EWM21621.1, cds9048 (CDS) Nannochloropsis gaditana

Overview
NameEWM21621.1
Unique Namecds9048
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:283875..284978 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21621.1
Producttranscription elongation factor
Orig transcript idgnl|cribi|Naga_100012g30.1953.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:283875..284978 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006357regulation of transcription by RNA polymerase II
GO:0032784regulation of DNA-templated transcription, elongation
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR017923TFIIS_N
IPR016492TF_IIS-rel
IPR017890TFS2M
IPR001222Znf_TFIIS
Homology
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|585101876|gb|EWM21621.1| (transcription elongation factor [Nannochloropsis gaditana])

HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query:    1 MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367
            MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE
Sbjct:    1 MAQSHQSSNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|698809400|ref|XP_009837729.1| (transcription elongation factor S-II [Aphanomyces astaci] >gi|574107430|gb|ETV72943.1| transcription elongation factor S-II [Aphanomyces astaci])

HSP 1 Score: 151.369 bits (381), Expect = 5.322e-39
Identity = 118/361 (32.69%), Postives = 164/361 (45.43%), Query Frame = 0
Query:   15 VTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGE---KATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAM------QNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            V +L  +L K       D     D +  L T+DMT+ ILK +K G  + K +   A+     V  +A  L KKWK   + PSD     +   K+  G P  S + + ++   A   S  +      K     PV +     P++ P T R  P+   S+    +    +       L+D     R K+  +     L   E  E    A  VAV IE AM       +  +     K Y DK R + +NL  NE LR  ++   ++   L+ M  DEM  EE R+  +     A++   LDW + NADKI K  GI+D  G FTCGRCK  KTS   +QTRS+DEPMT+FV C  CG RWK
Sbjct:    4 VVNLHKRLTKFLAGEDNDQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAE----VVSSKAKHLLKKWKTLASRPSDSDIKVDPDVKSEMGTPKVSPTASDLS---AKDESKWSVKVETIKDEPKRPVKDD----PAATPITIRRAPVHAFSSQRNSTPFEFIPKG----LQDVRATVRRKLKEV-----LSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|673038548|ref|XP_008873235.1| (transcription elongation factor S-II [Aphanomyces invadans] >gi|574471352|gb|ETV98360.1| transcription elongation factor S-II [Aphanomyces invadans])

HSP 1 Score: 150.214 bits (378), Expect = 1.017e-38
Identity = 121/360 (33.61%), Postives = 160/360 (44.44%), Query Frame = 0
Query:   15 VTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPP--PLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLA------AKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            V +L  +L K       D     D +  L  +DMT+ ILK +K G  + K +  K D    S   +A +L KKWK   + PSD     E      P            P   +SP T  GS  K     P  +  AP      +  RP    L +Q  + P   +          L+D     R K+  +     L   E  +  G A  VAV IE AM    +   A       K Y DK R L +NL  N +LR+ ++ + V    L+ M  DEM  +E R+  +     A++   LDW + NADKI K  GI+D  G FTCGRCK  KTS   +QTRS+DEPMT+FV C  CG RWK
Sbjct:    4 VVNLHKRLTKFLAGDDNDQNGVADAMDHLNKVDMTLAILKDTKIGQTIAKLR--KHDAELVS--SKAKILLKKWKTLASRPSDSDIKVEADGKSEPG----------TPGPKVSPTTSDGSL-KDEAKWPEKDETAP----AITIRRPSMHALASQRGSTPFEFIPK-------GLQDVRATVRRKLKEV-----LCLAEAPDLVGEAELVAVAIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|1173946043|gb|OQR94611.1| (transcription elongation factor [Achlya hypogyna])

HSP 1 Score: 149.443 bits (376), Expect = 1.293e-38
Identity = 123/354 (34.75%), Postives = 155/354 (43.79%), Query Frame = 0
Query:   30 RLDAALAG--------DVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLK--YPEGQED-PGRAARVAVDIEQAMQNV--MDHKL----AAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            RL   LAG        D LG LE+I MT+ ILK+SK G  V K +  +       V E A  L KKWK                            S+   P TS S +T           EP        P+     +    +  +   +P   +++  S+E  +   S  P  L      +   LK       ED    A  VAV IE +M  +  MD  L    A K YG K R L +NL  NE LR  V+   V+  VLV M  DE+  +E R   +     A++++ LDW   NADKI KQ GI D  G FTCGRCK   TS   KQTRS+DEPMT+FV C  CG RWK
Sbjct:   10 RLTKFLAGEGSQSTVVDALGHLESIPMTLSILKESKIGQTVGKLRKHED----PKVAEPAKALVKKWK----------------------------SIALSPRTSASDVT----------AEP------SKPAKNLVAAAVQKIEAKVKTEPKKSVAYTGSSEKVMAATSFIPPGLSTVRATVRRKLKEVLELADEDLRSEAEYVAVAIETSMAKLYGMDKGLETAQAKKDYGSKYRQLSFNLKKNEILRDEVLTQTVSGDVLVNMSPDELATQERRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGRCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 315          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|298711796|emb|CBJ32824.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 145.976 bits (367), Expect = 1.086e-36
Identity = 90/210 (42.86%), Postives = 116/210 (55.24%), Query Frame = 0
Query:  158 STSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIA-NLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            STS   PL  Q++    S L      ++ + +D   P RLK+   +F  L L   E +  P   ARVA  +E AM     +      Y DKAR L +NL  N+ LR  V    V P  LVAM + E+  ++ R+A + A +   EA +LDW+DKN DKI KQ GI++  G F CGRCK  KT+Y  KQTRS+DEPMT FV C  C NRWK
Sbjct:  162 STSEAVPLSRQTSGSSTSELCTTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIP--TARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 369          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|1214703829|gb|OWZ15779.1| (Transcription elongation factor S-II [Phytophthora megakarya])

HSP 1 Score: 140.198 bits (352), Expect = 3.632e-35
Identity = 117/340 (34.41%), Postives = 154/340 (45.29%), Query Frame = 0
Query:   32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATP--SDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA---KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            D   A +VL  LE   +T  ILK++K G  V K +  K D     +   A LL K WK    +P  S+P R    ++N +P E+               P +  GS G            AP P +   +S  P +P                   A L+      R K+  +     L+  EG  DPG+   VA  IE AM       +A    K+Y  K R L +NL  N  LR  ++   V+   LV M A+E+  EE R   E     A++   LDW + N +KI+KQ G E   G FTCGRCK +KTS   KQTRS+DEPMT+FV C  CGNRWK
Sbjct:   21 DEGEALEVLRGLEKTHVTYAILKETKMGHTVGKLR--KHDNE--KIASLARLLVKSWKNMALSPRVSEPERKASNSSN-KPKEA---------------PKSSTGSNGLK---------TAPKPEAARVSS-TPFIP-------------------AGLDKVRATVRTKVKEI-----LEASEGG-DPGQ---VAAAIEVAMARTYHMGVAGEQKKEYMAKYRQLSFNLKKNGELRQNLLDDSVSGDQLVKMTAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 302          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|301111450|ref|XP_002904804.1| (transcription elongation factor, putative [Phytophthora infestans T30-4] >gi|262095134|gb|EEY53186.1| transcription elongation factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 135.961 bits (341), Expect = 1.221e-33
Identity = 113/344 (32.85%), Postives = 149/344 (43.31%), Query Frame = 0
Query:   32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATP----SDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA-----KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            D   A +VL  LE   +T  ILK++K G  V K +  + +     +   A LL K WK    +P    SDP R    + N   +E              +S     GS G            AP P+ G   S  P +P                   A L+      R K+  +     L+  EG    G    VA  IE AM  +  + + A     K Y  K R L +NL  N  LR  ++   V+   L+ M A+E+  EE R   E     A++   LDW + N +KI+KQ G E   G FTCGRCK +KTS   KQTRS+DEPMT+FV C  CGNRWK
Sbjct:   21 DQVEALEVLRGLEKTTVTYAILKETKMGHTVGKLRKHENE----KIASLARLLVKSWKNMALSPRPLVSDPERKASSSGNSNKTE--------------VSSKVTSGSNGLK---------TAPKPA-GARPSSAPFIP-------------------AGLDKVRATVRTKLKEI-----LEASEG----GNPGEVAAAIEVAMARI--YHMGAPGEQKKDYMAKYRQLSFNLKKNGDLRQNLLDDSVSGDQLIKMSAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 306          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|635367457|emb|CCI44335.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 135.191 bits (339), Expect = 2.484e-33
Identity = 111/358 (31.01%), Postives = 156/358 (43.58%), Query Frame = 0
Query:   13 ELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVA-TPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA---KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            E V+ L  KL +       D   A D+L  LE+  +TV+ILK++K G  V K +   ++     +  ++  L   WK  +  +P   +  G   T  RP        +   P+++                       A  P S P+  R     + +A  P  +    A+    + E           NL LA          D   A  VA +IE AM  + +        K Y  K R L +NL  N  LR  ++   V+   L+ M  +E+  +E R   E     A++   LDW D N DKI KQ GIE+  G FTCGRCK +KTS   KQTRS+DEPMT+FV+C  CGNRWK
Sbjct:    2 EEVSQLHRKLLRFQRGDSTDIGEALDLLRALESKPITVNILKETKLGQTVAKLRKHDSE----KIQNQSKSLIHSWKSILTLSPRTNSSSGSSPTAARP--------MAKSPSSACE---------------------AKTPRSEPTKRRETNSSSSTAFLPLGLDKMRATVRTKMKE-----------NLELA--------DADTCNAPDVATEIEIAMARMFNIGFPGENKKDYTAKFRQLSFNLKKNARLREDLLQDAVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 307          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|813192130|ref|XP_012207947.1| (hypothetical protein SPRG_13706 [Saprolegnia parasitica CBS 223.65] >gi|641527076|gb|KDO21392.1| hypothetical protein SPRG_13706 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 134.806 bits (338), Expect = 4.130e-33
Identity = 114/335 (34.03%), Postives = 150/335 (44.78%), Query Frame = 0
Query:   38 DVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNV--MDHKL----AAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            D L  L++I MT+ +LK+SK G A+ K +  K D A   V E+A  L KKWK   A    P       T   P ++   A+V                   A+  E  VE  A          +P      SA   PS LS++ +     L++ L  +                  ++    A   A+ IE AM  +  MD  L      K+Y  K R L +NL  NE LR  V+   V    LV M  DE+  +E R   +     A++++ LDW   NADKI KQ GI D  G FTCG+CK   TS   KQTRS+DEPMT+FV C  CG RWK
Sbjct:   29 DGLDHLDSIAMTLSLLKESKIGQAIGKLR--KHDDA--KVAEKAKHLVKKWK---ALALSPRTSATDVTKDAPKKTTEMAAV-------------------AKKLEAKVEKTAEK--------KP------SANFLPSNLSNVRTTVRKKLKEVLELA-----------------DEDLRSEAEFAAMSIETAMAKLYKMDKGLEPADMKKEYTSKFRQLSFNLKKNEMLRDEVLTLTVTADQLVLMTPDELATQELRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGKCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 306          
BLAST of EWM21621.1 vs. NCBI_GenBank
Match: gi|567946412|gb|ETK72223.1| (transcription elongation factor S-II [Phytophthora parasitica] >gi|567975104|gb|ETL25673.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|568004560|gb|ETL78880.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|568034484|gb|ETM32153.1| transcription elongation factor S-II [Phytophthora parasitica] >gi|570312605|gb|ETO60553.1| transcription elongation factor S-II [Phytophthora parasitica P1976] >gi|570936370|gb|ETP01627.1| transcription elongation factor S-II [Phytophthora parasitica CJ01A1] >gi|570966688|gb|ETP29807.1| transcription elongation factor S-II [Phytophthora parasitica P10297])

HSP 1 Score: 134.42 bits (337), Expect = 6.152e-33
Identity = 112/340 (32.94%), Postives = 147/340 (43.24%), Query Frame = 0
Query:   32 DAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKADGAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSTSRPPPLPTQSAADPPSVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAA-----KQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 366
            D   A +VL  LE   +T  ILK++K G  V K +  + +     +   A LL K WK    +P             RPS S      +S    +IS            NG       AP P++   TS  P +P                   A L+      R K+  +     L+  EG    G    VA  IE AM     + + A     K Y  K R L +NL  N  LR  ++   V+   L+ M A+E+  EE R   E     A++   LDW + N +KI+KQ G E   G FTCGRCK +KTS   KQTRS+DEPMT+FV C  CGNRWK
Sbjct:   21 DQGEALEVLRGLERTTVTYAILKETKMGHTVGKLRKHENE----KIASLARLLVKSWKSMALSP-------------RPSTSEPERKASSNSNINISKTETSSKATAGSNGLKT----APKPAAA-RTSSTPFIP-------------------AGLDKVRATVRTKLKEI-----LEASEG----GSPGEVAAAIEVAMART--YHMGAPGEQKKDYMAKYRQLSFNLKKNGDLRQNLLDDSVSGDQLIKMSAEELATEEKRAQIEKLRDDAFQEARLDWAEANHEKIQKQTGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 308          
The following BLAST results are available for this feature:
BLAST of EWM21621.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101876|gb|EWM21621.1|0.000e+0100.00transcription elongation factor [Nannochloropsis g... [more]
gi|698809400|ref|XP_009837729.1|5.322e-3932.69transcription elongation factor S-II [Aphanomyces ... [more]
gi|673038548|ref|XP_008873235.1|1.017e-3833.61transcription elongation factor S-II [Aphanomyces ... [more]
gi|1173946043|gb|OQR94611.1|1.293e-3834.75transcription elongation factor [Achlya hypogyna][more]
gi|298711796|emb|CBJ32824.1|1.086e-3642.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214703829|gb|OWZ15779.1|3.632e-3534.41Transcription elongation factor S-II [Phytophthora... [more]
gi|301111450|ref|XP_002904804.1|1.221e-3332.85transcription elongation factor, putative [Phytoph... [more]
gi|635367457|emb|CCI44335.1|2.484e-3331.01unnamed protein product [Albugo candida][more]
gi|813192130|ref|XP_012207947.1|4.130e-3334.03hypothetical protein SPRG_13706 [Saprolegnia paras... [more]
gi|567946412|gb|ETK72223.1|6.152e-3332.94transcription elongation factor S-II [Phytophthora... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9078rna9078Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications