rna9078, rna9078 (mRNA) Nannochloropsis gaditana

Overview
Namerna9078
Unique Namerna9078
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1899
Alignment locationKK037251.1:283799..285312 -

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Properties
Property NameValue
Producttranscription elongation factor
Orig transcript idgnl|cribi|Naga_100012g30.1953.mrna
Orig protein idgnl|cribi|Naga_100012g30.1953
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:283799..285312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g30gene8804Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21621.1cds9048Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9078rna9078-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9078 ID=rna9078|Name=rna9078|organism=Nannochloropsis gaditana|type=mRNA|length=1899bp
ATGCACAATAGATGGAGGAATCACGAATCGATAAAACTGAGAATGCGGAT
GAAAAGAAGTTTGTTGGGAACACCGCTCCCATGCACTGCATGTAAGATGA
GCTCAAAACGAATAAACTACCTGTCGTTGACTTCGCTTTGGGGCTTAAAA
GAGCTTATTGAAGACCGCACCCTAAAGTCACTCGGCAAACTGGCGTCGGC
TGTCCTCCCCCCTGGCTCTGCACAATCCCCACAACACGGTCCTGATTCGA
AACCTACATGGGATATCTCTGGATTGGATTTCAAAGCTGCGAAGGAGGAG
TTTTTGTCGGTACAGCCCGAGCCCTCCATCTATGGCTACGACGGCCTTCT
GGACAGGATTCGCGCGACAGATACCCCGAACATGGTGAATAATGTATATC
TTGACTGGACTGGTTCTGCTATCTATCGTGCTAGTATGGTGAATGCTATG
GCTGAAGATCTAAAACAAAATCTCTATGGGAACACGCATAGCATTAATCC
CAGCTCCATGCTTACAGAGCAGAAGGTTGATGCCGTTCGAGAACGTGTGG
TTCGTTACTTCAACACCACTCTATCCGAGTACTCCGTTATATTTACGTCA
GGTGCCACAGCCGCATTGCATTTATTAAGTGAGACATTTCCCTGGTCAAA
CAGCAGCCGCTTTACCTACTTGGAACAAAGTCACAACAGCGTATTGGGGA
TTCGGGAGTTATGCTTGCACCATGGCGGAGACTTTTGTGCCCTGCGCGAA
TCGGAAGTGAACGTGGAGCACCCTGAGTCGTCGCAATGCAACGCTTGCGG
GCATACGGATAAAAGTACGCCCACGTATATGGCGGCGGCAGCTGCGGCCG
CGGCCACCCAAACAACTACGGAAGGCCAGCAGGACCAGCCTCTGCCCTAC
CACTTGTTCGCTTTCCCGGCCCAAGATAACTTTGCGGGGATTAAATACAA
TTTAAGCTGGATCGATCACATTCAGAAGGCGAGAGATATGTGCGGGAAGC
GCGGGGATTGGCGGGTCTTGCTTGACGCGGCGGCTTTCGTTCCTTCGAGT
CGATTGGATTTGGGTAAGTATACGCCCGACTTTGTGACCCTCTCCTTCTA
TAAGATGTTCGGATTTCCCACGGGACTGGGCTGTCTGCTGGTGCATAAAC
GCTCGATCGACATTCTTCGGAAGTTGTATTGGGGGGGAGGCTCCGTGGTC
GTGGCCATGACGCAGGAGCCCATTACCGTGTTCAAAGGCAATCCCTGCGC
CAAATATGAAGACGGAACTTTGAACTTCCTTTCCATTCTGGGTCTAAATC
CCGGCTTTGATTCTTTGGAAGAGATCGGTATCGACCGGATCACCCACCAC
GTCTGGGCTCTGACCCTCTGGACTTACGAGCAACTCCGGGTATTAAGGCA
TCGGAACGGGCAACCCGTGGTGCGGGTTTACGGGAAGCACGACTTAGGGG
ACCCAAGGGTGCAGGGGGGCGTGATCAGCTTCAATGTACTGACGCCGGAG
GGCACCTATATCGGCTACCACCACGTGCAAAAGCTGGCAGCCCGGTACCG
GTTTCACGTTCGCTCGGGGTGCCAGTGTAATCCGGGGGCGTGCTTTGACT
ACCTAGGCATAAGCTACGAGCAAGTCAGCATGTTCTTCCTGAACAAGGAT
TCTTGCGGGGACGAAAAGGACGTGGTAAACGGAGGGACCCTGCCTTTGGG
GGCCATCCGCATCTCCTTCGGCTCCTTGACCACCTTCGAGGACGTTCAGG
CCTGGGTCGCGTTCTTGGAGGCCTTCTTCGTGGACTCGGGCGAGATGGCA
GCCTTGGGGTTGGAGGAAGGGAGGAAGCGACAGGGGCTACAAAATCCCTG
GGCGGCGAAGCCTTTCTTCGTCGAGCATACGGGGGCGGCTGTGGCGTAG
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protein sequence of rna9078

>rna9078-protein ID=rna9078-protein|Name=rna9078|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTV
DILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTR
GGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNA
PPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIA
NLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARS
LKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAY
EANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDE
PMTMFVRCLTCGNRWKE
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mRNA from alignment at KK037251.1:283799..285312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9078 ID=rna9078|Name=rna9078|organism=Nannochloropsis gaditana|type=mRNA|length=1514bp|location=Sequence derived from alignment at KK037251.1:283799..285312- (Nannochloropsis gaditana)
GTGTCGTGTGGAAGTGGAATTGGCCTCGGAACCCGATGGTAGATGACAGT
AGGATCATGGGAGAGAGAACAACGGATCGTCGCCCAGAGCCTCTCCGTTG
CAGAAGCTGGGGAGGATTTATCCCTCTGGCCGACTTTTACGCTTTGTCAC
CCGTTATGCCAGTATGCCCTCTTACTGTCTCGATCTCACTGTGCCAACGT
GGAACTTGCTCGAGTTGCAGCCGATTTTAGCCGCATTGTCTTTTTTAGCC
AAGTTTTAGGCTGCTGAATGTCGTCACGGTCACCATCATTGCGTGTATCG
TCCCCACAAACAGCGCATCAAATTGTCCGCCGCGATGGCCCAATCCCACC
AATCTTCGAATAAATTGACGGAATTGGTCACAGATTTAGCCGTGAAATTG
GAGAAAGCCTGTGAGCCTGCACGGCTGGACGCAGCGTTGGCAGGAGACGT
GCTAGGAGAACTGGAAACCATTGATATGACGGTGGACATCTTGAAAAAAA
GCAAGGCAGGATTTGCTGTCAAGAAATGCAAGGCTGTCAAGGCCGATGGA
GCCTTTGCATCCGTGTGTGAACGTGCATCGCTTCTGTTCAAGAAATGGAA
AAGGGCTGTGGCTACCCCGTCCGACCCTACCCGCGGGGGGGAGAAGGCAA
CGAACGGGCGCCCGTCGGAGTCCCTGTCCACAGCATCCGTCAACAGCGGC
CCTGCCACAAGCATCAGTCCATTAACGTGCGGTGGCTCTCAGGGTAAGGC
AAGAAACGGAGAGCCCGTCGTGGAGGGGAACGCCCCACCGCCCTCCTCCG
GCCCCTCCACCTCCAGGCCTCCTCCCCTTCCGACTCAATCAGCCGCGGAC
CCCCCGAGCGTCTTATCCCACCTTGCCAGTGCTGAAGCGGCTATATTGGA
AGATTCGCTGCCGCCCTCACGCCTGAAAATTGCAAATTTATTCCTGGCGC
TCTTTCTCAAATACCCGGAGGGCCAGGAGGATCCGGGAAGGGCAGCGCGC
GTGGCGGTGGACATAGAGCAGGCCATGCAGAACGTGATGGACCACAAGCT
TGCCGCAAAGCAGTACGGAGACAAGGCTCGGTCTCTCAAGTACAACCTGG
GCATGAACGAGCATCTGCGGATGCGTGTTATCCTAAGCGACGTGGCGCCT
GCCGTGCTTGTCGCAATGAAGGCGGACGAAATGCAGCCCGAGGAGCATCG
CCAGGCCGCAGAGGCCGCCGCAGCCTTGGCCTACGAGGCAAATCTGCTGG
ATTGGCACGACAAGAATGCGGACAAGATTCGTAAACAGCTGGGAATTGAG
GACGTGGGGGGCTCTTTCACATGCGGGCGCTGCAAGGGGAACAAGACAAG
CTATCAAGCCAAGCAGACCCGATCTTCGGATGAGCCCATGACCATGTTCG
TCCGGTGCTTGACGTGTGGCAACCGGTGGAAAGAATAAAGAGGGGGGCGC
GGGGGCAAATTGAACAAATTTTACGACTGTGAATCCTCGCGCCGGCACCC
GCGTTACAGTGTGC
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Coding sequence (CDS) from alignment at KK037251.1:283799..285312-

>rna9078 ID=rna9078|Name=rna9078|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at KK037251.1:283799..285312- (Nannochloropsis gaditana)
ATGGCCCAATCCCACCAATCTTCGAATAAATTGACGGAATTGGTCACAGA
TTTAGCCGTGAAATTGGAGAAAGCCTGTGAGCCTGCACGGCTGGACGCAG
CGTTGGCAGGAGACGTGCTAGGAGAACTGGAAACCATTGATATGACGGTG
GACATCTTGAAAAAAAGCAAGGCAGGATTTGCTGTCAAGAAATGCAAGGC
TGTCAAGGCCGATGGAGCCTTTGCATCCGTGTGTGAACGTGCATCGCTTC
TGTTCAAGAAATGGAAAAGGGCTGTGGCTACCCCGTCCGACCCTACCCGC
GGGGGGGAGAAGGCAACGAACGGGCGCCCGTCGGAGTCCCTGTCCACAGC
ATCCGTCAACAGCGGCCCTGCCACAAGCATCAGTCCATTAACGTGCGGTG
GCTCTCAGGGTAAGGCAAGAAACGGAGAGCCCGTCGTGGAGGGGAACGCC
CCACCGCCCTCCTCCGGCCCCTCCACCTCCAGGCCTCCTCCCCTTCCGAC
TCAATCAGCCGCGGACCCCCCGAGCGTCTTATCCCACCTTGCCAGTGCTG
AAGCGGCTATATTGGAAGATTCGCTGCCGCCCTCACGCCTGAAAATTGCA
AATTTATTCCTGGCGCTCTTTCTCAAATACCCGGAGGGCCAGGAGGATCC
GGGAAGGGCAGCGCGCGTGGCGGTGGACATAGAGCAGGCCATGCAGAACG
TGATGGACCACAAGCTTGCCGCAAAGCAGTACGGAGACAAGGCTCGGTCT
CTCAAGTACAACCTGGGCATGAACGAGCATCTGCGGATGCGTGTTATCCT
AAGCGACGTGGCGCCTGCCGTGCTTGTCGCAATGAAGGCGGACGAAATGC
AGCCCGAGGAGCATCGCCAGGCCGCAGAGGCCGCCGCAGCCTTGGCCTAC
GAGGCAAATCTGCTGGATTGGCACGACAAGAATGCGGACAAGATTCGTAA
ACAGCTGGGAATTGAGGACGTGGGGGGCTCTTTCACATGCGGGCGCTGCA
AGGGGAACAAGACAAGCTATCAAGCCAAGCAGACCCGATCTTCGGATGAG
CCCATGACCATGTTCGTCCGGTGCTTGACGTGTGGCAACCGGTGGAAAGA
ATAA
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Synonyms
Publications