EWM21569.1, cds9038 (CDS) Nannochloropsis gaditana

Overview
NameEWM21569.1
Unique Namecds9038
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:267214..268419 +

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Properties
Property NameValue
Protein idEWM21569.1
ProductTetratricopeptide-like helical
Orig transcript idgnl|cribi|Naga_100012g21.1901.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:267214..268419 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM21569.1 vs. NCBI_GenBank
Match: gi|585101824|gb|EWM21569.1| (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR 401
            MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR
Sbjct:    1 MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR 401          
BLAST of EWM21569.1 vs. NCBI_GenBank
Match: gi|299115929|emb|CBN75936.1| (TPR repeat-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 62.7734 bits (151), Expect = 2.131e-7
Identity = 71/274 (25.91%), Postives = 122/274 (44.53%), Query Frame = 0
Query:  137 DPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDR-------------IFHYHAEALARHPEDVESLIAAGEAY----ARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAE-VLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFES 392
            + PP++C Q  GDL YVP  W+ M +++G+ + V G+ V  G  R + G  E ++ R             + H    AL    E V+  +    A     ARQ L A  T++  S        +  A+  RP  P TH++ A+ L  ++    +E    A+ +I  A + F   + P    PD       + LA  +L  A+FFL   D  +A+  +    L+L P + +A   L + +   G++  A+  +  A+I +    R  +  ++FE+
Sbjct:   19 ETPPMECIQNAGDLFYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDG-LELLQQRPGDPELLHAIGVGLAHRGISALEYEGEGVKIEMDHSTAMDMIRARQMLPAKQTIDLAS------ENLRKAIADRPGCPETHIILAETL--HKGGDGEE----AEKVIEEAWKIFSRDALPDG-VPD-------STLAVVQLNLARFFLQAQDGDKAEAYLRNGTLSLLPEHGDALADLAVAMAMQGKENPAK--LEQAVIMIEKAERNGASGKSFEN 269          
The following BLAST results are available for this feature:
BLAST of EWM21569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101824|gb|EWM21569.1|0.000e+0100.00Tetratricopeptide-like helical [Nannochloropsis ga... [more]
gi|299115929|emb|CBN75936.1|2.131e-725.91TPR repeat-containing protein [Ectocarpus siliculo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9068rna9068Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications