rna9082, rna9082 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9082
Unique Name	rna9082
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1651
Alignment location	KK037251.1:291070..293109 +

Link to JBrowse

Properties


Property Name	Value
Product	WD40-repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100012g34.1917.mrna
Orig protein id	gnl\|cribi\|Naga_100012g34.1917
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:291070..293109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g34	gene8808	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9082	rna9082-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21585.1	cds9052	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:291070..293109+
coding sequence from alignment at KK037251.1:291070..293109+

mRNA sequence

>rna9082 ID=rna9082|Name=rna9082|organism=Nannochloropsis gaditana|type=mRNA|length=1651bp
GAGGGAGGAGGGAGTCATCAGCTTTGTTCGATGAAACGGGGCGTGCTTCG
CTCACTACAGGAATATACGTGCTCTTAGTATTATTATGTGGAGGAGTGTG
CATCGGTGATAATGTATTCCACGAAAGTGTCAAAGGCAGAGTCTAAGTTG
CGTCATGGAATGGGGAAGGCTCTATCGCTCCTCGTAGCAATACCGGTGCC
GTCACTGACCGCACTTCTAAAAAACTCGATTTATTTACTCATAACACTGC
TTGCACGTTTTGAAGGCTTTTCTAGGAAAGTAGATATTGTCTTCGGGCCT
CTTTTGATGCCCGGTGGGGTTGAAGGGGCGGTCAGGGCCCCCCCAACGGC
TTGCAGCACTTCCTCATCCTGCCTGCCGCGTCCGCCTTGCAATCTGCTGT
TTCTCCTTATCCTGTCGCTCTTCATCCTCTTCTTTTGTCCTTCCATTGAA
GCCCGTGTCTGGGCTCGCGTTGTGCATCCTCCCAAGACTTTACAAGCTGT
CCCTGAAGTTCATGAGGCCGGTTGGCTGCGTCTCCACAGCAACGACCTTC
CAAATGTCACCCCTGCTCTAACCCCGTACTGGGAAAATGTCACAATTCGT
CCAATTCTGTCCGCAATTCAACGATCGGCCAACCCCTGGTACACCATCCG
CAGCCTCGACCCCGGGACTATGGGGTGGCACCGTGTCTACAGGCGCCGAC
AGCGCGTCCCCAGGCGCGACCTTAACCCCCCCCCCTCCGCGACACCGCCC
TCCACGTCGTATGTATCCGAAGAAGAGGAGTTCGGGGGGCCTGAGGGTGG
AGACGAGGGCATGTTCGAGTACGTGGACGATGAGTCCTTGTCCTACCTGC
AGCCAGTGTGGGAGGAGAGGAAGCGGGGGGCGGTAGCCTCGCTTGGTGGG
CGACGGGGCGCAGAGGCAAACCCGTCTCTCCTTATTGGGCCGTTCATGGT
GCTGCTTATCACCTCCTCCCCCTTCGATCCTTTCTCCAACCATCTAGAAG
CCCGCGTCACGCAGGTGGCTCCTGCTTTTCCTCATGTCCTTTTCCTGAAG
GGGGAGGGGAAGGACTTCTCGGGGCTGGTGGCACAGATAAGCGTGAAAGG
GCTTCCTCAAGTGTTGCTTTTTGAAGAGAACCTTCTTCGAGGCCGTTTTC
GAGGCGTGAAGACTGTGCGAAATTTGCTCTCTTTCCTAGTGCTCCACACG
GGGTGCCTTCCGCGGGCTGTCGTGACAGGGAACGGTGAACCTGAGGACAA
GCTCATGGTAAGGCTTCCAATGGTTGACGAACCAGGTCTAGGGTGGATTT
ACGCGCTGAGTGTGATTTGGGTGTTGGGTGAGTGGATTTTAAAGCTTGCG
AAGATGGGCAGAAAGGAGAGGCGGGCCACTAATAGCGATGAAGAAGATGA
GAAGCAGGAGTGACACAAGCAAGCTGGAAAACAAAATTTGAATGGATGGT
GTAGATTTCAAAGTGTATAGAAGGTCAATTCGGGGCGGTTATATAAAATT
GGATAGTGTTCAAAGAAATATTAAAAAAGATGTGGAAAAGGAAAGGATGT
ATCGCAGGGAAGCCATAAGTTGTCCATGGTTCCGGGTCAGGCGGACAAGA
AAGCAGGGGTCCTATATACTTTGATGGATGAAGGGAGCTATGCAAAGCAC
A

protein sequence of rna9082

>rna9082-protein ID=rna9082-protein|Name=rna9082|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MRVMVMKGHERNITRVLFNRDGDLLFSAASDKTPTVWDTETGERLGTYNG
HSGSITDMSVSWNSNRLVTASGDCQVKLWKVQTGEELLTYTHSGPVRGAQ
WAEGGERFATVCDPFVSHNAKIQVFYAPEDADPESLSPTPEVLIEIRNRE
EKPTKVYWTQFNEDLLVAYENGWVRKYDPKTGEERTGEGSSAKLHEEKIN
AITWDKQKICFITASNDYRSCLVDAKTLKVLRVYQTDRPVNGAVISPIKD
HVLLGGGQEAQSVTTTRGQAGKFETRFFHSIYEEEFGRVKGHFGPITAVD
ISPDGLAFVSGSFDGYVRLHFFDDDYLFMRDEVPEEY

mRNA from alignment at KK037251.1:291070..293109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9082 ID=rna9082|Name=rna9082|organism=Nannochloropsis gaditana|type=mRNA|length=2040bp|location=Sequence derived from alignment at KK037251.1:291070..293109+ (Nannochloropsis gaditana)
TAGACGGCTGGCGACCTCCTTCTGTGTGGTGCTCCACCACCCCTAGCGTG
TAGTAATAGTCCATCGAGTACATCGGCCCCCTGACATTTTTGCTCCTGTC
ATACACAGATCCAATCGTCGCACACATTCTAGAGTGGGCAGTCGGCGTGG
ACAAGCGAAGTATTGCAAGAAACGTGCCCTCTTTCGGACAGCAACCATGg
tacgtcttcctcgccccccgcgtGCGTTTTCGGCGTTTATGTAATCattt
gcccccctccccttacTTTGGCATTGAAAGAGGGTCATGGTCATGAAGGG
TCACGAGCGGAATATCACCCGTGTGCTCTTCAATCGCGATGGAGATCTGC
TTTTCTCCGCAGCCAGTGACAAAACCCCCACGGTCTGGGATACTGAGACT
GGGGAACGTTTAGGTAAGTATGTCGGCTTAAAAGGGTTCGCTCTCCGCGC
CCTCCCGTTCTCTGAGTGACGCTTTGTGCATGGCTTGAGCTGCTCTCCTT
ACTCTCACGCAGCCAACTGGGGACTGGGAAATCAATAAGCCTTTCACGCC
CCCCTAGgcgctcttcccctcccttgcatGCCCCTCATGTCTctgccgtc
ctctccccagGTACCTACAATGGTCACTCGGGCTCTATCACAGATATGAG
CGTTTCGTGGAACAGCAATCGATTAGTGACGGCCTCGGGTGATTGCCAGG
TCAAGCTATGGAAGGTGCAGACGGGCGAGGAGCTGCTCACATACACGCAT
TCAGGACCCGTCCGAGGTGCTCAAtgggccgagggcggggagcgtTTTGC
CACTGTGTGCGATCCCTTCGTTTCGCACAACGCCAAGATACAAGTCTTCT
ACGCCCCCGAGGACGCGGACCCCGAGAGCTTGAGCCCGACGCCGGAGGTT
TTGATCGAGATCCGGAaccgggaggagaagccgaCCAAGGTAGGGAGAAG
GGCATGATATTGAGgttgaggggggaggcggacatAAGGGGTGCCTGGTC
TCGTATTGGGTGCTTTGTTCGATGCCATTCTTGTGCGCGCCAGCACGGTT
GACGCGAGGGGGACCTTTTTTCTCTGACAGGTGTACTGGACACAGTTCAA
CGAGGATCTGCTGGTGGCGTACGAGAACGGGTGGGTGCGAAAGTACGATC
CcaagacgggggaggaacggactggggaggggtcgagtGCGAAGCTGCAT
GAGGAGAAGATCAACGCGATCACCTGGGACAAGCAAAAGATCTGCTTCAT
CACCGCCTCCAACGACTACCGATCCTGTTTAGTGGACGCCAAGACCTTGA
AAGTCCTCCGGGTCTACCAGACCGACCGCCCTGTCAACGGGGCCGTCATC
TCACCGATCAAGGACCACGTGctcctggggggggggcaagaagcGCAGAG
TGTAACGACCACGAGGGGTCAGGCGGGCAAATTCGAGACGCGCTTTTTTC
ACTCCATTTACGAGGAAGAGTTTGGGCGCGTGAAAGGACACTTTGGCCCG
ATTACGGCCGTGGACATAAGTCCGGACGGGCTAGCTTTCGTAAGCGGCTC
TTTCGACGGCTACGTTCGCTTGCATTTTTTTGACGACGATTACCTGTTTA
TGCGAGACGAGGTTCCGGAAGAGTATTAGGAACGGaaagtgaagggaggg
actggcagagaggggagtaacgaggtagaggggaaggaaggaagggagga
agggaggaagggaggaagggacatgtACAAAAGACGAGCGTTCCtttggc
ggggaggagagatggaCGAGGGGCAGCGGGGCCCTCACTAGTGAGGGCGG
TCATAAAGCGAAGAAGGCAAGGTGAAGGCCACGTCCGTGAGGAATTTTTG
GATATCTCTGAGTTTTCGTTGTTCTATTGAGCAGAGCGTGGTGCCTTTAT
AAAATCTCACTGTACTGCACCCTTGATCACTCAGAGAGTTGTGTGAGATT
ACGAATGAGCTTATTTCTTCTTATGCTTATACACGAGAATCGTAAGTCTC
TTCACATACTACCAGCCAAATCCCTACTTTGCATCCACTC

Coding sequence (CDS) from alignment at KK037251.1:291070..293109+

>rna9082 ID=rna9082|Name=rna9082|organism=Nannochloropsis gaditana|type=CDS|length=4056bp|location=Sequence derived from alignment at KK037251.1:291070..293109+ (Nannochloropsis gaditana)
ATGAGGGTCATGGTCATGAAGGGTCACGAGCGGAATATCACCCGTGTGCT
CTTCAATCGCGATGGAGATCTGCTTTTCTCCGCAGCCAGTGACAAAACCC
CCACGGTCTGGGATACTGAGACTGGGGAACGTTTAGGTACCTACAATGGT
CACTCGGGCTCTATCACAGATATGAGCGTTTCGTGGAACAGCAATCGATT
AGTGACGGCCTCGGGTGATTGCCAGGTCAAGCTATGGAAGGTGCAGACGG
GCGAGGAGCTGCTCACATACACGCATTCAGGACCCGTCCGAGGTGCTCAA
tgggccgagggcggggagcgtTTTGCCACTGTGTGCGATCCCTTCGTTTC
GCACAACGCCAAGATACAAGTCTTCTACGCCCCCGAGGACGCGGACCCCG
AGAGCTTGAGCCCGACGCCGGAGGTTTTGATCGAGATCCGGAaccgggag
gagaagccgaCCAAGGTGTACTGGACACAGTTCAACGAGGATCTGCTGGT
GGCGTACGAGAACGGGTGGGTGCGAAAGTACGATCCcaagacgggggagg
aacggactggggaggggtcgagtGCGAAGCTGCATGAGGAGAAGATCAAC
GCGATCACCTGGGACAAGCAAAAGATCTGCTTCATCACCGCCTCCAACGA
CTACCGATCCTGTTTAGTGGACGCCAAGACCTTGAAAGTCCTCCGGGTCT
ACCAGACCGACCGCCCTGTCAACGGGGCCGTCATCTCACCGATCAAGGAC
CACGTGctcctggggggggggcaagaagcGCAGAGTGTAACGACCACGAG
GGGTCAGGCGGGCAAATTCGAGACGCGCTTTTTTCACTCCATTTACGAGG
AAGAGTTTGGGCGCGTGAAAGGACACTTTGGCCCGATTACGGCCGTGGAC
ATAAGTCCGGACGGGCTAGCTTTCGTAAGCGGCTCTTTCGACGGCTACGT
TCGCTTGCATTTTTTTGACGACGATTACCTGTTTATGCGAGACGAGGTTC
CGGAAGAGTATTAGATGAGGGTCATGGTCATGAAGGGTCACGAGCGGAAT
ATCACCCGTGTGCTCTTCAATCGCGATGGAGATCTGCTTTTCTCCGCAGC
CAGTGACAAAACCCCCACGGTCTGGGATACTGAGACTGGGGAACGTTTAG
GTACCTACAATGGTCACTCGGGCTCTATCACAGATATGAGCGTTTCGTGG
AACAGCAATCGATTAGTGACGGCCTCGGGTGATTGCCAGGTCAAGCTATG
GAAGGTGCAGACGGGCGAGGAGCTGCTCACATACACGCATTCAGGACCCG
TCCGAGGTGCTCAAtgggccgagggcggggagcgtTTTGCCACTGTGTGC
GATCCCTTCGTTTCGCACAACGCCAAGATACAAGTCTTCTACGCCCCCGA
GGACGCGGACCCCGAGAGCTTGAGCCCGACGCCGGAGGTTTTGATCGAGA
TCCGGAaccgggaggagaagccgaCCAAGGTGTACTGGACACAGTTCAAC
GAGGATCTGCTGGTGGCGTACGAGAACGGGTGGGTGCGAAAGTACGATCC
caagacgggggaggaacggactggggaggggtcgagtGCGAAGCTGCATG
AGGAGAAGATCAACGCGATCACCTGGGACAAGCAAAAGATCTGCTTCATC
ACCGCCTCCAACGACTACCGATCCTGTTTAGTGGACGCCAAGACCTTGAA
AGTCCTCCGGGTCTACCAGACCGACCGCCCTGTCAACGGGGCCGTCATCT
CACCGATCAAGGACCACGTGctcctggggggggggcaagaagcGCAGAGT
GTAACGACCACGAGGGGTCAGGCGGGCAAATTCGAGACGCGCTTTTTTCA
CTCCATTTACGAGGAAGAGTTTGGGCGCGTGAAAGGACACTTTGGCCCGA
TTACGGCCGTGGACATAAGTCCGGACGGGCTAGCTTTCGTAAGCGGCTCT
TTCGACGGCTACGTTCGCTTGCATTTTTTTGACGACGATTACCTGTTTAT
GCGAGACGAGGTTCCGGAAGAGTATTAGATGAGGGTCATGGTCATGAAGG
GTCACGAGCGGAATATCACCCGTGTGCTCTTCAATCGCGATGGAGATCTG
CTTTTCTCCGCAGCCAGTGACAAAACCCCCACGGTCTGGGATACTGAGAC
TGGGGAACGTTTAGGTACCTACAATGGTCACTCGGGCTCTATCACAGATA
TGAGCGTTTCGTGGAACAGCAATCGATTAGTGACGGCCTCGGGTGATTGC
CAGGTCAAGCTATGGAAGGTGCAGACGGGCGAGGAGCTGCTCACATACAC
GCATTCAGGACCCGTCCGAGGTGCTCAAtgggccgagggcggggagcgtT
TTGCCACTGTGTGCGATCCCTTCGTTTCGCACAACGCCAAGATACAAGTC
TTCTACGCCCCCGAGGACGCGGACCCCGAGAGCTTGAGCCCGACGCCGGA
GGTTTTGATCGAGATCCGGAaccgggaggagaagccgaCCAAGGTGTACT
GGACACAGTTCAACGAGGATCTGCTGGTGGCGTACGAGAACGGGTGGGTG
CGAAAGTACGATCCcaagacgggggaggaacggactggggaggggtcgag
tGCGAAGCTGCATGAGGAGAAGATCAACGCGATCACCTGGGACAAGCAAA
AGATCTGCTTCATCACCGCCTCCAACGACTACCGATCCTGTTTAGTGGAC
GCCAAGACCTTGAAAGTCCTCCGGGTCTACCAGACCGACCGCCCTGTCAA
CGGGGCCGTCATCTCACCGATCAAGGACCACGTGctcctggggggggggc
aagaagcGCAGAGTGTAACGACCACGAGGGGTCAGGCGGGCAAATTCGAG
ACGCGCTTTTTTCACTCCATTTACGAGGAAGAGTTTGGGCGCGTGAAAGG
ACACTTTGGCCCGATTACGGCCGTGGACATAAGTCCGGACGGGCTAGCTT
TCGTAAGCGGCTCTTTCGACGGCTACGTTCGCTTGCATTTTTTTGACGAC
GATTACCTGTTTATGCGAGACGAGGTTCCGGAAGAGTATTAGATGAGGGT
CATGGTCATGAAGGGTCACGAGCGGAATATCACCCGTGTGCTCTTCAATC
GCGATGGAGATCTGCTTTTCTCCGCAGCCAGTGACAAAACCCCCACGGTC
TGGGATACTGAGACTGGGGAACGTTTAGGTACCTACAATGGTCACTCGGG
CTCTATCACAGATATGAGCGTTTCGTGGAACAGCAATCGATTAGTGACGG
CCTCGGGTGATTGCCAGGTCAAGCTATGGAAGGTGCAGACGGGCGAGGAG
CTGCTCACATACACGCATTCAGGACCCGTCCGAGGTGCTCAAtgggccga
gggcggggagcgtTTTGCCACTGTGTGCGATCCCTTCGTTTCGCACAACG
CCAAGATACAAGTCTTCTACGCCCCCGAGGACGCGGACCCCGAGAGCTTG
AGCCCGACGCCGGAGGTTTTGATCGAGATCCGGAaccgggaggagaagcc
gaCCAAGGTGTACTGGACACAGTTCAACGAGGATCTGCTGGTGGCGTACG
AGAACGGGTGGGTGCGAAAGTACGATCCcaagacgggggaggaacggact
ggggaggggtcgagtGCGAAGCTGCATGAGGAGAAGATCAACGCGATCAC
CTGGGACAAGCAAAAGATCTGCTTCATCACCGCCTCCAACGACTACCGAT
CCTGTTTAGTGGACGCCAAGACCTTGAAAGTCCTCCGGGTCTACCAGACC
GACCGCCCTGTCAACGGGGCCGTCATCTCACCGATCAAGGACCACGTGct
cctggggggggggcaagaagcGCAGAGTGTAACGACCACGAGGGGTCAGG
CGGGCAAATTCGAGACGCGCTTTTTTCACTCCATTTACGAGGAAGAGTTT
GGGCGCGTGAAAGGACACTTTGGCCCGATTACGGCCGTGGACATAAGTCC
GGACGGGCTAGCTTTCGTAAGCGGCTCTTTCGACGGCTACGTTCGCTTGC
ATTTTTTTGACGACGATTACCTGTTTATGCGAGACGAGGTTCCGGAAGAG
TATTAG

Synonyms

Publications