EWM21630.1, cds9063 (CDS) Nannochloropsis gaditana

Overview
NameEWM21630.1
Unique Namecds9063
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:316973..317218 +
Alignment locationKK037251.1:317516..317696 +
Alignment locationKK037251.1:317830..317990 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21630.1
ProductChromosome transmission fidelity protein 8
Orig transcript idgnl|cribi|Naga_100012g45.1962.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:316973..317218 +
KK037251.1supercontigKK037251.1:317516..317696 +
KK037251.1supercontigKK037251.1:317830..317990 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018607Chromosome_trans_fidel_Ctf8
Homology
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|585101885|gb|EWM21630.1| (Chromosome transmission fidelity protein 8 [Nannochloropsis gaditana])

HSP 1 Score: 392.119 bits (1006), Expect = 6.145e-138
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MLIPIRLPALHGNDKNVESSTCAPSEASNTDVGNTSTSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVSRHLVQRGL 195
            MLIPIRLPALHGNDKNVESSTCAPSEASNTDVGNTSTSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVSRHLVQRGL
Sbjct:    1 MLIPIRLPALHGNDKNVESSTCAPSEASNTDVGNTSTSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVSRHLVQRGL 195          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|1140331594|ref|XP_019933318.1| (PREDICTED: chromosome transmission fidelity protein 8 homolog isoform X3 [Aedes albopictus])

HSP 1 Score: 78.5666 bits (192), Expect = 5.823e-15
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   37 TSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVM-----RKRKLSREGVT------PEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            T +++EW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G + +++KP LVM     RKR+++           PE       SQ +  D+T +  +       L  E + +        T Y V  VV+ K+LFK RPKP+++
Sbjct:   11 TGDIDEWCIVELQGDLEVRG-------DRIMDGQFIGDLLYNKYGQPILIIGHHILQGRLQKMDKPLLVMEKCETRKRRITEPAANNEPEDDPENETMLDVSQVSHLDSTIASSNRTVLDSTLAVEHKTV------PKTEYQVRAVVKHKILFKARPKPIIA 159          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|157134196|ref|XP_001663183.1| (AAEL012992-PA [Aedes aegypti] >gi|108870578|gb|EAT34803.1| AAEL012992-PA [Aedes aegypti])

HSP 1 Score: 77.7962 bits (190), Expect = 1.092e-14
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = 0
Query:   39 ELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSER--SSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            ++EEW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G + +++KP LVM K +  +  +T        A  +T  D +      S+  S      +  L  + +    T Y V  VV+ K+LFK RPKP+++
Sbjct:   22 DIEEWCIVELQGDLEVRG-------DRLMDGQFIGDLLYNKYGQPILIIGHHILQGRLQKVDKPLLVMEKCETRKRHITEPSNEEDDAENETMLDVSQISHLDSTLASSNRTVLDSTLAVEHKTVPKTEYLVRAVVKHKILFKARPKPIIA 165          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|1121167181|ref|XP_019529178.1| (PREDICTED: chromosome transmission fidelity protein 8 homolog [Aedes albopictus])

HSP 1 Score: 76.6406 bits (187), Expect = 3.023e-14
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 0
Query:   37 TSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVT------------PEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            T  ++EW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G + +++KP LVM K +  +  +T            PE       SQ +  D+T +  +       L  E + +        T Y V  VV+ K+LFK RPKP+++
Sbjct:   11 TGNIDEWCIVELQGDLEVRG-------DRIMDGQFIGDLLYNKYGQPILIIGHHILQGRLQKMDKPLLVMEKCETRKRRITEPAPNNTEGDDEPENETMLDVSQVSHLDSTIASSNRTVLDSTLAVEHKTV------PKTEYQVRAVVKHKILFKARPKPIIA 160          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|157134998|ref|XP_001663395.1| (AAEL013202-PA [Aedes aegypti] >gi|108870344|gb|EAT34569.1| AAEL013202-PA [Aedes aegypti])

HSP 1 Score: 76.2554 bits (186), Expect = 4.169e-14
Identity = 46/153 (30.07%), Postives = 75/153 (49.02%), Query Frame = 0
Query:   37 TSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSER--SSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            T ++EEW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G + +++KP LVM K +  +  +T           +T  D +      S+  S      +  L  + +    T Y V  VV+ K+LFK RPKP+++
Sbjct:   10 TGDIEEWCIVELQGDLEVRG-------DRLMDGQFIGDLLYNKYGQPILIIGHHILQGRLQKVDKPLLVMEKCETRKRHITEPSNEEDDEENETMLDVSQVSHLDSTLASSNRTVLDSTLAVEHKTVPKTEYLVRAVVKHKILFKARPKPIIA 155          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|1140331588|ref|XP_019933317.1| (PREDICTED: uncharacterized protein LOC109623265 isoform X2 [Aedes albopictus])

HSP 1 Score: 77.7962 bits (190), Expect = 1.012e-13
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   37 TSELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVM-----RKRKLSREGVT------PEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            T +++EW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G + +++KP LVM     RKR+++           PE       SQ +  D+T +  +       L  E + +        T Y V  VV+ K+LFK RPKP+++
Sbjct:  139 TGDIDEWCIVELQGDLEVRG-------DRIMDGQFIGDLLYNKYGQPILIIGHHILQGRLQKMDKPLLVMEKCETRKRRITEPAANNEPEDDPENETMLDVSQVSHLDSTIASSNRTVLDSTLAVEHKTV------PKTEYQVRAVVKHKILFKARPKPIIA 287          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|780122547|ref|XP_001184483.3| (PREDICTED: LOW QUALITY PROTEIN: chromosome transmission fidelity protein 8 homolog [Strongylocentrotus purpuratus])

HSP 1 Score: 74.3294 bits (181), Expect = 1.223e-13
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 0
Query:   42 EWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            EW L+EL G +        +   E L G  +GDL F     PVL+IG H L G++  L KPF+V+ K + + + +        G     A D   S+       +G G +  L + D    DT Y V  V+++K++FK RPKP+++
Sbjct:   17 EWMLIELQGAIE-------SPDNEQLTGRSIGDLHFNLKGVPVLIIGHHILYGKVTDLEKPFIVLMKNENAAKAI-------DGDHASDAMDVDSSQ-------DGNGRDDTLYQQD----DTYYYVNAVIKKKMIFKARPKPIIT 137          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|1113746067|ref|XP_014461657.2| (PREDICTED: chromosome transmission fidelity protein 8 homolog [Alligator mississippiensis] >gi|1011605493|gb|KYO42258.1| chromosome transmission fidelity 8-like protein [Alligator mississippiensis])

HSP 1 Score: 72.4034 bits (176), Expect = 3.855e-13
Identity = 51/148 (34.46%), Postives = 67/148 (45.27%), Query Frame = 0
Query:   40 LEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            LEEW LVEL G +        A    GL G  LGDL + +   PVL++G H L G+ VRL KPF V+ KR               GA +Q  AD +P+                          T Y V  +++ KLLFK RPKP+++
Sbjct:   16 LEEWVLVELQGEIQ-------ARCSAGLAGNLLGDLHYTSQGVPVLIVGHHILYGKTVRLEKPFAVLTKR---------------GAGEQ-GADPSPA--------------------------THYLVTALIKTKLLFKTRPKPIIT 114          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|170041190|ref|XP_001848356.1| (conserved hypothetical protein [Culex quinquefasciatus] >gi|167864721|gb|EDS28104.1| conserved hypothetical protein [Culex quinquefasciatus])

HSP 1 Score: 72.7886 bits (177), Expect = 7.433e-13
Identity = 46/151 (30.46%), Postives = 73/151 (48.34%), Query Frame = 0
Query:   39 ELEEWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSER--SSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            ++EEW +VEL G L   G       +  + G  +GDL +    +P+L+IG H L+G   +++KP LVM K     +     + +      +T  D +      SS  S      +  +  + +    T Y V  VVRQK+LFK RPKP+++
Sbjct:    8 DIEEWCIVELQGDLEVRG-------DRMMDGQFIGDLLYNKYGQPILIIGHHILQGRCQKIDKPLLVMEKCCTRGKQQQQRRTQDDDEDNETMLDVSQVSHLDSSIASSNRTVLDSTVAVEHKTVPKTEYLVRAVVRQKVLFKARPKPIIA 151          
BLAST of EWM21630.1 vs. NCBI_GenBank
Match: gi|390341261|ref|XP_001199744.2| (PREDICTED: chromosome transmission fidelity protein 8 homolog [Strongylocentrotus purpuratus])

HSP 1 Score: 72.4034 bits (176), Expect = 7.438e-13
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 0
Query:   42 EWSLVELNGTLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLNKPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGDEGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVS 187
            EW L+EL G +        +   E L G  +GDL F     PVL+IG H L G++  L KPF+V+ K +               A++    D          S +G G +  L + D    DT Y V  V+++K++FK RPKP+++
Sbjct:   17 EWMLIELQGAIE-------SPDNEQLTGRFIGDLHFNLKGVPVLIIGHHILYGKVTDLEKPFIVLMKNE--------------NAAKVIDGDHASDAMDVDSSQDGNGRDNTLSQQD----DTYYYVNAVIKKKMIFKARPKPIIT 137          
The following BLAST results are available for this feature:
BLAST of EWM21630.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101885|gb|EWM21630.1|6.145e-138100.00Chromosome transmission fidelity protein 8 [Nannoc... [more]
gi|1140331594|ref|XP_019933318.1|5.823e-1530.25PREDICTED: chromosome transmission fidelity protei... [more]
gi|157134196|ref|XP_001663183.1|1.092e-1430.46AAEL012992-PA [Aedes aegypti] >gi|108870578|gb|EAT... [more]
gi|1121167181|ref|XP_019529178.1|3.023e-1429.45PREDICTED: chromosome transmission fidelity protei... [more]
gi|157134998|ref|XP_001663395.1|4.169e-1430.07AAEL013202-PA [Aedes aegypti] >gi|108870344|gb|EAT... [more]
gi|1140331588|ref|XP_019933317.1|1.012e-1330.25PREDICTED: uncharacterized protein LOC109623265 is... [more]
gi|780122547|ref|XP_001184483.3|1.223e-1332.19PREDICTED: LOW QUALITY PROTEIN: chromosome transmi... [more]
gi|1113746067|ref|XP_014461657.2|3.855e-1334.46PREDICTED: chromosome transmission fidelity protei... [more]
gi|170041190|ref|XP_001848356.1|7.433e-1330.46conserved hypothetical protein [Culex quinquefasci... [more]
gi|390341261|ref|XP_001199744.2|7.438e-1331.51PREDICTED: chromosome transmission fidelity protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9093rna9093Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications