rna9093, rna9093 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9093
Unique Name	rna9093
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2187
Alignment location	KK037251.1:316903..318104 +

Link to JBrowse

Properties


Property Name	Value
Product	Chromosome transmission fidelity protein 8
Orig transcript id	gnl\|cribi\|Naga_100012g45.1962.mrna
Orig protein id	gnl\|cribi\|Naga_100012g45.1962
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:316903..318104 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g45	gene8818	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9093	rna9093-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21630.1	cds9063	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:316903..318104+
coding sequence from alignment at KK037251.1:316903..318104+

mRNA sequence

>rna9093 ID=rna9093|Name=rna9093|organism=Nannochloropsis gaditana|type=mRNA|length=2187bp
GGACGAGGACGATAGGGGACGGACATCCTGCTCCCTCGACCCGCAAGAAC
ACATTTCGCACGGTAGACTGGGCCTTTTGAGCGCGAGTCGTCGTGAAGCT
TTGGTTTCTCGGTTTTGGTTTCTGTGGTATGAGCTACGACACGTTGGCAT
GCAGGGCCTCGGTCGAGGTCCTCCCCTTGGATGTCTCCAAGCATGGCACT
AGCAAGGTCAAGAAGTGTGTGCAACATATTCTTTTGATGAAATGTGATGA
ACAATCTTCAGACTTACACAATTGAAGGGCTGGTCATGCTTTTTGAACGA
TTGAAGGCACCCACACGTATTGCTCCATCGCCGTATGTAATTCACCGCGC
ATAATGCCCCCAAAAACACAGAGCCTGCAGAGTTAGTGTGCGCAGTGCCG
AAAATAGGAAGAACAGCAACTGGTGGGAAATAAAAGAGGGAGAGCGGCGC
GTGGGTGACCCATCCATCGCCCGCTCCCGGCCAAGTCCTCTCGCCTCGCA
CAGCCCTGACGCCGCTGCTCACGCCTCGCTTCTCCTCCCAGCAACCTCTA
TATCATCAGTATGCCAGTCGTCATGGGCATCTGGAATGTATTTTACACCC
AACTTCGTGCCTGGACTTACATACCCCTTGGCAGCTACATCCAGTTCCTG
CCTCGAATGAGGAACGGTGAGACCGCCGCCGAGCTGGAGGGCGAGAACTT
CCCCCTGGTGGGGGACCTCGTGGACGGTGTCCTCGTCGCCGCCTGTTTCA
CGATCTTGCGCGTTCTTCTCACGCGCCTCGTGTTCCAGCCGGCGGGGCGG
GGCATCATGAAGCACTCCTACTTCCGCATGGTCCGAGACCCGCGGCTGGA
GCGTGTCCTGGACCGCGACCCGTTGCCGTCCGCCAAGAAGATCGCGGGGA
TGGCGCGCGAGGTCAAAAGTACGCCAGCGGCGGTCTCAGCCTACTGTCGT
CGCGCGCGGAACCGAGGGCGGGAAGAGGCGGCCCTGCACAAATTTAACGA
GGTCAGCTGGAAGCTCCTCTGCCACGTGGTCCTGACCTGGTACGGCGCCG
TGGCCGTACTCGCGCGGGAACGATGGTGGTACGACGTGGACTCCTGCTGG
GAGCGCTACCCGCACATGGTGAACTCGAAGGCGGCGTATTGGTACTACAT
GCTGGAATTTGGGGCCTTCGGACACGAGATGATGGCGATTTTCTGGGAGG
CACGTCGCTCGGACTTCTGGGCCATGCTCACCCACCACGTAGCCACCCTG
CTCCTGATCGCCGGCTCCTACACCTGCAACTTTTTGCCCATCGGCTGCCT
TGTTATGATCGTCCACGATATCGCCGACGTGTTTTTGGAGCTGGCCAAGC
TCTTCAACTACATGAGCAAAGCCCGGCCATGGGCCAAGCGACTCACGGAC
GCGCTCTTCGTCCTCTTCGCTCTCGTCTTCCTGGTCACGCGCCTCCTCGT
CTTCCCCTTCCGGGTATGGTGGGCCAACTCGATGAAGATGCCCCGCAAGT
ACTTCGGGTACCACTACACGGGCATTGGGGTCCTGAACGTCTTCTGCGTG
GTCCTGATCGTCCTCCACGCCTACTGGATGTTTTTGATCCTGCGGATGGC
CGTGAAGATGCTGGCGAGCGGGGAGGTGTCCAACGATACCCGGAGCGACG
ACGAGGAGGAGCTGGAGGCCTCGGACGGGGAGAAGGAGGACTAGGTAGTA
TCGGTGTGGGGCGGGGTTGGAGGAGGGAAGAGAGTTAGGTGACGAGAGGG
ACGAGCAGGACCCGACGCGCCAAAGCCCAAGGCCCATGAAGGCTTTTATA
TAGGAGGGATGACACATAGTGGGAGGCGGTGGCCGAGGAGGTCGGGGAGG
TAGGGAATGGGGAGGAGGGGGGGGGAGCTGAGGGAGGGGAAGGCAACTCT
TCTGAGTGAGAGCTCAGACTTGTAGAACGTCAGCGAACGCGACAGGCACG
GTAGAGGGGCGCCTAAGCACGATAATCGTTGATGCGTTAGTGTCTTTTGC
AAGCAACCGCAGAAAGGAGGTAGAATGGGACCAAAGTAAACAAGTCAAGG
CACCTAAGAGAGGCCCTCTGGCTCGGACAGGAGGGGACGTTCGCTCTTGT
TAGGCACTATTTGGATCCGATGCCCCACGGTTGCGTGCAGACTGAAGCGC
TCTTGCAGATGTATTTCGCTGCATCCCCTCGCCCTCG

protein sequence of rna9093

>rna9093-protein ID=rna9093-protein|Name=rna9093|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MLIPIRLPALHGNDKNVESSTCAPSEASNTDVGNTSTSELEEWSLVELNG
TLNCSGRGKPASTEEGLGGLPLGDLSFPALNKPVLVIGAHKLEGEIVRLN
KPFLVMRKRKLSREGVTPEKRRTSGASQQTAADTTPSERSSAGSPEGLGD
EGQLIRDDERGEDTAYDVVGVVRQKLLFKERPKPLVSRHLVQRGL

mRNA from alignment at KK037251.1:316903..318104+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9093 ID=rna9093|Name=rna9093|organism=Nannochloropsis gaditana|type=mRNA|length=1202bp|location=Sequence derived from alignment at KK037251.1:316903..318104+ (Nannochloropsis gaditana)
TCAAAGATTTTTTACCCCCCGTGCGAGCGGATCCCTTTTTAGTAAGCGAC
TCGGTCAGCAACTTATCGCCATGCTTATTCCGATTCGCTTGCCCGCCTTA
CATGGGAACGATAAAAACGTTGAAAGCAGCACATGCGCACCAAGTGAAGC
ATCGAATACTGATGTTGGAAACACCTCGACATCAGAACTGGAAGAGTGGT
CCTTGGTAGAACTGAATGGCACTTTAAATTGCAGTGGAAGAGGCAAACCT
GCTTCCACTGAGGAAGGGTTGGGTGGTTTGCCTTTAGGCGACCTATCATT
TCCCGCGCTAAACAAGGTAACATAGTAAAGTCGGTTTGGGTCCTGCAAAT
CCATACGGCTGAGTGATCTAGATGTAATGCTAGAGTGATCTCATTCAATC
ACAATCATGGGAGGGGCGAGTACATGAAAGGACTTGACGTCGTTTTCAGA
CCAGGGCTTGCTCCTGCGTTCTTATGTGAAAAGCATACTAGAGCTGGAGG
ATCCTTGCCTGGCTCTTGCGGTATTTGAACGAGACTTGTACTCATTTGTG
TCGCATCGTCCTTCCTTGACCGATTTCTACATCCACCCATGCGTTTGTGG
CGCCCCCCCGCAGCCCGTGCTGGTGATAGGCGCACACAAGctggaaggag
aaatcgTCCGCTTAAACAAGCCGTTCCTCGTGATGCGTAAACGGAAACTT
TCCAGAGAAGGAGTGACACCTGAGAAGCGGCGAACGAGCGGAGCTAGTCA
ACAAACGGCAGCGGATACGACTCCTTCAGAGAGAAGCAGCGCAGGTGAGA
TACTCgaggcaaggggaggtggcgggacgTATTTCTCAGGGCGTATATCG
ATGTCGGGTCGTCATGCACGCGCGACTTCCTGCTATCATCTCATTCTGCG
CGGTCTTGCCCCTCTGACGTCTAACAGGGAGTCCGGAGGGTCTAGGCGAC
GAAGGGCAGCTCATTCGGGACgatgagaggggagaggacacGGCGTATGA
TGTCGTCGGTGTGGTGCGTCAGAAGTTACTGTTCAAGGAGCGACCCAAAC
CCTTGGTATCCCGGCATCTGGTGCAGCGGGGATTGTAGCGGTGTGCCGAG
ATGAACGAAAGGATGCGGTGCATGTATCATCGAAGTGCCACCTGTACGCA
CTTGGACCAGATACATTTTAAAGAAAGAATTTTTCTTACTAAAAGCCCGA
TG

Coding sequence (CDS) from alignment at KK037251.1:316903..318104+

>rna9093 ID=rna9093|Name=rna9093|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at KK037251.1:316903..318104+ (Nannochloropsis gaditana)
ATGCTTATTCCGATTCGCTTGCCCGCCTTACATGGGAACGATAAAAACGT
TGAAAGCAGCACATGCGCACCAAGTGAAGCATCGAATACTGATGTTGGAA
ACACCTCGACATCAGAACTGGAAGAGTGGTCCTTGGTAGAACTGAATGGC
ACTTTAAATTGCAGTGGAAGAGGCAAACCTGCTTCCACTGAGGAAGGGTT
GGGTGGTTTGCCTTTAGGCGACCTATCATTTCCCGCGCTAAACAAGCCCG
TGCTGGTGATAGGCGCACACAAGctggaaggagaaatcgTCCGCTTAAAC
AAGCCGTTCCTCGTGATGCGTAAACGGAAACTTTCCAGAGAAGGAGTGAC
ACCTGAGAAGCGGCGAACGAGCGGAGCTAGTCAACAAACGGCAGCGGATA
CGACTCCTTCAGAGAGAAGCAGCGCAGGGAGTCCGGAGGGTCTAGGCGAC
GAAGGGCAGCTCATTCGGGACgatgagaggggagaggacacGGCGTATGA
TGTCGTCGGTGTGGTGCGTCAGAAGTTACTGTTCAAGGAGCGACCCAAAC
CCTTGGTATCCCGGCATCTGGTGCAGCGGGGATTGTAGATGCTTATTCCG
ATTCGCTTGCCCGCCTTACATGGGAACGATAAAAACGTTGAAAGCAGCAC
ATGCGCACCAAGTGAAGCATCGAATACTGATGTTGGAAACACCTCGACAT
CAGAACTGGAAGAGTGGTCCTTGGTAGAACTGAATGGCACTTTAAATTGC
AGTGGAAGAGGCAAACCTGCTTCCACTGAGGAAGGGTTGGGTGGTTTGCC
TTTAGGCGACCTATCATTTCCCGCGCTAAACAAGCCCGTGCTGGTGATAG
GCGCACACAAGctggaaggagaaatcgTCCGCTTAAACAAGCCGTTCCTC
GTGATGCGTAAACGGAAACTTTCCAGAGAAGGAGTGACACCTGAGAAGCG
GCGAACGAGCGGAGCTAGTCAACAAACGGCAGCGGATACGACTCCTTCAG
AGAGAAGCAGCGCAGGGAGTCCGGAGGGTCTAGGCGACGAAGGGCAGCTC
ATTCGGGACgatgagaggggagaggacacGGCGTATGATGTCGTCGGTGT
GGTGCGTCAGAAGTTACTGTTCAAGGAGCGACCCAAACCCTTGGTATCCC
GGCATCTGGTGCAGCGGGGATTGTAGATGCTTATTCCGATTCGCTTGCCC
GCCTTACATGGGAACGATAAAAACGTTGAAAGCAGCACATGCGCACCAAG
TGAAGCATCGAATACTGATGTTGGAAACACCTCGACATCAGAACTGGAAG
AGTGGTCCTTGGTAGAACTGAATGGCACTTTAAATTGCAGTGGAAGAGGC
AAACCTGCTTCCACTGAGGAAGGGTTGGGTGGTTTGCCTTTAGGCGACCT
ATCATTTCCCGCGCTAAACAAGCCCGTGCTGGTGATAGGCGCACACAAGc
tggaaggagaaatcgTCCGCTTAAACAAGCCGTTCCTCGTGATGCGTAAA
CGGAAACTTTCCAGAGAAGGAGTGACACCTGAGAAGCGGCGAACGAGCGG
AGCTAGTCAACAAACGGCAGCGGATACGACTCCTTCAGAGAGAAGCAGCG
CAGGGAGTCCGGAGGGTCTAGGCGACGAAGGGCAGCTCATTCGGGACgat
gagaggggagaggacacGGCGTATGATGTCGTCGGTGTGGTGCGTCAGAA
GTTACTGTTCAAGGAGCGACCCAAACCCTTGGTATCCCGGCATCTGGTGC
AGCGGGGATTGTAG

Synonyms

Publications