EWM21625.1, cds9061 (CDS) Nannochloropsis gaditana

Overview
NameEWM21625.1
Unique Namecds9061
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:312430..312927 +
Alignment locationKK037251.1:313131..313539 +
Alignment locationKK037251.1:313625..313962 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21625.1
ProductPoly A polymerase regulatory subunit
Orig transcript idgnl|cribi|Naga_100012g42.1957.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:312430..312927 +
KK037251.1supercontigKK037251.1:313131..313539 +
KK037251.1supercontigKK037251.1:313625..313962 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:00063707-methylguanosine mRNA capping
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004483mRNA (nucleoside-2'-O-)-methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR025804Pox/kineto_cap_MeTfrase
IPR000176mRNA_MeTrfase-like
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|585101880|gb|EWM21625.1| (Poly A polymerase regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 842.803 bits (2176), Expect = 0.000e+0
Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 0
Query:    1 MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG 414
            MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG
Sbjct:    1 MTSNTVGSKKNAALASASGATWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAGDYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGKDCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGGGQEGEEGGTTKEGDGGGGEGRSEGGDVG 414          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470309347|ref|XP_004364062.1| (hypothetical protein CAOG_03223 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 148.673 bits (374), Expect = 5.114e-37
Identity = 80/165 (48.48%), Postives = 101/165 (61.21%), Query Frame = 0
Query:  222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT-------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379
            HWGQRKL L+E+E LT +   G LV+YAGAAPG HLE LS   FP + F  VDPAPF  + ++ +KL+ GL TD +A  Y G+  L FISDIR            E  +  DM  Q RWH +M P  SM+KFRLPW  G TEYLDG+++   +    +TE RL+ 
Sbjct:  106 HWGQRKLLLSEIEFLTLHGVPGQLVVYAGAAPGTHLEYLSS-LFPELYFHAVDPAPFTAKETDHIKLIQGLFTDEMASSYCGQRAL-FISDIRSADWQRQSDQEVEASVKWDMDAQMRWHLLMQPVRSMLKFRLPWAPGTTEYLDGDLYLPVWGPITTTEARLIT 268          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|765551590|gb|KJE92211.1| (hypothetical protein CAOG_003223 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 150.214 bits (378), Expect = 7.893e-37
Identity = 81/165 (49.09%), Postives = 102/165 (61.82%), Query Frame = 0
Query:  222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT--YASEDLILE-----DMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379
            HWGQRKL L+E+E LT +   G LV+YAGAAPG HLE LS   FP + F  VDPAPF  + ++ +KL+ GL TD +A  Y G+  L FISDIR        D  +E     DM  Q RWH +M P  SM+KFRLPW  G TEYLDG+++   +    +TE RL+ 
Sbjct:  164 HWGQRKLLLSEIEFLTLHGVPGQLVVYAGAAPGTHLEYLSS-LFPELYFHAVDPAPFTAKETDHIKLIQGLFTDEMASSYCGQRAL-FISDIRSADWQRQSDQEVEASVKWDMDAQMRWHLLMQPVRSMLKFRLPWAPGTTEYLDGDLYLPVWGPITTTEARLIT 326          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|1129182376|gb|OLP89477.1| (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase [Symbiodinium microadriaticum])

HSP 1 Score: 150.214 bits (378), Expect = 1.322e-35
Identity = 79/179 (44.13%), Postives = 105/179 (58.66%), Query Frame = 0
Query:  222 HWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR------------IEASERVKLVAGLMTDALAREYAGRENLIFISDIRRT--------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVE 380
            HWGQRKL L E+E LT Y E G  V+YAGAAPG H+ LL++  FP + FVL+D  PF             I+ + R++      TD  A+E+   E ++FISD+R +        Y S+  + +DMR QERWH +M P  S  KFRLPW AG T+YL+G V    +  A +TE+RL VE
Sbjct:  188 HWGQRKLMLAEIEFLTEYYERGSCVVYAGAAPGTHIRLLAK-MFPKLRFVLIDCRPFSDHLNKAAKELLWIDGTPRIRCEQKYFTDETAKEFEHSEGVLFISDVRTSKDADEGDDYPSQKEVEDDMRVQERWHLLMKPVASCFKFRLPWDAGTTKYLNGTVHLPVWGPATTTESRLFVE 365          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|923126593|ref|XP_013756763.1| (hypothetical protein AMSG_06709 [Thecamonas trahens ATCC 50062] >gi|906557564|gb|KNC50807.1| hypothetical protein AMSG_06709 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 146.362 bits (368), Expect = 1.830e-35
Identity = 85/213 (39.91%), Postives = 118/213 (55.40%), Query Frame = 0
Query:  176 EDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALAREYAGRENLIFISDIR----RTYASEDL---ILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVV 379
            E + R+L+P  PR  YR R                     S     HWGQRKL ++E+E LT YA  GD+V+YAGAAPG H   L+ +F P ++F L DPA F   +    R+ +     TD +   YAGR+N++F+SDIR    +    E++   + ED   Q+ WH+ + P+ SM+KFRLPW AG T+YLDG +    +    +TETRLVV
Sbjct:   71 ESLDRILAPDAPREAYRRRNK-------------------SYKTVNHWGQRKLLMSEVEFLTLYARPGDVVVYAGAAPGAHTAWLADQF-PALSFELYDPADFVPGLGDHPRIGVHQEFFTDEICATYAGRDNVLFVSDIRTADWKVMGEEEVEKSVYEDQLRQQGWHDAIRPRYSMLKFRLPWGAGSTQYLDGAIHLPVWGPITTTETRLVV 263          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|514701969|ref|XP_004998552.1| (hypothetical protein PTSG_01078 [Salpingoeca rosetta] >gi|326430807|gb|EGD76377.1| hypothetical protein PTSG_01078 [Salpingoeca rosetta])

HSP 1 Score: 145.206 bits (365), Expect = 2.918e-34
Identity = 88/222 (39.64%), Postives = 120/222 (54.05%), Query Frame = 0
Query:  171 VHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILE---------DMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381
            V + D   +R L+   PR PYR R+ E                        HWGQRKL L+E+E L R+      V+YAGAAPG H+  L+R  FP   FV VDP+PF   ++A +++ L     TD LA E+ G EN++FISDIR      DL+ +         D   Q RWH++M P  SM+KFRL W+ G+TEYLDG+++   +    +TE RL+V G
Sbjct:  163 VSHTDLPFVRTLTDESPRMPYRRRRHE-------------------TKTVIHWGQRKLLLSEVEFLVRFGHLSKKVVYAGAAPGTHIVQLAR-MFPDHRFVCVDPSPFNDSLKACKQLLLRQEPFTDDLAHEFEG-ENVLFISDIRSV--DPDLVTDKETDKAVGGDQAAQMRWHDIMRPVASMLKFRLSWKPGKTEYLDGDIYLPVWGPITTTEARLMVTG 361          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470324885|ref|XP_004364306.1| (hypothetical protein CAOG_01438 [Capsaspora owczarzaki ATCC 30864] >gi|765549442|gb|KJE90063.1| hypothetical protein CAOG_001438 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 142.51 bits (358), Expect = 1.229e-33
Identity = 84/206 (40.78%), Postives = 116/206 (56.31%), Query Frame = 0
Query:  180 RVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLI----LEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381
            R L P  PR  YR R+ E                        HWG+RK+ ++E+E L+ Y     LV+YAGAAPG H++ L+  FFP + FV VDPAPF+I+ +E++       ++ LA+E+ G+  ++FISDIR   + +D I      DM  Q RWHE+M P  SM+KFRLPW  G+T YLDGEV+   +    +TE RLV   
Sbjct:  183 RTLRPDAPRMAYRRRKHETKSVI-------------------HWGERKMLMSEIEFLSLYGTPDRLVVYAGAAPGGHMQYLAS-FFPHLKFVGVDPAPFKIKQTEQISFRQQYFSNELAQEFLGK-GVLFISDIR---SPDDEIEAQAQADMAAQMRWHEIMQPHRSMLKFRLPWNEGQTMYLDGEVYLPVWGPITTTEARLVTHA 364          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|470322444|ref|XP_004349242.1| (hypothetical protein CAOG_02492 [Capsaspora owczarzaki ATCC 30864] >gi|765550727|gb|KJE91348.1| hypothetical protein CAOG_002492 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 140.969 bits (354), Expect = 2.298e-33
Identity = 89/227 (39.21%), Postives = 121/227 (53.30%), Query Frame = 0
Query:  180 RVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDL---VLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYA---GRENLIFISDIRR----------TYASE-DLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGE----VWTQPYAKARSTETRLVVEGPRKG 385
            R+L+   P  PYR R              EG+     M    HWGQRKL ++E+E LT +A + D+   V+Y GAAPG H++ L+   FP V FVL DP PF IEASE V +     TD +AR  A       L+ ISD+R           + A++ + +  DM  Q +W E++ P  +M+KF LP+ AG TEYLDG+    VWT P     S+ETRL+V   + G
Sbjct:  203 RLLTDASPSSPYRRR--------------EGQ-----MKTVDHWGQRKLLISEIEFLTMHATQADVPVVVIYVGAAPGNHIQFLADELFPTVRFVLYDPRPFEIEASEMVSIQQERFTDEIARNLAPSCSDVRLLLISDVRSYEDVNGVAVVSMATQRETVAADMSVQRQWTEILRPAAAMLKFCLPYSAGHTEYLDGDLHLPVWTGPT----SSETRLIVVPSQSG 406          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|290984360|ref|XP_002674895.1| (predicted protein [Naegleria gruberi] >gi|284088488|gb|EFC42151.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-33
Identity = 78/211 (36.97%), Postives = 111/211 (52.61%), Query Frame = 0
Query:  185 TFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFR--IEASERVKLVAGLMTDALA------REYAGRENLIFISDIRRT-------YASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVE 380
            TFP+ PY             E  R   A         HWGQRKL L+E+E LT Y+ +GD+V+YAGAAPG HL  L+   FP + F+LVDP  F   +     V ++    TD +A      R      NL+FISDIR           +E  I ED+  Q+ W E++ P+ SM+KFRLP+  G+ +Y  G+++   + +  +TE RLV++
Sbjct:    5 TFPKIPY-----------SDENKRNRNAL--------HWGQRKLLLSEIEFLTEYSHDGDVVIYAGAAPGSHLVYLAEVLFPNLKFMLVDPNKFNKDLYHVRNVTIMESYFTDEIAMEIKKIRNIESGNNLLFISDIRTADPLVMDPEQNEKCITEDLTLQKGWLEILLPRFSMLKFRLPFTEGKIKYFRGDIYLPVWGRKWTTECRLVIK 196          
BLAST of EWM21625.1 vs. NCBI_GenBank
Match: gi|167524922|ref|XP_001746796.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774576|gb|EDQ88203.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 137.887 bits (346), Expect = 1.561e-32
Identity = 85/219 (38.81%), Postives = 121/219 (55.25%), Query Frame = 0
Query:  174 PDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPF--RIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDL---------ILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEG 381
            P E ILR   P  P  PYR R++E                        HWGQRKL L E+E L  + ++  LV+YAGAAPG H+++L    FP  +FV VDPAPF  ++  ++R+ L   + TD +ARE+A R +++F+SDIR   A  D+         ++ D   Q RWH +M  K S++KFRL W+ G T YL G+++   +    +TE RL+VEG
Sbjct:   14 PFETILR---PDAPAVPYRRRKNERKSV-------------------IHWGQRKLLLCEIEFLLLHGDKAPLVVYAGAAPGPHVKILMG-MFPKHSFVCVDPAPFSKQLVENDRLILRQEMFTDDVAREFADR-DVLFLSDIRS--ADPDIMDEKEVDSQVVADQEAQMRWHLLMKAKASLLKFRLSWKEGITNYLKGDIYLPIWGPMTTTEARLLVEG 206          
The following BLAST results are available for this feature:
BLAST of EWM21625.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101880|gb|EWM21625.1|0.000e+0100.00Poly A polymerase regulatory subunit [Nannochlorop... [more]
gi|470309347|ref|XP_004364062.1|5.114e-3748.48hypothetical protein CAOG_03223 [Capsaspora owczar... [more]
gi|765551590|gb|KJE92211.1|7.893e-3749.09hypothetical protein CAOG_003223 [Capsaspora owcza... [more]
gi|1129182376|gb|OLP89477.1|1.322e-3544.13Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
gi|923126593|ref|XP_013756763.1|1.830e-3539.91hypothetical protein AMSG_06709 [Thecamonas trahen... [more]
gi|514701969|ref|XP_004998552.1|2.918e-3439.64hypothetical protein PTSG_01078 [Salpingoeca roset... [more]
gi|470324885|ref|XP_004364306.1|1.229e-3340.78hypothetical protein CAOG_01438 [Capsaspora owczar... [more]
gi|470322444|ref|XP_004349242.1|2.298e-3339.21hypothetical protein CAOG_02492 [Capsaspora owczar... [more]
gi|290984360|ref|XP_002674895.1|3.371e-3336.97predicted protein [Naegleria gruberi] >gi|28408848... [more]
gi|167524922|ref|XP_001746796.1|1.561e-3238.81hypothetical protein [Monosiga brevicollis MX1] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9091rna9091Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications