rna9091, rna9091 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9091
Unique Name	rna9091
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1588
Alignment location	KK037251.1:311992..314397 +

Link to JBrowse

Properties


Property Name	Value
Product	Poly A polymerase regulatory subunit
Orig transcript id	gnl\|cribi\|Naga_100012g42.1957.mrna
Orig protein id	gnl\|cribi\|Naga_100012g42.1957
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:311992..314397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g42	gene8816	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9091	rna9091-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21625.1	cds9061	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:311992..314397+
coding sequence from alignment at KK037251.1:311992..314397+

mRNA sequence

>rna9091 ID=rna9091|Name=rna9091|organism=Nannochloropsis gaditana|type=mRNA|length=1588bp
TTCTCCTACCCAGAATCACTCCGGTACATTTGCCCAACTCGACTCATGCG
CAGATCCCTCGCCCGATCTTGCCCCTCTCCCCCCTCGCAGCATCAGCTCG
ACAGAGGATCGAGGCGACCCTCCATCATGCGGACAGCCCGGTCCTGCCTT
ACCCTGGCCATGTCCTTAGTCAGTCTGGTATTGACTACGACACCAGCTAT
GGCATTCTTCAACGCGGGGGTCTGCAGGCAATTTGGAACCTTACAACCCT
TCCGTCCTCCCCAACCCACTTTATCCGTCTCCGCCCGGCGCGCAGCCGTG
GTGATGATGAGCGACTTGGACCGTGCTGCCAAGCTCCGTCAGGAAGCTGA
AAAACTTGAGCAAGAGCTCAAGGCTGTGCAAGCTTCGCGGCCCAAGCCTG
TCGTGACGGAAGAGAAGCCCGCGGGCCCCACCCCCCGGTATCTATCCTTT
GAGCAACTCAAAGCAGAAGTCGAGCAAGCCATGGCGTCGTCCGCGGTCGT
TGACACCGCTTTGAAACAATTAAAGGAGTCAGGGGCCCTGACTAAATTTG
AGAGCGGCAGTGCCAAAGGTTTTCGACGGTACAGTGCGGAACAATTCGAG
CAGGCCACCGGGTTTCCCCCCCAGGACGTGGAGTCGGGCGGGACGCAGGA
CGACCTCAAGTGGGCGCTGGGGGCAGTGATGGCGGCGAGCAGTCTCGCGG
TGGTGGGCGGAGGCTTTCTGGGGGGGTTCGCAGGCACCTTGCTCGTGTAC
CTCTTCCTGCTGATCCCTATCACCTTCATCGGGATCGGGTCCGTGGCGCC
AGGCGTGATCTCGGTCTTCGTGGTCCTGGTCAGCAACCTCTTGGACGGGA
AAGCTGCCGAGCGGAAGACAACGCATCAAGCCGCTCGTTTCTTGACTGGG
TACCTGCTGGGGCTTCCCATCGAGTCCGTGAAGACGGACGCCGAGGGTGG
CACCACCTTCATCAAGTACTACGACACTATGGACGGGAATTTCAAAGATT
TGGGTGCCCAAGCAGCGGCGGGACCGGGACCTGAGCCGCGAAAAAAATTT
GGGCAGGAGGATATCTTGGGCCACGCGGTGTTGGCGATCGCGGGAAGCGT
CGCAGAGCGGATGGAGTACGGGAAAGTTATCGACCGGCAGGCGGACTTCT
TGTACCTGGTGGCCCTGATGGATTTGGTCAGACCCTCCTTGCGGGCGGGG
CAAAAGAACGACCTGGTGCTCTACAGTGCCTTAACGGCCCACAAGCTCTT
GACAGCGAACAAGGGTAAGCTGGAGAGGCTGGCGGAGAAGATGGCCGCGA
AGGCCAGTCTGGCCGAGATTGTGGCCGTCATGGAGAGTTAAAGAACACGG
GAGGGGGGGGGGGGTTGAGGGGGGGAACTAGGCACATGGGGTGCCTTTGT
ATGCCAAACTTGGGCGTGGGGTCTATTAGAGAAAGAGAGGGGATCAGGAA
GGAGCGGCGAAGAAAGGAGAGATGACAGCGAAGGGACGGGTGGCGGCTGC
AAGCATGCCTCGCGACCATACCGTGTCATTATTTTCAGTTCTTTACAAAT
CGTGCTTTGCAATGGATGCAACAATCAGACTTCCCACA

protein sequence of rna9091

>rna9091-protein ID=rna9091-protein|Name=rna9091|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKE
GISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAK
VGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPT
TTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGG
EEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAG
AAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALARE
YAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPW
RAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGD
GGGGEGRSEGGDVG

mRNA from alignment at KK037251.1:311992..314397+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9091 ID=rna9091|Name=rna9091|organism=Nannochloropsis gaditana|type=mRNA|length=2406bp|location=Sequence derived from alignment at KK037251.1:311992..314397+ (Nannochloropsis gaditana)
ggcaagatCGGGCGAGGGATCTGCGCATGAGTCGAGTTGGGCAAATGTAC
CGGAGTGATTCTGGGTAGGAGAAAGTCAACAGTAACCACTTTCACGTATA
AATTGATCTGGatagggaggcagggaacCCCTACGCAGGAGACAGGCATT
CGGACTCGCGGCCCGTGCAAGCGTCACTCTCCCTGTTCCTCGCTGGGTCT
GGCATGGTCCTTGAGATGACATGCACAGGACAATCGCGCTTCAAGCAGAG
AAAGTGGATGAAAACAACGACGCGTGCATGCTGCGCAGTTCTGTTGGCGT
GCCACTTGCGCCTGCGTTTCTTTCTCTTATGTACTGCATGGACAAGCACA
TCTAGTCaattacctcctccctccccttgcctaGATCAAAGCCCTAAGCC
ATTGTCGCTATAATGCTTGTTAGTAGTGACGGAAATAAATGACAAGCAAC
ACGGTGGGTTCGAAGAAAAACGCGGCGCTGGCATCTGCATCAGGCGCAAC
GTGGATAGAGGACGAAAAATCCTGGAGCGACTACCAAGGTTTGTCGGTGC
TAAAGCGGATGGATATGATCAAAAGtgtgctgaaggagggcataAGTCAA
AGCCGAGACGAGGCAACTGCAGGTGACTACGTGATGGGGAATACCATGAA
ATATCTGCAAGAGGTATTGCCTGCAGACCTGCGCACGTCATTGCCTTGGA
GCGCCCTGGTCAATTTGATCAACACGGGCTTGGCAAAAGTGGGATGGTCA
ATAACGGGGGCACATGAGAGCGAGGCgccagagagagggaagacgggaaa
GGATTGTGAAGCGGCTCTGACAGAGGCTTTGCAGGGTGTGACACACTGGT
TGCCAGACGCGGCACTGAATCACACCGCAACGCCCACCACGACCCAAACC
GTCCACGGACCCGTCAAGAGCTGGCAAGACTACCGAGTGAGTGCCTTTCC
TGGAAATGATTGGCGGGGCCTTTGTGCGCGTCGATTCCAGATGTCTTCTG
CTGGATCCCTCCTTTtgtttcctttttttctttactGGCGCTTTTGTCCG
TCGTCTAGCTCCCTCGTACTAGCGCCAAggttccccctctctcctcatca
tttcctcccttgtcctcctctccctcttcatcttgACAGGCCATGTGGCC
CGTTCACTATCCCGACGAAGATATCCTGCGCgttctctcccccaccttcc
cccgccgGCCCTACCGGTCCCgccaagatgaagaaggaggggaggagggg
aaagagggagggcgggagggcgaggcttCGCCGCCGTCGATGACCCGCGA
CCCCCACTGGGGCCAGCGCAAGCTCTTCCTGAACGAGTTAGAGCTGCTGA
CCAGGtatgcagaggagggggaccTGGTGCTGTACGCGGGCGCGGCCCCC
GGGTGGCACCTGGAGCTATTGTCGCGGCGCTTTTTCCCAGGCGTGGCCTT
CGTACTTGTGGACCCGGCGCCCTTCCGCATCGAAGCGAGTGAGAGGGTGA
AGCTGGTGGCGGGCCTGATGACGGATGCGTTGGCGCGAGAGTATGCAggt
gagagaaggagaaaagaagggaaggccgGGCAGTTCGTGAAGGAAATGCC
AAGTTCTGACGTGCGTCTGCGACGGATATACAGGCCGCGAGAACCTGATA
TTCATCAGCGACATTCGGCGGACGTACGCTTCAGAGGACCTGATCCTCGA
GGACATGCGGGAGCAAGAGCGCTGGCACGAGATGATGGGGCCCAAGGTCT
CGATGATGAAGTTCCGGCTGccgtggcgggcgggggagacggagtacctg
gacggggaggtgtgGACCCAGCCGTACGCCAAGGCGCGGTCGACGGAGAC
caggctggtggtggagggcccgaggaagggaggggggcaggaaggggagg
agggagggacgacgaaggagggggatgggggagggggggagggaagaagc
gagggCGGCGACGTTGGGTGAATCAAGAGTACGAGGAGCAATGTTACTTC
TTCAACACGGTGGTCCGACCGGTCAGACACGTCCATGGGGTGCGTGGTGC
GGCCTTGGGGGAGACGTGGGACTACgcgcgggaggtggagattTGGCGGG
AGTATCtacggcgaggagggggcccagcggggagggaagaggagaacgag
AGGATTGCGCGGCTCTCGGTGGTACTGACGGAGCATTTGGGGGGGgcaca
agggagggagtggttGCGGCGGGTGGAGCCGCGGctgcgcggggaggggg
aggaggggaaggggcgaggtcgaggacaaggcccAGAAGGGTCGGGAGGC
CGCAGGCATGGGTATGGCCAGGAACGTCGGCGCAAACGGTCCCGGGACAG
GTGGCagagggggccagggagggaaggggggagagagggtcgAGCATCGA
AGAACC

Coding sequence (CDS) from alignment at KK037251.1:311992..314397+

>rna9091 ID=rna9091|Name=rna9091|organism=Nannochloropsis gaditana|type=CDS|length=3735bp|location=Sequence derived from alignment at KK037251.1:311992..314397+ (Nannochloropsis gaditana)
ATGACAAGCAACACGGTGGGTTCGAAGAAAAACGCGGCGCTGGCATCTGC
ATCAGGCGCAACGTGGATAGAGGACGAAAAATCCTGGAGCGACTACCAAG
GTTTGTCGGTGCTAAAGCGGATGGATATGATCAAAAGtgtgctgaaggag
ggcataAGTCAAAGCCGAGACGAGGCAACTGCAGGTGACTACGTGATGGG
GAATACCATGAAATATCTGCAAGAGGTATTGCCTGCAGACCTGCGCACGT
CATTGCCTTGGAGCGCCCTGGTCAATTTGATCAACACGGGCTTGGCAAAA
GTGGGATGGTCAATAACGGGGGCACATGAGAGCGAGGCgccagagagagg
gaagacgggaaaGGATTGTGAAGCGGCTCTGACAGAGGCTTTGCAGGGTG
TGACACACTGGTTGCCAGACGCGGCACTGAATCACACCGCAACGCCCACC
ACGACCCAAACCGTCCACGGACCCGTCAAGAGCTGGCAAGACTACCGAGC
CATGTGGCCCGTTCACTATCCCGACGAAGATATCCTGCGCgttctctccc
ccaccttcccccgccgGCCCTACCGGTCCCgccaagatgaagaaggaggg
gaggaggggaaagagggagggcgggagggcgaggcttCGCCGCCGTCGAT
GACCCGCGACCCCCACTGGGGCCAGCGCAAGCTCTTCCTGAACGAGTTAG
AGCTGCTGACCAGGtatgcagaggagggggaccTGGTGCTGTACGCGGGC
GCGGCCCCCGGGTGGCACCTGGAGCTATTGTCGCGGCGCTTTTTCCCAGG
CGTGGCCTTCGTACTTGTGGACCCGGCGCCCTTCCGCATCGAAGCGAGTG
AGAGGGTGAAGCTGGTGGCGGGCCTGATGACGGATGCGTTGGCGCGAGAG
TATGCAgGCCGCGAGAACCTGATATTCATCAGCGACATTCGGCGGACGTA
CGCTTCAGAGGACCTGATCCTCGAGGACATGCGGGAGCAAGAGCGCTGGC
ACGAGATGATGGGGCCCAAGGTCTCGATGATGAAGTTCCGGCTGccgtgg
cgggcgggggagacggagtacctggacggggaggtgtgGACCCAGCCGTA
CGCCAAGGCGCGGTCGACGGAGACcaggctggtggtggagggcccgagga
agggaggggggcaggaaggggaggagggagggacgacgaaggagggggat
gggggagggggggagggaagaagcgagggCGGCGACGTTGGGTGAATGAC
AAGCAACACGGTGGGTTCGAAGAAAAACGCGGCGCTGGCATCTGCATCAG
GCGCAACGTGGATAGAGGACGAAAAATCCTGGAGCGACTACCAAGGTTTG
TCGGTGCTAAAGCGGATGGATATGATCAAAAGtgtgctgaaggagggcat
aAGTCAAAGCCGAGACGAGGCAACTGCAGGTGACTACGTGATGGGGAATA
CCATGAAATATCTGCAAGAGGTATTGCCTGCAGACCTGCGCACGTCATTG
CCTTGGAGCGCCCTGGTCAATTTGATCAACACGGGCTTGGCAAAAGTGGG
ATGGTCAATAACGGGGGCACATGAGAGCGAGGCgccagagagagggaaga
cgggaaaGGATTGTGAAGCGGCTCTGACAGAGGCTTTGCAGGGTGTGACA
CACTGGTTGCCAGACGCGGCACTGAATCACACCGCAACGCCCACCACGAC
CCAAACCGTCCACGGACCCGTCAAGAGCTGGCAAGACTACCGAGCCATGT
GGCCCGTTCACTATCCCGACGAAGATATCCTGCGCgttctctcccccacc
ttcccccgccgGCCCTACCGGTCCCgccaagatgaagaaggaggggagga
ggggaaagagggagggcgggagggcgaggcttCGCCGCCGTCGATGACCC
GCGACCCCCACTGGGGCCAGCGCAAGCTCTTCCTGAACGAGTTAGAGCTG
CTGACCAGGtatgcagaggagggggaccTGGTGCTGTACGCGGGCGCGGC
CCCCGGGTGGCACCTGGAGCTATTGTCGCGGCGCTTTTTCCCAGGCGTGG
CCTTCGTACTTGTGGACCCGGCGCCCTTCCGCATCGAAGCGAGTGAGAGG
GTGAAGCTGGTGGCGGGCCTGATGACGGATGCGTTGGCGCGAGAGTATGC
AgGCCGCGAGAACCTGATATTCATCAGCGACATTCGGCGGACGTACGCTT
CAGAGGACCTGATCCTCGAGGACATGCGGGAGCAAGAGCGCTGGCACGAG
ATGATGGGGCCCAAGGTCTCGATGATGAAGTTCCGGCTGccgtggcgggc
gggggagacggagtacctggacggggaggtgtgGACCCAGCCGTACGCCA
AGGCGCGGTCGACGGAGACcaggctggtggtggagggcccgaggaaggga
ggggggcaggaaggggaggagggagggacgacgaaggagggggatggggg
agggggggagggaagaagcgagggCGGCGACGTTGGGTGAATGACAAGCA
ACACGGTGGGTTCGAAGAAAAACGCGGCGCTGGCATCTGCATCAGGCGCA
ACGTGGATAGAGGACGAAAAATCCTGGAGCGACTACCAAGGTTTGTCGGT
GCTAAAGCGGATGGATATGATCAAAAGtgtgctgaaggagggcataAGTC
AAAGCCGAGACGAGGCAACTGCAGGTGACTACGTGATGGGGAATACCATG
AAATATCTGCAAGAGGTATTGCCTGCAGACCTGCGCACGTCATTGCCTTG
GAGCGCCCTGGTCAATTTGATCAACACGGGCTTGGCAAAAGTGGGATGGT
CAATAACGGGGGCACATGAGAGCGAGGCgccagagagagggaagacggga
aaGGATTGTGAAGCGGCTCTGACAGAGGCTTTGCAGGGTGTGACACACTG
GTTGCCAGACGCGGCACTGAATCACACCGCAACGCCCACCACGACCCAAA
CCGTCCACGGACCCGTCAAGAGCTGGCAAGACTACCGAGCCATGTGGCCC
GTTCACTATCCCGACGAAGATATCCTGCGCgttctctcccccaccttccc
ccgccgGCCCTACCGGTCCCgccaagatgaagaaggaggggaggagggga
aagagggagggcgggagggcgaggcttCGCCGCCGTCGATGACCCGCGAC
CCCCACTGGGGCCAGCGCAAGCTCTTCCTGAACGAGTTAGAGCTGCTGAC
CAGGtatgcagaggagggggaccTGGTGCTGTACGCGGGCGCGGCCCCCG
GGTGGCACCTGGAGCTATTGTCGCGGCGCTTTTTCCCAGGCGTGGCCTTC
GTACTTGTGGACCCGGCGCCCTTCCGCATCGAAGCGAGTGAGAGGGTGAA
GCTGGTGGCGGGCCTGATGACGGATGCGTTGGCGCGAGAGTATGCAgGCC
GCGAGAACCTGATATTCATCAGCGACATTCGGCGGACGTACGCTTCAGAG
GACCTGATCCTCGAGGACATGCGGGAGCAAGAGCGCTGGCACGAGATGAT
GGGGCCCAAGGTCTCGATGATGAAGTTCCGGCTGccgtggcgggcggggg
agacggagtacctggacggggaggtgtgGACCCAGCCGTACGCCAAGGCG
CGGTCGACGGAGACcaggctggtggtggagggcccgaggaagggaggggg
gcaggaaggggaggagggagggacgacgaaggagggggatgggggagggg
gggagggaagaagcgagggCGGCGACGTTGGGTGA

Synonyms

Publications