EWM21586.1, cds9026 (CDS) Nannochloropsis gaditana

Overview
NameEWM21586.1
Unique Namecds9026
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:227462..227843 -
Alignment locationKK037251.1:226996..227327 -
Alignment locationKK037251.1:226586..226819 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21586.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100012g8.1918.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:227462..227843 -
KK037251.1supercontigKK037251.1:226996..227327 -
KK037251.1supercontigKK037251.1:226586..226819 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA-14
IPR013783Ig-like_fold
Homology
[Close]
BLAST of EWM21586.1 vs. NCBI_GenBank
Match: gi|585101841|gb|EWM21586.1| (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0 
Query:    1 MNQRSGIDHHHIYSTETKEEENGGRDILPLEMEDGRKAESAPPAEVKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSPPPPGVTPAAVGNGQIINSIGEAISQGIQRLRGGRQGAASQVSAAPGNRGPNPVASSPFPGSRRSDPINSMPGTATSGAPFSNTQNTAGVQP 315
            MNQRSGIDHHHIYSTETKEEENGGRDILPLEMEDGRKAESAPPAEVKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSPPPPGVTPAAVGNGQIINSIGEAISQGIQRLRGGRQGAASQVSAAPGNRGPNPVASSPFPGSRRSDPINSMPGTATSGAPFSNTQNTAGVQP
Sbjct:    1 MNQRSGIDHHHIYSTETKEEENGGRDILPLEMEDGRKAESAPPAEVKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSPPPPGVTPAAVGNGQIINSIGEAISQGIQRLRGGRQGAASQVSAAPGNRGPNPVASSPFPGSRRSDPINSMPGTATSGAPFSNTQNTAGVQP 315
[Close]
BLAST of EWM21586.1 vs. NCBI_GenBank
Match: gi|585109289|gb|EWM27112.1| (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana] >gi|585109290|gb|EWM27113.1| hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 88.1965 bits (217), Expect = 2.325e-16
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 0 
Query:   49 RGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQ 188
            R  C RH+GK I LG+   +L+ L I I +  P+ P  TL   S L +DG     AT     +++N N Y ++F++L  +VYD +G  +G + RP RF+V GR+T  + AT   + +  ++ ++G++C+QN  +T L+L+
Sbjct:  105 RTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTG--ATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLR 242
The following BLAST results are available for this feature:
BLAST of EWM21586.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101841|gb|EWM21586.1|0.000e+0100.00hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
gi|585109289|gb|EWM27112.1|2.325e-1635.71hypothetical protein Naga_100046g29 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9056rna9056Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications