9110 ID=rna9110|Name=rna9110|organism=Nannochloropsis gaditana|type=CDS|length=2289bp|location=Sequence derived from alignment at KK037251.1:355560..358446+ (Nannochloropsis gaditana)
ATGATAAAGGCTGAATTCTCCAAttcgatggggaagaagagagccCCGTC
CGTGCAAAGCGGCTCACCATCTTCTGTTTCAAGGGCAATCCGTCGTAATG
ATGGCGGCGACGCTCGGGCTACTCGAAGGGACACGGCGGAGCGGCAACGC
AAGCTGCCCCTCGCACCATCCACTAAACCGATAAGCAATGGACGGCAACA
TCAGCTgcgaggaaagaaaaaggggaaggaaactgAGCTGGAAAGCGAGA
GTGAGGTTGAGGAGAGCgaagcggaggacgaggacgccgaggaagttggt
gaagaggatgaagcaTTGGAGGGGTCGGGCTCCGATGAAGAGGAACTTCA
TGCGAAAGATCTGGGCTTCACCGACGACAACCAGTCATGGCTCaaaatga
agaagagcaaTACGAATGGCTTGTTATCTTCGGAGgatgaagtggaagaa
gaagaggaagaagacgaggatgacgaggaggaggaggagggggaagggga
tgaggCCGACGATTTTATGTCAGGCGAGAGTGAAGAGagtggagaggagg
ttgcagacgaggaagaggatttTGAGGTTGGACACGAGGGAGAtcaagat
gaggaggatgaggcaggcgacgagggaggagaaggggggcctTGGCCTGT
CGCGGGCCTCGCCTCCGGGCTGAAGGAGCGGATCGAGGAGGTGGTTCACA
TTCTCTCCGACTTCCGCGCGCGCCGGAAGGCAGGAGTCGCGCGGGCGGAG
TACGTGAGGCAGCTGGGGCGTGACCTGTCGGAGCACCACGGATACCTGCC
CGAGCTGACGGGAATGTTCCTGACCATGTTGGGGCCCGCGGAGTGCGTGG
AGTTTATGGCCGCGAACGACCGACCCAGGCCCCTGGTCGTCCGCGCCAAC
ACCCTCAAGACGCGGCGCAAGGACCTGGCGCAGGCCCTGCTCAAGCGGGG
GGTGAGTCTGGAGCCCCTGGCGGGCGGCTGGTCCAAGGTGGCGCTGAAGA
TCATCGACTCCCAGGTCCCCGTGGGAGCGACCCCGGAGTACCTGGCAGGG
CACTACATTTTGcagagcgcctcctccatgacgCCCGTGATGGCTTTGGC
GCCCCAGCCCCACGAGAGGGTGCTGGACCTCTCGGCGGCGCcggggggca
aggcgagTTACTGCGCGCAGCTGATGAAGAACACGGGGCTGCTGGTGGCG
AACGACCTTAAGTCCGAGCGCCAGAAGGCCACTATCGCCAACCTGCACCG
GCTGGGTGTCCGGAACGCGGTGGTTTGCAGCTACGACGGCCGGCGGCTGC
CCTCAGTCATGAAGGGCTTCGACCGCGCCCTGCTGGATGCCCCGTGCTCG
GGCCTGGGGATCGTGGCCCGAGACCAGTCTGTGAAGGTCCAGCGGACCCT
GGCCGACGTCCGGAAGATGTCGCACCTACAGAGGGAGCTGCTGCGGGCGG
CGGTAGACTGCGTGGACGCGGGGAGCAAGACCGGGGGCGTGCTGGTGTAC
TCGACCTGctcggtggcggtggaggagaacgagcTCGTGGTGGACTACAT
CCTCCGGGCCCGGCCTAACGTCCGCGTGGTGCCCACGGGCCTCGGGGACT
TTGGGCGGCCGGGCTTCACGCGGGTCGCAGAGCACCGATTCCACCCGTCC
TTGGCCCTGACCAGGCGCTTCTATCCCCATGTCCACAACATGGATGGCTT
CTTCGTCTGCAAGCTGCAAAAGCTGACGAACGCGCTGCCCGGaaagaacg
aggaggaagagagggcagaggcgaaggggaaaaagaggaaacaGATGCGC
GATGGCGAAAATGTGGAAAGTAGAGGGAATGAGACAAGAAAAGGTGTGCA
AAAAgttgagaagggagaggaggaagcccctTTCCGTAttaaaaagaaga
agaaggggagtcAGCCCCAAGGGCCGGTCAGAGAGATCCCGCAGAGCACC
GCAGAGACGACGGTTGCAGAATCGAGGGTATCTGGCCAGGCGACGATGTC
AAGTGGAACAAACTCTGAGAGAGACGGGCCGTTGGTGGAGAAGGATAAGC
ACACGAGAAAGACGGAATCAAAAACGCCAAAAGCGTCAGGGGAGGACGTt
gtcaaggaagggaagaagaaaagtggGCAGAGCAAGCAAGAAGGGGGCCG
GCATGAGGTCGGCGGAGGGCGAAAAGTTAGTAACGGAGAGCGGCAGAAGT
CTGAGCAGAAGTCAGGCCGGCCAAAGGAGTCGCAAGGAAAACCTGtcgga
agaaaagggaaaaaggcgaaAGGGGTCATGTCCTCTTAG back to top
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