EWM21619.1, cds9040 (CDS) Nannochloropsis gaditana

Overview
NameEWM21619.1
Unique Namecds9040
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:269201..269270 +
Alignment locationKK037251.1:269417..269697 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21619.1
Productsmall nuclear ribonucleoprotein sm d1
Orig transcript idgnl|cribi|Naga_100012g22.1951.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:269201..269270 +
KK037251.1supercontigKK037251.1:269417..269697 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|585101875|gb|EWM21620.1| (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana])

HSP 1 Score: 224.557 bits (571), Expect = 3.827e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116
            MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF
Sbjct:    8 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 123          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|585101874|gb|EWM21619.1| (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana])

HSP 1 Score: 224.172 bits (570), Expect = 4.879e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116
            MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF
Sbjct:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRGGRGRGGPGGRGRGRF 116          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|553183167|ref|XP_005853851.1| (small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526] >gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.978 bits (502), Expect = 8.687e-64
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG 101
            MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG
Sbjct:    8 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGRGRGVGGRG 108          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|970633334|gb|KUF79045.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora nicotianae] >gi|970658425|gb|KUF96191.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora nicotianae])

HSP 1 Score: 143.665 bits (361), Expect = 1.027e-41
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
            MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG 
Sbjct:   46 MKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 135          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|675204513|ref|XP_008911141.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica INRA-310] >gi|566015144|gb|ETI38055.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P1569] >gi|567952601|gb|ETK78273.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|567981260|gb|ETL31703.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568010807|gb|ETL84990.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568040652|gb|ETM38100.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica] >gi|568088511|gb|ETN03368.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica INRA-310] >gi|570318876|gb|ETO66824.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P1976] >gi|570942683|gb|ETP07940.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica CJ01A1] >gi|570973322|gb|ETP35983.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora parasitica P10297])

HSP 1 Score: 141.354 bits (355), Expect = 2.384e-41
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
            MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG 
Sbjct:    8 MKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 97          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|301090235|ref|XP_002895342.1| (small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans T30-4] >gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans T30-4])

HSP 1 Score: 140.969 bits (354), Expect = 2.675e-41
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGG 90
            MKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T+KGKNPV+ +SLSIRGNNIRYYILPD+LNLD LL+DD P+ K+K GA AG 
Sbjct:    1 MKLSNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKVKAGAPAGS 90          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|303277487|ref|XP_003058037.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 139.043 bits (349), Expect = 2.382e-40
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 0
Query:    2 KLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQ 87
            KL++ET TIELKNGT + GTI GVD+SMNT+LKNVK+TLKGKNPVS + LS+RGNNIRYYILPD+LNLD LLVDD PK K KPGA+
Sbjct:    9 KLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGNNIRYYILPDSLNLDTLLVDDTPKIKSKPGAK 94          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|698795738|ref|XP_009830898.1| (small nuclear ribonucleoprotein Sm D1 [Aphanomyces astaci] >gi|574114474|gb|ETV79962.1| small nuclear ribonucleoprotein Sm D1 [Aphanomyces astaci])

HSP 1 Score: 137.117 bits (344), Expect = 1.456e-39
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLK 83
            MKL NETVTIELKNGT + GTISGVD+SMNT+LK VK+T+KGKNP S +SLSIRGNNIRYYILPD+LNLD LL+DD PK K+K
Sbjct:    8 MKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQKVK 90          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|673045141|ref|XP_008876531.1| (small nuclear ribonucleoprotein Sm D1 [Aphanomyces invadans] >gi|574467919|gb|ETV94940.1| small nuclear ribonucleoprotein Sm D1 [Aphanomyces invadans])

HSP 1 Score: 135.576 bits (340), Expect = 6.742e-39
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKL 82
            MKL NETVTIELKNGT + GTISGVD+SMNT+LK VK+T+KGKNP S +SLSIRGNNIRYYILPD+LNLD LL+DD PK K+
Sbjct:    8 MKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQKV 89          
BLAST of EWM21619.1 vs. NCBI_GenBank
Match: gi|676382343|ref|XP_009034450.1| (hypothetical protein AURANDRAFT_22657 [Aureococcus anophagefferens] >gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus anophagefferens])

HSP 1 Score: 134.035 bits (336), Expect = 1.790e-38
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0
Query:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQA 88
            MKLNNETVTIELKNGT +QGTISGVD+SMNT+LKN  +T KGKN V Y++LS+RG+N+RYYILPD+LNLD LL+DD PK K+K    A
Sbjct:    8 MKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSVRGSNVRYYILPDSLNLDTLLIDDTPKQKVKAAGAA 95          
The following BLAST results are available for this feature:
BLAST of EWM21619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101875|gb|EWM21620.1|3.827e-74100.00small nuclear ribonucleoprotein sm d1 [Nannochloro... [more]
gi|585101874|gb|EWM21619.1|4.879e-74100.00small nuclear ribonucleoprotein sm d1 [Nannochloro... [more]
gi|553183167|ref|XP_005853851.1|8.687e-64100.00small nuclear ribonucleoprotein D1, partial [Nanno... [more]
gi|970633334|gb|KUF79045.1|1.027e-4174.44small nuclear ribonucleoprotein Sm D1 [Phytophthor... [more]
gi|675204513|ref|XP_008911141.1|2.384e-4174.44small nuclear ribonucleoprotein Sm D1 [Phytophthor... [more]
gi|301090235|ref|XP_002895342.1|2.675e-4174.44small nuclear ribonucleoprotein Sm D1 [Phytophthor... [more]
gi|303277487|ref|XP_003058037.1|2.382e-4076.74predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|698795738|ref|XP_009830898.1|1.456e-3978.31small nuclear ribonucleoprotein Sm D1 [Aphanomyces... [more]
gi|673045141|ref|XP_008876531.1|6.742e-3978.05small nuclear ribonucleoprotein Sm D1 [Aphanomyces... [more]
gi|676382343|ref|XP_009034450.1|1.790e-3871.59hypothetical protein AURANDRAFT_22657 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9070rna9070Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications