EWM21627.1, cds9076 (CDS) Nannochloropsis gaditana

Overview
NameEWM21627.1
Unique Namecds9076
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:349506..349509 -
Alignment locationKK037251.1:348916..349141 -
Alignment locationKK037251.1:348269..348743 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21627.1
Productcharged multivesicular body protein
Orig transcript idgnl|cribi|Naga_100012g56.1959.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:349506..349509 -
KK037251.1supercontigKK037251.1:348916..349141 -
KK037251.1supercontigKK037251.1:348269..348743 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|585101882|gb|EWM21627.1| (charged multivesicular body protein [Nannochloropsis gaditana])

HSP 1 Score: 472.626 bits (1215), Expect = 1.898e-168
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MANLATLKMGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE 234
            MANLATLKMGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE
Sbjct:    1 MANLATLKMGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE 234          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|585101883|gb|EWM21628.1| (charged multivesicular body protein [Nannochloropsis gaditana])

HSP 1 Score: 457.988 bits (1177), Expect = 6.565e-163
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    9 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE 234
            MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE
Sbjct:    1 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRRE 226          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|676378143|ref|XP_009032350.1| (hypothetical protein AURANDRAFT_18982 [Aureococcus anophagefferens] >gi|323456830|gb|EGB12696.1| hypothetical protein AURANDRAFT_18982 [Aureococcus anophagefferens])

HSP 1 Score: 259.996 bits (663), Expect = 1.457e-84
Identity = 137/230 (59.57%), Postives = 169/230 (73.48%), Query Frame = 0
Query:    9 MGNMWAKK-PLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPN----TATATAAATSSGGQREPQALGADPTMTDLEARLNNLRR 233
            MGN W +K PLKE++R+NKR IN+A+RELDRER NLEK E+KLI DIKKYA + QMG+VK MAKDLVRTR Y TKFIE+RSHL   +LKL+TV+S EAMASAM+SVT AM+ MNK VNVPA+ KIM +F  ENE++E+T EM+GD +DDAM ++GDEEE+E+IVGAVL E+G+   D VP AP   PN         A    +             T++DLEARLNNLR+
Sbjct:    1 MGNTWGRKVPLKEVLRKNKREINKAMRELDRERANLEKQEQKLIADIKKYAGQGQMGSVKIMAKDLVRTRTYITKFIELRSHLGAVSLKLQTVKSQEAMASAMKSVTQAMIKMNKTVNVPAVQKIMMNFQLENERAEMTQEMMGDMLDDAMEQDGDEEEEEKIVGAVLDEIGISFGDTVPAAPTLAPNQPQAADVPAAPVAVADAGGGGGGGADASTVSDLEARLNNLRK 230          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|299117086|emb|CBN73857.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 249.595 bits (636), Expect = 2.996e-80
Identity = 144/239 (60.25%), Postives = 172/239 (71.97%), Query Frame = 0
Query:   15 KKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREP--------------------QALGADPTMTDLEARLNNLRR 233
            KKPLKEI+RENKR I RA+R++DRE+ NLEK EKKL+ +IKK AK  QMGAVK +AKDLVRTRNY TKFIE RSHLQG  LKLETVRSHEAMA AM+ VT AMVS+NKQVNVPAL KIM +FARENE+SELTGE++GD +DDA+ ++GD E +++IV  VL E+G+   + VPEAP A      A  AA S+   R+P                     A G D  M++LEARLNNLRR
Sbjct:   11 KKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGELIGDTLDDALADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTA----GVAQGAAGSAEAARQPVAAAEASGGGGGGPQPPAPPGAGGGDAGMSELEARLNNLRR 245          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|1210532124|dbj|GAX09283.1| (charged multivesicular body protein 2A [Fistulifera solaris])

HSP 1 Score: 238.424 bits (607), Expect = 3.536e-76
Identity = 126/226 (55.75%), Postives = 163/226 (72.12%), Query Frame = 0
Query:    9 MGNMWAK-KPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRR 233
            MGN+  + KPLKE++RENKRMI RA+RELDRE+  LEK EK+L M+IKK A+ENQM  VK +AKDLVRTR +  KF+EMRSHLQG ALKL+T++SHEAMASAM+S   AM  MNK VNV  +TK++ DF REN ++E+  E +GDA+DDAM +E  EEE++R+V  VL E+G+   + +PEA        T + A + SG          DP ++DLEARLNNL+R
Sbjct:    1 MGNLLGRDKPLKEVLRENKRMITRAVRELDREKAQLEKEEKRLTMEIKKAARENQMTTVKILAKDLVRTRQHVAKFVEMRSHLQGVALKLQTLKSHEAMASAMQSTAKAMAKMNKAVNVQTITKMLADFERENARTEMMQEAMGDAIDDAMADETAEEEEDRVVNQVLDEIGISFGEELPEAAA-----GTISHAESESGKVAVAAGASDDPALSDLEARLNNLKR 221          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|223994509|ref|XP_002286938.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978253|gb|EED96579.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 236.498 bits (602), Expect = 2.969e-75
Identity = 136/233 (58.37%), Postives = 167/233 (71.67%), Query Frame = 0
Query:    9 MGNMWAK-KPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAP-------GAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRR 233
            MGN++ K KPLKE +RENKRMI RAIRELDRE  +L++ E++L ++IKK A+ENQM AVK MAKDLVRTR Y TKFIEMRS LQG ALKL+TV+SH+AMA AM S   AM  MNK VNVP++ K+M +F REN KSE+  E++GDA+DD M E  DEEE++RIVG VL E+G+DM +A+P AP        AVP      A      G       G DP ++DLEARLNNL+R
Sbjct:    1 MGNIFGKEKPLKEQLRENKRMITRAIRELDRETRSLQREEQRLTLEIKKMARENQMKAVKIMAKDLVRTRQYITKFIEMRSQLQGCALKLQTVKSHQAMAEAMSSTAKAMSKMNKAVNVPSINKMMAEFERENMKSEMMQELMGDAIDDIMDEN-DEEEEDRIVGQVLDEIGIDMNEAIPNAPAMGLGASAAVPEDGGKVAVGIGETGGGGVSDGGEDPALSDLEARLNNLKR 232          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|1072238979|gb|OEU23706.1| (Snf7-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 235.728 bits (600), Expect = 4.750e-75
Identity = 130/230 (56.52%), Postives = 162/230 (70.43%), Query Frame = 0
Query:    9 MGNMWAK-KPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGA----DPTMTDLEARLNNLRR 233
            MGN+  K KPLKE++RENKRMI RAIRELDRE+  LE+ EKKL M+IKK AK  QMG VK MAKDLVRTR Y TKFIEMRSHLQG ALKL+TV+SH AMA AM+S  SAM  MNK V+VPA+ K+M DF +EN K+E+  E++GDA+DD +  E +EEE+E IV  VL E+G+   +   + P A P  A     +  +G     +  G     DP +++LEARLNNL+R
Sbjct:    1 MGNILGKDKPLKEVLRENKRMITRAIRELDREKTGLEREEKKLTMEIKKCAKAGQMGPVKIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHHAMAEAMKSTASAMHKMNKAVDVPAINKMMQDFEKENMKTEMMQEIMGDAIDDVLGGEENEEEEEAIVNQVLDEIGISFGE---DLPSAAPTNAIGAQESAPTGKVAMSETPGGGPSDDPALSELEARLNNLKR 227          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|1210527987|dbj|GAX13102.1| (charged multivesicular body protein 2A [Fistulifera solaris])

HSP 1 Score: 235.343 bits (599), Expect = 6.664e-75
Identity = 122/227 (53.74%), Postives = 165/227 (72.69%), Query Frame = 0
Query:    9 MGNMWAK-KPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPE-APGAVPNTATATAAATSSGGQREPQALGADPTMTDLEARLNNLRR 233
            MGN+  + KPLKE++RENKRMI RA+RELDRE+  LEK EK+L M+IKK A+ENQM  VK +AKDLVRTR +  KF+EMRSHLQG ALKL+T++SHEAMASAM+S    M  MNK VNV  +TK++ DF REN ++E+  +++GDA+DDAM +E  EEE++R+V  VL E+G+   + +PE A G + +  + +     + G  +      DP ++DLEARLNNL+R
Sbjct:    1 MGNLLGRDKPLKEVLRENKRMITRAVRELDREKAQLEKEEKRLTMEIKKAARENQMTTVKILAKDLVRTRQHVAKFVEMRSHLQGVALKLQTLKSHEAMASAMQSTAKVMAKMNKAVNVQTITKMLADFERENARTEMMQDVMGDAIDDAMADETAEEEEDRVVNQVLDEIGISFGEELPEAAAGMISHAESESGKVAVAAGASD------DPALSDLEARLNNLKR 221          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|219126389|ref|XP_002183441.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405197|gb|EEC45141.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 228.794 bits (582), Expect = 1.463e-72
Identity = 120/206 (58.25%), Postives = 155/206 (75.24%), Query Frame = 0
Query:    9 MGNMWAK-KPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPG-AVPNTATA----TAAATSSGG 208
            MGN+W + KPLKE++RENKRMINRA+RELDRE+  LE+ EK+L ++IKK AKENQM +VK MAKDLVRTR Y TKFIEMRSHLQG ALKL+TV+SH+AMA AM++   AM  MNK VNVP +TK+M +F +EN ++++  E++GDA+DDA+  EG EEE++RIVG VL E+G+   + +P   G  VP    A      AA + GG
Sbjct:    1 MGNVWGRDKPLKEVLRENKRMINRAVRELDREKAGLEREEKRLTIEIKKAAKENQMQSVKIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHQAMAEAMQNTAKAMGKMNKAVNVPTITKMMAEFEKENARTDMMQEVMGDAIDDALEGEGTEEEEDRIVGQVLDEIGITFGEELPATAGLTVPTNGVAEGPTKVAAVAGGG 206          
BLAST of EWM21627.1 vs. NCBI_GenBank
Match: gi|294897092|ref|XP_002775819.1| (Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983] >gi|239882172|gb|EER07635.1| Charged multivesicular body protein 2A, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 224.172 bits (570), Expect = 4.672e-70
Identity = 132/255 (51.76%), Postives = 171/255 (67.06%), Query Frame = 0
Query:    9 MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAMTEEGDEEEQERIVGAVLTELGLDMTDAVPEAPG-AVP--------------NTATATAAATSSG---GQREPQ------ALGADPTM------TDLEARLNNLRR 233
            MGN  +K  L+E MR NKRMINRA+RELDRER  L++NE+KLI DIK+ AK+NQMG VK MAKDLVRTR Y++KF+EM+SHLQG +L+++TV+S EAMA +M+  T AM  MNKQ+N+P L KIM +F  E EK  LT E++GD +DD + E GDEEE+E IVG VL E+G+DM + +  APG A+P                A A  AAT+SG   G+++ +        G DP         DLE+RLN L+R
Sbjct:    1 MGNQPSKLTLEEQMRANKRMINRAVRELDRERMGLQRNEQKLITDIKQAAKKNQMGPVKIMAKDLVRTRRYESKFMEMKSHLQGVSLRMQTVKSTEAMARSMKGCTQAMARMNKQLNLPQLQKIMQEFQEETEKMGLTEEVMGDTIDDVLGEVGDEEEEEAIVGQVLEEIGVDMNEVLANAPGSALPAGQKASVGVGKKTQQQAVAEGAATASGRTSGRQDNKENNRGNGDGGDPPSPPPPPENDLESRLNALKR 255          
The following BLAST results are available for this feature:
BLAST of EWM21627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101882|gb|EWM21627.1|1.898e-168100.00charged multivesicular body protein [Nannochlorops... [more]
gi|585101883|gb|EWM21628.1|6.565e-163100.00charged multivesicular body protein [Nannochlorops... [more]
gi|676378143|ref|XP_009032350.1|1.457e-8459.57hypothetical protein AURANDRAFT_18982 [Aureococcus... [more]
gi|299117086|emb|CBN73857.1|2.996e-8060.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210532124|dbj|GAX09283.1|3.536e-7655.75charged multivesicular body protein 2A [Fistulifer... [more]
gi|223994509|ref|XP_002286938.1|2.969e-7558.37predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072238979|gb|OEU23706.1|4.750e-7556.52Snf7-domain-containing protein [Fragilariopsis cyl... [more]
gi|1210527987|dbj|GAX13102.1|6.664e-7553.74charged multivesicular body protein 2A [Fistulifer... [more]
gi|219126389|ref|XP_002183441.1|1.463e-7258.25predicted protein, partial [Phaeodactylum tricornu... [more]
gi|294897092|ref|XP_002775819.1|4.672e-7051.76Charged multivesicular body protein 2A, putative [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9106rna9106Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications