rna9106, rna9106 (mRNA) Nannochloropsis gaditana

Overview
Namerna9106
Unique Namerna9106
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1580
Alignment locationKK037251.1:348146..349529 -

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Properties
Property NameValue
Productcharged multivesicular body protein
Orig transcript idgnl|cribi|Naga_100012g56.1959.mrna
Orig protein idgnl|cribi|Naga_100012g56.1959
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:348146..349529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g56gene8829Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9106rna9106-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21627.1cds9076Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9106 ID=rna9106|Name=rna9106|organism=Nannochloropsis gaditana|type=mRNA|length=1580bp
ACAATCTATTCGTTAGGGGCATTCCGAGTCTGATTATGGAGTTGTAGGTC
AAGACTGTGGCAGGCGTGAAAGAGAGATACCACAGTGCAAAAAGTGTCAA
TTTGAACAATTGTGTAGTAGGCGTGACAGAAGATCAGCGAACCCGCCGAG
CGGCGCTCTCCGCCTGAGCCCTTGCTTATGCCCCCGCGCCGCAAAAACCT
TACCGTAGGAATACGAACGCACCGAATTTTTCTCATTTGTTCAAAAACTA
CTTAAGAGAATGGTAACTCTTGTCTGCTTCGAGACGGAAGTACTGATAAT
TTGCCGTGACGCGAGGCAAAGGTAAAGGGCAGTGCGGTGTAGCTTCATTA
TGCTACACGGAACAAATGTAACACCCTTCATTTAAATCATGGGTAAGGTA
CTACTTGCCTCTTTCAGGACGTGATGGACAATGACATATATTATCATGAA
GTGTGCGGTGTTGTTCGGCCAAACTTATCACGCCCCTACATGGAATGGGG
GGCTCCAGTGTACGCTGATCCCCGTCACGTGGAACATGGTGTCTTTAAGT
ACCGTGGGCTCGTTGAAGGGACGCAATACTTTGATGCGGCTCATAAACGA
GCTCTTAAAAAGCAGTTTTGTGGTCTCTTTCTCCGCGAACTTGCCGCAGG
TCGAAATGCGCTCAGGGACGCCGCTTCGGATAAATCGTGTGGCCGACTCC
CGCGTTGCCCCTGTGAACGAATCTCACGCCCGCTCTCGCCCACGTGCCCC
GCACAGCAAATTTGGCTACGCTAAAGATGGGGAACATGTGGGCCAAAAAG
CCTTTGAAGGAAATTATGCGCGAGAATAAACGCATGATTAACCGCGCCAT
CCGGGAGCTGGACCGGGAGCGCAACAACTTGGAAAAGAACGAGAAGAAGC
TCATAATGGATATAAAGAAATATGCCAAGGAGAACCAGATGGGGGCGGTC
AAGACCATGGCAAAGGACTTAGTTCGTACACGAAATTATCAGACCAAGTT
CATTGAAATGCGCTCGCATTTGCAGGGGGCTGCCCTGAAGCTGGAAACCG
TGCGGTCCCACGAGGCCATGGCCAGTGCCATGCGCAGCGTTACATCGGCC
ATGGTAAGCATGAACAAACAGGTCAATGTCCCGGCGCTCACGAAGATCAT
GACGGACTTCGCCCGCGAGAACGAGAAGTCGGAGCTGACGGGGGAGATGC
TGGGTGACGCCATGGACGACGCGATGACGGAGGAAGGGGACGAGGAGGAG
CAGGAGCGGATCGTGGGCGCCGTGCTCACGGAGCTGGGTTTGGACATGAC
GGACGCCGTGCCCGAGGCCCCAGGGGCGGTGCCCAATACGGCCACTGCCA
CGGCCGCGGCCACCAGCAGTGGGGGACAGAGAGAGCCACAGGCGTTGGGG
GCAGACCCGACCATGACGGATCTGGAGGCACGTTTGAACAATTTGAGAAG
GGAGTGAGTCGGGAGTTGAAGTCGAGGACGCAGGGGGGAGGGGCGGGGCT
CACAGAGAGTTACTGTGGGTGATTTATAATGTGAAAGAAAGCAATCGAGA
AAACCAAGAAGTATCCACCTTATAGGGCGT
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protein sequence of rna9106

>rna9106-protein ID=rna9106-protein|Name=rna9106|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MANLATLKMGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKL
IMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETV
RSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEML
GDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATAT
AAATSSGGQREPQALGADPTMTDLEARLNNLRRE
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mRNA from alignment at KK037251.1:348146..349529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9106 ID=rna9106|Name=rna9106|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp|location=Sequence derived from alignment at KK037251.1:348146..349529- (Nannochloropsis gaditana)
TAACACCCTTCATTTAAATCATGGGTAAGGTACTACTTGCCTCTTTCAGG
ACGTGATGGACAATGACATATATTATCATGAAGTGTGCGGTGTTGTTCGG
CCAAACTTATCACGCCCCTACATGGAATGGGGGGCTCCAGTGTACGCTGA
TCCCCGTCACGTGGAACATGGTGTCTTTAAGTACCGTGGGCTCGTTGAAG
GGACGCAATACTTTGATGCGGCTCATAAACGAGCTCTTAAAAAGCAGTTT
TGTGGTCTCTTTCTCCGCGAACTTGCCGCAGGTCGAAATGCGCTCAGGGA
CGCCGCTTCGGATAAATCGTGTGGCCGACTCCCGCGTTGCCCCTGTGAAC
GAATCTCACGCCCGCTCTCGCCCACGTGCCCCGCACAGCAAATTTGGCTA
CGCTAAAGATGGGGAACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATG
CGCGAGAATAAACGCATGATTAACCGCGCCATCCGGGAGCTGGACCGGGA
GCGCAACAACTTGGAAAAGAACGAGAAGAAGCTCATAATGGATATAAAGA
AATATGCCAAGGAGAACCAGATGGGGGCGGTCAAGACCATGGCAAAGGAC
TTAGTTCGTACACGGTGCGTGGGGTAGGGGCCCCGGTAAAAGCGCATGCG
TGCCTGGACTCTCGTTCAACTCAGAAGGAGTCTTATGGGTGGTTTTCCCA
CAAGTAAAAAAAGGACACCAGAAATTTTTACAATCTGTCCCTGTGTTCCC
TATTTCCACATATTTCTGCTATCACGCTTCCGATAGAAATTATCAGACCA
AGTTCATTGAAATGCGCTCGCATTTGCAGGGGGCTGCCCTGAAGCTGGAA
ACCGTGCGGTCCCACGAGGCCATGGCCAGTGCCATGCGCAGCGTTACATC
GGCCATGGTAAGCATGAACAAACAGGTCAATGTCCCGGCGCTCACGAAGA
TCATGACGGACTTCGCCCGCGAGAACGAGAAGTCGGAGCTGACGGGGGAG
ATGCTGGGTGACGCCATGGACGACGCGATGACGGAGGAAGGGGACGAGGA
GGAGCAGGAGCGGATCGTGGGCGCCGTGCTCACGGAGCTGGGTTTGGACA
TGACGGACGCCGTGCCCGAGGCCCCAGGGGCGGTGCCCAATACGGCCACT
GCCACGGCCGCGGCCACCAGCAGTGGGGGACAGAGAGAGCCACAGGCGTT
GGGGGCAGACCCGACCATGACGGATCTGGAGGCACGTTTGAACAATTTGA
GAAGGGAGTGAGTCGGGAGTTGAAGTCGAGGACGCAGGGGGGAGGGGCGG
GGCTCACAGAGAGTTACTGTGGGTGATTTATAATGTGAAAGAAAGCAATC
GAGAAAACCAAGAAGTATCCACCTTATAGGGCGT
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Coding sequence (CDS) from alignment at KK037251.1:348146..349529-

>rna9106 ID=rna9106|Name=rna9106|organism=Nannochloropsis gaditana|type=CDS|length=2115bp|location=Sequence derived from alignment at KK037251.1:348146..349529- (Nannochloropsis gaditana)
AAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTGCAGGGGGCTG
CCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGCCAGTGCCATG
CGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGGTCAATGTCCC
GGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAACGAGAAGTCGG
AGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGCGATGACGGAG
GAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCGTGCTCACGGA
GCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCAGGGGCGGTGC
CCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGGGGGACAGAGA
GAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATCTGGAGGCACG
TTTGAACAATTTGAGAAGGGAGTGACAAATTTGGCTACGCTAAAGATGGG
GAACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATGCGCGAGAATAAAC
GCATGATTAACCGCGCCATCCGGGAGCTGGACCGGGAGCGCAACAACTTG
GAAAAGAACGAGAAGAAGCTCATAATGGATATAAAGAAATATGCCAAGGA
GAACCAGATGGGGGCGGTCAAGACCATGGCAAAGGACTTAGTTCGTACAC
GATGGAAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTGCAGGG
GGCTGCCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGCCAGTG
CCATGCGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGGTCAAT
GTCCCGGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAACGAGAA
GTCGGAGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGCGATGA
CGGAGGAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCGTGCTC
ACGGAGCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCAGGGGC
GGTGCCCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGGGGGAC
AGAGAGAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATCTGGAG
GCACGTTTGAACAATTTGAGAAGGGAGTGACAAATTTGGCTACGCTAAAG
ATGGGGAACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATGCGCGAGAA
TAAACGCATGATTAACCGCGCCATCCGGGAGCTGGACCGGGAGCGCAACA
ACTTGGAAAAGAACGAGAAGAAGCTCATAATGGATATAAAGAAATATGCC
AAGGAGAACCAGATGGGGGCGGTCAAGACCATGGCAAAGGACTTAGTTCG
TACACGATGGAAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTG
CAGGGGGCTGCCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGC
CAGTGCCATGCGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGG
TCAATGTCCCGGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAAC
GAGAAGTCGGAGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGC
GATGACGGAGGAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCG
TGCTCACGGAGCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCA
GGGGCGGTGCCCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGG
GGGACAGAGAGAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATC
TGGAGGCACGTTTGAACAATTTGAGAAGGGAGTGACAAATTTGGCTACGC
TAAAGATGGGGAACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATGCGC
GAGAATAAACGCATGATTAACCGCGCCATCCGGGAGCTGGACCGGGAGCG
CAACAACTTGGAAAAGAACGAGAAGAAGCTCATAATGGATATAAAGAAAT
ATGCCAAGGAGAACCAGATGGGGGCGGTCAAGACCATGGCAAAGGACTTA
GTTCGTACACGATGG
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Synonyms
Publications