rna9070, rna9070 (mRNA) Nannochloropsis gaditana

Overview
Namerna9070
Unique Namerna9070
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1094
Alignment locationKK037251.1:268638..270047 +

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Properties
Property NameValue
Productsmall nuclear ribonucleoprotein sm d1
Orig transcript idgnl|cribi|Naga_100012g22.1951.mrna
Orig protein idgnl|cribi|Naga_100012g22.1951
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:268638..270047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g22gene8796Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9070rna9070-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21619.1cds9040Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9070 ID=rna9070|Name=rna9070|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp
CCGTCGCATCAGCATGCACCTGCGTGCCTATGCTTCCACGCACAATCCCA
TAAGCCATGAAAATTTGGGATGATGTACCGTCTCGTGCAAAGCATAGTAG
AGTCCAGGCCGATCGCAACTGTTCATCGGCAAGCTGGATATGATCATCTC
CCTCCCTACAGACCATCATGCATGTTGTCTTACGTGCCTCTGATTATCTG
GCCAGTCTGCACTATTCTCACCCACACCACCGCATGATTAAACAGATACT
TCCTTCTTTGGGATTACAGCAGCATTGAAAACTTCGGATCAGGACGTTTG
CACGATTGTAAACGCTGACTTTTTGGGTGCGGATAGCGTTGCATAAGCTT
ACTGCGGCATCCGAGAAGCACCATGAAGCTAGTCAGATTTTTGATGAAGC
TGAATAATGAGACCGTCACCATTGAATTGAAGAATGGCACGACCATCCAA
GGCACTATTTCTGGCGTCGACGTGTCGATGAACACGTACCTCAAGAACGT
GAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCGTACGAGAGCCTGTCCA
TCCGTGGCAATAATATTCGCTACTATATTCTGCCGGATGCCCTTAATTTG
GACGCATTGTTGGTGGATGATGGTCCGAAAAATAAGCTGAAGCCCGGGGC
GCAAGCTGGAGGACGGGGTAGGGGGCGCGGAGTTGGCGGGCGGGGTGGGA
GGGGAAGGGGTGGTCCAGGCGGTAGGGGCAGGGGCAGATTTTAAGTAAAT
GACGTAATGTAGATTCTCTTCGAAAAATTTGATCCTGAGGTGGGGTCGGG
ATGCGCGGGAGGGCTGGACAGCAGAGATGCAGGACAGCTCGGGGTAATTG
ATGTACTTCCCTTATATTTGGGACGGTTACCCATTAGTTTCGTGACAGCA
TGTTTCACAAAAACATGATGTTCGGTTGCGAAACGAGTCAGGGGCGATGG
GACGTTCCCGCTTTGGCATGTGCGAGATCCGAGCAACCTTAAAGATCGAA
GAACTAAGGAGTGAGTATAAATTGAGCCTTGTCTGCAATTCATACCATCG
GGAGGCTGCTTCGTCTCCGCCACCGCGAGGCTTTTTTCTAAGCA
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protein sequence of rna9070

>rna9070-protein ID=rna9070-protein|Name=rna9070|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYES
LSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGR
GGRGRGGPGGRGRGRF
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mRNA from alignment at KK037251.1:268638..270047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9070 ID=rna9070|Name=rna9070|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp|location=Sequence derived from alignment at KK037251.1:268638..270047+ (Nannochloropsis gaditana)
TAAGCCATGAAAATTTGGGATGATGTACCGTCTCGTGCAAAGCATAGTAG
AGTCCAGGCCGATCGCAACTGTTCATCGGCAAGCTGGATATgatcatctc
cctccctacagaCCATCATGCATGTTGTCTTACGTGCCTCTGATTATCTG
GCCAGTCTGCACTATTCTCACCCACACCACCGCATGATTAAACAGATACT
TCCTTCTTTGGGATTACAGCAGCATTGAAAACTTCGGATCAGGACGTTTG
CACGATTGTAAACGCTGACTTTTTGGGTGCGGATAGCGTTGGTGAGtctg
cccgctcctcttGAAGTGAAGCCGCAAAGCGCAACGAGTAAGAATAACTC
ACTTGACTACAGCATAAGCTTACTGCGGCATCCGAGAAGCACCATGAAGC
TAGTCAGGTAAAGTGGCATGCACAATCAAAAGGATAGGAGTACAGGCTCC
CGTCGCCCCAGGTCGGATGGTATCGTACATCTTTCACTTTGTCGTGGATG
TTTCCCTTTTTAGGCGTTTGCACCAACACATTCCCTCTCGTCGTAAACCT
TTGCAGATTTTTGATGAAGCTGAATAATGAGACCGTCACCATTGAATTGA
AGAATGGCACGACCATCCAAGGCACTATTTCTGGTACGTCGTCTGTAAAT
TGCAGGCATTTGGTGCACCATTTGTTTTTCCCCAGTGTTGTTTGCATCCT
TCTCAAAATAGCGCCAATAGAGCCATTGCAAGGTGGTGAATGTTACCAAT
AATCTGATGAGCGTTTATATCCACTATAGGCGTCGACGTGTCGATGAACA
CGTACCTCAAGAACGTGAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCG
TACGAGAGCCTGTCCATCCGTGGCAATAATATTCGCTACTATATTCTGCC
GGATGCCCTTAATTTGGACGCATTGTTGGTGGATGATGGTCCGAAAAATA
AGCTGAAGCCCGGGGCGCAagctggaggacggggtaGGGGGCGCGGAGTt
ggcgggcggggtgggaggggaaggggtggtccAGGCGgtaggggcagggg
cagatTTTAAGTAAATGACGTAATGTAGATTCTCTTCGAAAAATTTGATC
CTGAGGTGGGGTCGGGATGCGCGGGAGGGCTGGACAGCAGAGATGCAGGA
CAGCTCGGGGTAATTGATGTACTTCCCTTATATTTGGGACGGTTACCCAT
TAGTTTCGTGACAGCATGTTTCACAAAAACATGATGTTCGGTTGCGAAAC
GAGTCAGGGGCGATGGGACGTTCCCGCTTTGGCATGTGCGAGATCCGAGC
AACCTTAAAGATCGAAGAACTAAGGAGTGAGTATAAATTGAGCCTTGTCT
GCAATTCATACCATCGGGAGGCTGCTTCGTCTCCGCCACCGCGAGGCTTT
TTTCTAAGCA
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Coding sequence (CDS) from alignment at KK037251.1:268638..270047+

>rna9070 ID=rna9070|Name=rna9070|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at KK037251.1:268638..270047+ (Nannochloropsis gaditana)
ATGAAGCTGAATAATGAGACCGTCACCATTGAATTGAAGAATGGCACGAC
CATCCAAGGCACTATTTCTGGCGTCGACGTGTCGATGAACACGTACCTCA
AGAACGTGAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCGTACGAGAGC
CTGTCCATCCGTGGCAATAATATTCGCTACTATATTCTGCCGGATGCCCT
TAATTTGGACGCATTGTTGGTGGATGATGGTCCGAAAAATAAGCTGAAGC
CCGGGGCGCAagctggaggacggggtaGGGGGCGCGGAGTtggcgggcgg
ggtgggaggggaaggggtggtccAGGCGgtaggggcaggggcagatTTTA
AATGAAGCTGAATAATGAGACCGTCACCATTGAATTGAAGAATGGCACGA
CCATCCAAGGCACTATTTCTGGCGTCGACGTGTCGATGAACACGTACCTC
AAGAACGTGAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCGTACGAGAG
CCTGTCCATCCGTGGCAATAATATTCGCTACTATATTCTGCCGGATGCCC
TTAATTTGGACGCATTGTTGGTGGATGATGGTCCGAAAAATAAGCTGAAG
CCCGGGGCGCAagctggaggacggggtaGGGGGCGCGGAGTtggcgggcg
gggtgggaggggaaggggtggtccAGGCGgtaggggcaggggcagatTTT
AA
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Synonyms
Publications