EWM21619.1, cds9040 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|585101875|gb|EWM21620.1| (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana]) HSP 1 Score: 224.557 bits (571), Expect = 3.827e-74 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116
MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF
Sbjct: 8 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 123
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|585101874|gb|EWM21619.1| (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana]) HSP 1 Score: 224.172 bits (570), Expect = 4.879e-74 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116
MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF
Sbjct: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|553183167|ref|XP_005853851.1| (small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526] >gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 197.978 bits (502), Expect = 8.687e-64 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG 101
MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG
Sbjct: 8 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG 108
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|970633334|gb|KUF79045.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora nicotianae] >gi|970658425|gb|KUF96191.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora nicotianae]) HSP 1 Score: 143.665 bits (361), Expect = 1.027e-41 Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG
Sbjct: 46 MKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 135
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|675204513|ref|XP_008911141.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica INRA-310] >gi|566015144|gb|ETI38055.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P1569] >gi|567952601|gb|ETK78273.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|567981260|gb|ETL31703.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568010807|gb|ETL84990.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568040652|gb|ETM38100.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568088511|gb|ETN03368.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica INRA-310] >gi|570318876|gb|ETO66824.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P1976] >gi|570942683|gb|ETP07940.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica CJ01A1] >gi|570973322|gb|ETP35983.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P10297]) HSP 1 Score: 141.354 bits (355), Expect = 2.384e-41 Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG
Sbjct: 8 MKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 97
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|301090235|ref|XP_002895342.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans T30-4] >gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans T30-4]) HSP 1 Score: 140.969 bits (354), Expect = 2.675e-41 Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG
Sbjct: 1 MKLSNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 90
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|303277487|ref|XP_003058037.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 139.043 bits (349), Expect = 2.382e-40 Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 0
Query: 2 KLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQ 87
KL++ET TIELKNGT + GTI GVD+SMNT+LKNVK+TLKGKNPVS + LS+RGNNIRYYILPD+LNLD LLVDD PK K KPGA+
Sbjct: 9 KLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGNNIRYYILPDSLNLDTLLVDDTPKIKSKPGAK 94
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|698795738|ref|XP_009830898.1| (small nuclear ribonucleoprotein Sm D1 [Aphanomyces astaci] >gi|574114474|gb|ETV79962.1| small nuclear ribonucleoprotein Sm D1 [Aphanomyces astaci]) HSP 1 Score: 137.117 bits (344), Expect = 1.456e-39 Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLK 83
MKL NETVTIELKNGT + GTISGVD+SMNT+LK VK+T+KGKNP S +SLSIRGNNIRYYILPD+LNLD LL+DD PK K+K
Sbjct: 8 MKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQKVK 90
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|673045141|ref|XP_008876531.1| (small nuclear ribonucleoprotein Sm D1 [Aphanomyces invadans] >gi|574467919|gb|ETV94940.1| small nuclear ribonucleoprotein Sm D1 [Aphanomyces invadans]) HSP 1 Score: 135.576 bits (340), Expect = 6.742e-39 Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKL 82
MKL NETVTIELKNGT + GTISGVD+SMNT+LK VK+T+KGKNP S +SLSIRGNNIRYYILPD+LNLD LL+DD PK K+
Sbjct: 8 MKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQKV 89
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|676382343|ref|XP_009034450.1| (hypothetical protein AURANDRAFT_22657 [Aureococcus anophagefferens] >gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus anophagefferens]) HSP 1 Score: 134.035 bits (336), Expect = 1.790e-38 Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0
Query: 1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQA 88
MKLNNETVTIELKNGT +QGTISGVD+SMNT+LKN +T KGKN V Y++LS+RG+N+RYYILPD+LNLD LL+DD PK K+K A
Sbjct: 8 MKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSVRGSNVRYYILPDSLNLDTLLIDDTPKQKVKAAGAA 95 The following BLAST results are available for this feature:
BLAST of EWM21619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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