EWM21625.1, cds9061 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|585101880|gb|EWM21625.1| (Poly A polymerase regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 842.803 bits (2176), Expect = 0.000e+0 Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 0 Query: 1 MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG 414 MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG Sbjct: 1 MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG 414
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470309347|ref|XP_004364062.1| (hypothetical protein CAOG_03223 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 148.673 bits (374), Expect = 5.114e-37 Identity = 80/165 (48.48%), Postives = 101/165 (61.21%), Query Frame = 0 Query: 222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT-------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379 HWGQRKL L+E+E LT + G LV+YAGAAPG HLE LS FP + F VDPAPF + ++ +KL+ GL TD +A Y G+ L FISDIR E + DM Q RWH +M P SM+KFRLPW G TEYLDG+++ + +TE RL+ Sbjct: 106 HWGQRKLLLSEIEFLTLHGVPGQLVVYAGAAPGTHLEYLSS-LFPELYFHAVDPAPFTAKETDHIKLIQGLFTDEMASSYCGQRAL-FISDIRSADWQRQSDQEVEASVKWDMDAQMRWHLLMQPVRSMLKFRLPWAPGTTEYLDGDLYLPVWGPITTTEARLIT 268
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|765551590|gb|KJE92211.1| (hypothetical protein CAOG_003223 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 150.214 bits (378), Expect = 7.893e-37 Identity = 81/165 (49.09%), Postives = 102/165 (61.82%), Query Frame = 0 Query: 222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT--YASEDLILE-----DMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379 HWGQRKL L+E+E LT + G LV+YAGAAPG HLE LS FP + F VDPAPF + ++ +KL+ GL TD +A Y G+ L FISDIR D +E DM Q RWH +M P SM+KFRLPW G TEYLDG+++ + +TE RL+ Sbjct: 164 HWGQRKLLLSEIEFLTLHGVPGQLVVYAGAAPGTHLEYLSS-LFPELYFHAVDPAPFTAKETDHIKLIQGLFTDEMASSYCGQRAL-FISDIRSADWQRQSDQEVEASVKWDMDAQMRWHLLMQPVRSMLKFRLPWAPGTTEYLDGDLYLPVWGPITTTEARLIT 326
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|1129182376|gb|OLP89477.1| (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase [Symbiodinium microadriaticum]) HSP 1 Score: 150.214 bits (378), Expect = 1.322e-35 Identity = 79/179 (44.13%), Postives = 105/179 (58.66%), Query Frame = 0 Query: 222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR------------IEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT--------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVE 380 HWGQRKL L E+E LT Y E G V+YAGAAPG H+ LL++ FP + FVL+D PF I+ + R++ TD A+E+ E ++FISD+R + Y S+ + +DMR QERWH +M P S KFRLPW AG T+YL+G V + A +TE+RL VE Sbjct: 188 HWGQRKLMLAEIEFLTEYYERGSCVVYAGAAPGTHIRLLAK-MFPKLRFVLIDCRPFSDHLNKAAKELLWIDGTPRIRCEQKYFTDETAKEFEHSEGVLFISDVRTSKDADEGDDYPSQKEVEDDMRVQERWHLLMKPVASCFKFRLPWDAGTTKYLNGTVHLPVWGPATTTESRLFVE 365
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|923126593|ref|XP_013756763.1| (hypothetical protein AMSG_06709 [Thecamonas trahens ATCC 50062] >gi|906557564|gb|KNC50807.1| hypothetical protein AMSG_06709 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 146.362 bits (368), Expect = 1.830e-35 Identity = 85/213 (39.91%), Postives = 118/213 (55.40%), Query Frame = 0 Query: 176 EDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALAREYAGRENLIFISDIR----RTYASEDL---ILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379 E + R+L+P PR YR R S HWGQRKL ++E+E LT YA GD+V+YAGAAPG H L+ +F P ++F L DPA F + R+ + TD + YAGR+N++F+SDIR + E++ + ED Q+ WH+ + P+ SM+KFRLPW AG T+YLDG + + +TETRLVV Sbjct: 71 ESLDRILAPDAPREAYRRRNK-------------------SYKTVNHWGQRKLLMSEVEFLTLYARPGDVVVYAGAAPGAHTAWLADQF-PALSFELYDPADFVPGLGDHPRIGVHQEFFTDEICATYAGRDNVLFVSDIRTADWKVMGEEEVEKSVYEDQLRQQGWHDAIRPRYSMLKFRLPWGAGSTQYLDGAIHLPVWGPITTTETRLVV 263
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|514701969|ref|XP_004998552.1| (hypothetical protein PTSG_01078 [Salpingoeca rosetta] >gi|326430807|gb|EGD76377.1| hypothetical protein PTSG_01078 [Salpingoeca rosetta]) HSP 1 Score: 145.206 bits (365), Expect = 2.918e-34 Identity = 88/222 (39.64%), Postives = 120/222 (54.05%), Query Frame = 0 Query: 171 VHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILE---------DMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381 V + D +R L+ PR PYR R+ E HWGQRKL L+E+E L R+ V+YAGAAPG H+ L+R FP FV VDP+PF ++A +++ L TD LA E+ G EN++FISDIR DL+ + D Q RWH++M P SM+KFRL W+ G+TEYLDG+++ + +TE RL+V G Sbjct: 163 VSHTDLPFVRTLTDESPRMPYRRRRHE-------------------TKTVIHWGQRKLLLSEVEFLVRFGHLSKKVVYAGAAPGTHIVQLAR-MFPDHRFVCVDPSPFNDSLKACKQLLLRQEPFTDDLAHEFEG-ENVLFISDIRSV--DPDLVTDKETDKAVGGDQAAQMRWHDIMRPVASMLKFRLSWKPGKTEYLDGDIYLPVWGPITTTEARLMVTG 361
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470324885|ref|XP_004364306.1| (hypothetical protein CAOG_01438 [Capsaspora owczarzaki ATCC 30864] >gi|765549442|gb|KJE90063.1| hypothetical protein CAOG_001438 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 142.51 bits (358), Expect = 1.229e-33 Identity = 84/206 (40.78%), Postives = 116/206 (56.31%), Query Frame = 0 Query: 180 RVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLI----LEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381 R L P PR YR R+ E HWG+RK+ ++E+E L+ Y LV+YAGAAPG H++ L+ FFP + FV VDPAPF+I+ +E++ ++ LA+E+ G+ ++FISDIR + +D I DM Q RWHE+M P SM+KFRLPW G+T YLDGEV+ + +TE RLV Sbjct: 183 RTLRPDAPRMAYRRRKHETKSVI-------------------HWGERKMLMSEIEFLSLYGTPDRLVVYAGAAPGGHMQYLAS-FFPHLKFVGVDPAPFKIKQTEQISFRQQYFSNELAQEFLGK-GVLFISDIR---SPDDEIEAQAQADMAAQMRWHEIMQPHRSMLKFRLPWNEGQTMYLDGEVYLPVWGPITTTEARLVTHA 364
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470322444|ref|XP_004349242.1| (hypothetical protein CAOG_02492 [Capsaspora owczarzaki ATCC 30864] >gi|765550727|gb|KJE91348.1| hypothetical protein CAOG_002492 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 140.969 bits (354), Expect = 2.298e-33 Identity = 89/227 (39.21%), Postives = 121/227 (53.30%), Query Frame = 0 Query: 180 RVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDL---VLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYA---GRENLIFISDIRR----------TYASE-DLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGE----VWTQPYAKARSTETRLVVEGPRKG 385 R+L+ P PYR R EG+ M HWGQRKL ++E+E LT +A + D+ V+Y GAAPG H++ L+ FP V FVL DP PF IEASE V + TD +AR A L+ ISD+R + A++ + + DM Q +W E++ P +M+KF LP+ AG TEYLDG+ VWT P S+ETRL+V + G Sbjct: 203 RLLTDASPSSPYRRR--------------EGQ-----MKTVDHWGQRKLLISEIEFLTMHATQADVPVVVIYVGAAPGNHIQFLADELFPTVRFVLYDPRPFEIEASEMVSIQQERFTDEIARNLAPSCSDVRLLLISDVRSYEDVNGVAVVSMATQRETVAADMSVQRQWTEILRPAAAMLKFCLPYSAGHTEYLDGDLHLPVWTGPT----SSETRLIVVPSQSG 406
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|290984360|ref|XP_002674895.1| (predicted protein [Naegleria gruberi] >gi|284088488|gb|EFC42151.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 134.42 bits (337), Expect = 3.371e-33 Identity = 78/211 (36.97%), Postives = 111/211 (52.61%), Query Frame = 0 Query: 185 TFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALA------REYAGRENLIFISDIRRT-------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVE 380 TFP+ PY E R A HWGQRKL L+E+E LT Y+ +GD+V+YAGAAPG HL L+ FP + F+LVDP F + V ++ TD +A R NL+FISDIR +E I ED+ Q+ W E++ P+ SM+KFRLP+ G+ +Y G+++ + + +TE RLV++ Sbjct: 5 TFPKIPY-----------SDENKRNRNAL--------HWGQRKLLLSEIEFLTEYSHDGDVVIYAGAAPGSHLVYLAEVLFPNLKFMLVDPNKFNKDLYHVRNVTIMESYFTDEIAMEIKKIRNIESGNNLLFISDIRTADPLVMDPEQNEKCITEDLTLQKGWLEILLPRFSMLKFRLPFTEGKIKYFRGDIYLPVWGRKWTTECRLVIK 196
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|167524922|ref|XP_001746796.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774576|gb|EDQ88203.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 137.887 bits (346), Expect = 1.561e-32 Identity = 85/219 (38.81%), Postives = 121/219 (55.25%), Query Frame = 0 Query: 174 PDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPF--RIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDL---------ILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381 P E ILR P P PYR R++E HWGQRKL L E+E L + ++ LV+YAGAAPG H+++L FP +FV VDPAPF ++ ++R+ L + TD +ARE+A R +++F+SDIR A D+ ++ D Q RWH +M K S++KFRL W+ G T YL G+++ + +TE RL+VEG Sbjct: 14 PFETILR---PDAPAVPYRRRKNERKSV-------------------IHWGQRKLLLCEIEFLLLHGDKAPLVVYAGAAPGPHVKILMG-MFPKHSFVCVDPAPFSKQLVENDRLILRQEMFTDDVAREFADR-DVLFLSDIRS--ADPDIMDEKEVDSQVVADQEAQMRWHLLMKAKASLLKFRLSWKEGITNYLKGDIYLPIWGPMTTTEARLLVEG 206 The following BLAST results are available for this feature:
BLAST of EWM21625.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|