EWM21621.1, cds9048 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|585101876|gb|EWM21621.1| (transcription elongation factor [Nannochloropsis gaditana]) HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0 Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0 Query: 1 MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367 MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE Sbjct: 1 MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|698809400|ref|XP_009837729.1| (transcription elongation factor S-II [Aphanomyces astaci] >gi|574107430|gb|ETV72943.1| transcription elongation factor S-II [Aphanomyces astaci]) HSP 1 Score: 151.369 bits (381), Expect = 5.322e-39 Identity = 118/361 (32.69%), Postives = 164/361 (45.43%), Query Frame = 0 Query: 15 VTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGE---KATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAM------QNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 V +L +L K D D + L T+DMT+ ILK +K G + K + A+ V +A L KKWK + PSD + K+ G P S + + ++ A S + K PV + P++ P T R P+ S+ + + L+D R K+ + L E E A VAV IE AM + + K Y DK R + +NL NE LR ++ ++ L+ M DEM EE R+ + A++ LDW + NADKI K GI+D G FTCGRCK KTS +QTRS+DEPMT+FV C CG RWK Sbjct: 4 VVNLHKRLTKFLAGEDNDQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAE----VVSSKAKHLLKKWKTLASRPSDSDIKVDPDVKSEMGTPKVSPTASDLS---AKDESKWSVKVETIKDEPKRPVKDD----PAATPITIRRAPVHAFSSQRNSTPFEFIPKG----LQDVRATVRRKLKEV-----LSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|673038548|ref|XP_008873235.1| (transcription elongation factor S-II [Aphanomyces invadans] >gi|574471352|gb|ETV98360.1| transcription elongation factor S-II [Aphanomyces invadans]) HSP 1 Score: 150.214 bits (378), Expect = 1.017e-38 Identity = 121/360 (33.61%), Postives = 160/360 (44.44%), Query Frame = 0 Query: 15 VTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPP--PLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLA------AKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 V +L +L K D D + L +DMT+ ILK +K G + K + K D S +A +L KKWK + PSD E P P +SP T GS K P + AP + RP L +Q + P + L+D R K+ + L E + G A VAV IE AM + A K Y DK R L +NL N +LR+ ++ + V L+ M DEM +E R+ + A++ LDW + NADKI K GI+D G FTCGRCK KTS +QTRS+DEPMT+FV C CG RWK Sbjct: 4 VVNLHKRLTKFLAGDDNDQNGVADAMDHLNKVDMTLAILKDTKIGQTIAKLR--KHDAELVS--SKAKILLKKWKTLASRPSDSDIKVEADGKSEPG----------TPGPKVSPTTSDGSL-KDEAKWPEKDETAP----AITIRRPSMHALASQRGSTPFEFIPK-------GLQDVRATVRRKLKEV-----LCLAEAPDLVGEAELVAVAIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|1173946043|gb|OQR94611.1| (transcription elongation factor [Achlya hypogyna]) HSP 1 Score: 149.443 bits (376), Expect = 1.293e-38 Identity = 123/354 (34.75%), Postives = 155/354 (43.79%), Query Frame = 0 Query: 30 RLDAALAG--------DVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLK--YPEGQED-PGRAARVAVDIEQAMQNV--MDHKL----AAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 RL LAG D LG LE+I MT+ ILK+SK G V K + + V E A L KKWK S+ P TS S +T EP P+ + + + +P +++ S+E + S P L + LK ED A VAV IE +M + MD L A K YG K R L +NL NE LR V+ V+ VLV M DE+ +E R + A++++ LDW NADKI KQ GI D G FTCGRCK TS KQTRS+DEPMT+FV C CG RWK Sbjct: 10 RLTKFLAGEGSQSTVVDALGHLESIPMTLSILKESKIGQTVGKLRKHED----PKVAEPAKALVKKWK----------------------------SIALSPRTSASDVT----------AEP------SKPAKNLVAAAVQKIEAKVKTEPKKSVAYTGSSEKVMAATSFIPPGLSTVRATVRRKLKEVLELADEDLRSEAEYVAVAIETSMAKLYGMDKGLETAQAKKDYGSKYRQLSFNLKKNEILRDEVLTQTVSGDVLVNMSPDELATQERRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGRCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 315
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|298711796|emb|CBJ32824.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 145.976 bits (367), Expect = 1.086e-36 Identity = 90/210 (42.86%), Postives = 116/210 (55.24%), Query Frame = 0 Query: 158 STSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIA-NLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 STS PL Q++ S L ++ + +D P RLK+ +F L L E + P ARVA +E AM + Y DKAR L +NL N+ LR V V P LVAM + E+ ++ R+A + A + EA +LDW+DKN DKI KQ GI++ G F CGRCK KT+Y KQTRS+DEPMT FV C C NRWK Sbjct: 162 STSEAVPLSRQTSGSSTSELCTTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIP--TARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 369
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|1214703829|gb|OWZ15779.1| (Transcription elongation factor S-II [Phytophthora megakarya]) HSP 1 Score: 140.198 bits (352), Expect = 3.632e-35 Identity = 117/340 (34.41%), Postives = 154/340 (45.29%), Query Frame = 0 Query: 32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATP--SDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA---KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 D A +VL LE +T ILK++K G V K + K D + A LL K WK +P S+P R ++N +P E+ P + GS G AP P + +S P +P A L+ R K+ + L+ EG DPG+ VA IE AM +A K+Y K R L +NL N LR ++ V+ LV M A+E+ EE R E A++ LDW + N +KI+KQ G E G FTCGRCK +KTS KQTRS+DEPMT+FV C CGNRWK Sbjct: 21 DEGEALEVLRGLEKTHVTYAILKETKMGHTVGKLR--KHDNE--KIASLARLLVKSWKNMALSPRVSEPERKASNSSN-KPKEA---------------PKSSTGSNGLK---------TAPKPEAARVSS-TPFIP-------------------AGLDKVRATVRTKVKEI-----LEASEGG-DPGQ---VAAAIEVAMARTYHMGVAGEQKKEYMAKYRQLSFNLKKNGELRQNLLDDSVSGDQLVKMTAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 302
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|301111450|ref|XP_002904804.1| (transcription elongation factor, putative [Phytophthora infestans T30-4] >gi|262095134|gb|EEY53186.1| transcription elongation factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 135.961 bits (341), Expect = 1.221e-33 Identity = 113/344 (32.85%), Postives = 149/344 (43.31%), Query Frame = 0 Query: 32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATP----SDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA-----KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 D A +VL LE +T ILK++K G V K + + + + A LL K WK +P SDP R + N +E +S GS G AP P+ G S P +P A L+ R K+ + L+ EG G VA IE AM + + + A K Y K R L +NL N LR ++ V+ L+ M A+E+ EE R E A++ LDW + N +KI+KQ G E G FTCGRCK +KTS KQTRS+DEPMT+FV C CGNRWK Sbjct: 21 DQVEALEVLRGLEKTTVTYAILKETKMGHTVGKLRKHENE----KIASLARLLVKSWKNMALSPRPLVSDPERKASSSGNSNKTE--------------VSSKVTSGSNGLK---------TAPKPA-GARPSSAPFIP-------------------AGLDKVRATVRTKLKEI-----LEASEG----GNPGEVAAAIEVAMARI--YHMGAPGEQKKDYMAKYRQLSFNLKKNGDLRQNLLDDSVSGDQLIKMSAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 306
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|635367457|emb|CCI44335.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 135.191 bits (339), Expect = 2.484e-33 Identity = 111/358 (31.01%), Postives = 156/358 (43.58%), Query Frame = 0 Query: 13 ELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVA-TPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA---KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 E V+ L KL + D A D+L LE+ +TV+ILK++K G V K + ++ + ++ L WK + +P + G T RP + P+++ A P S P+ R + +A P + A+ + E NL LA D A VA +IE AM + + K Y K R L +NL N LR ++ V+ L+ M +E+ +E R E A++ LDW D N DKI KQ GIE+ G FTCGRCK +KTS KQTRS+DEPMT+FV+C CGNRWK Sbjct: 2 EEVSQLHRKLLRFQRGDSTDIGEALDLLRALESKPITVNILKETKLGQTVAKLRKHDSE----KIQNQSKSLIHSWKSILTLSPRTNSSSGSSPTAARP--------MAKSPSSACE---------------------AKTPRSEPTKRRETNSSSSTAFLPLGLDKMRATVRTKMKE-----------NLELA--------DADTCNAPDVATEIEIAMARMFNIGFPGENKKDYTAKFRQLSFNLKKNARLREDLLQDAVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 307
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|813192130|ref|XP_012207947.1| (hypothetical protein SPRG_13706 [Saprolegnia parasitica CBS 223.65] >gi|641527076|gb|KDO21392.1| hypothetical protein SPRG_13706 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 134.806 bits (338), Expect = 4.130e-33 Identity = 114/335 (34.03%), Postives = 150/335 (44.78%), Query Frame = 0 Query: 38 DVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNV--MDHKL----AAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 D L L++I MT+ +LK+SK G A+ K + K D A V E+A L KKWK A P T P ++ A+V A+ E VE A +P SA PS LS++ + L++ L + ++ A A+ IE AM + MD L K+Y K R L +NL NE LR V+ V LV M DE+ +E R + A++++ LDW NADKI KQ GI D G FTCG+CK TS KQTRS+DEPMT+FV C CG RWK Sbjct: 29 DGLDHLDSIAMTLSLLKESKIGQAIGKLR--KHDDA--KVAEKAKHLVKKWK---ALALSPRTSATDVTKDAPKKTTEMAAV-------------------AKKLEAKVEKTAEK--------KP------SANFLPSNLSNVRTTVRKKLKEVLELA-----------------DEDLRSEAEFAAMSIETAMAKLYKMDKGLEPADMKKEYTSKFRQLSFNLKKNEMLRDEVLTLTVTADQLVLMTPDELATQELRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGKCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 306
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|567946412|gb|ETK72223.1| (transcription elongation factor S-II [Phytophthora parasitica] >gi|567975104|gb|ETL25673.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|568004560|gb|ETL78880.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|568034484|gb|ETM32153.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|570312605|gb|ETO60553.1| transcription elongation factor S-II [Phytophthora parasitica P1976] >gi|570936370|gb|ETP01627.1| transcription elongation factor S-II [Phytophthora parasitica CJ01A1] >gi|570966688|gb|ETP29807.1| transcription elongation factor S-II [Phytophthora parasitica P10297]) HSP 1 Score: 134.42 bits (337), Expect = 6.152e-33 Identity = 112/340 (32.94%), Postives = 147/340 (43.24%), Query Frame = 0 Query: 32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA-----KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366 D A +VL LE +T ILK++K G V K + + + + A LL K WK +P RPS S +S +IS NG AP P++ TS P +P A L+ R K+ + L+ EG G VA IE AM + + A K Y K R L +NL N LR ++ V+ L+ M A+E+ EE R E A++ LDW + N +KI+KQ G E G FTCGRCK +KTS KQTRS+DEPMT+FV C CGNRWK Sbjct: 21 DQGEALEVLRGLERTTVTYAILKETKMGHTVGKLRKHENE----KIASLARLLVKSWKSMALSP-------------RPSTSEPERKASSNSNINISKTETSSKATAGSNGLKT----APKPAAA-RTSSTPFIP-------------------AGLDKVRATVRTKLKEI-----LEASEG----GSPGEVAAAIEVAMART--YHMGAPGEQKKDYMAKYRQLSFNLKKNGDLRQNLLDDSVSGDQLIKMSAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 308 The following BLAST results are available for this feature:
BLAST of EWM21621.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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