rna9056, rna9056 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9056
Unique Name	rna9056
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	501
Alignment location	KK037251.1:225965..228309 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g8.1918.mrna
Orig protein id	gnl\|cribi\|Naga_100012g8.1918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:225965..228309 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g8	gene8783	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9056	rna9056-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21586.1	cds9026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:225965..228309-
coding sequence from alignment at KK037251.1:225965..228309-

mRNA sequence

>rna9056 ID=rna9056|Name=rna9056|organism=Nannochloropsis gaditana|type=mRNA|length=501bp
ATGCCTGCTTGCCTGGATAGAGAGGGAGATGGCCATGGGGGAAACCAGGA
TGTGGTGGAGATGCGGGCGGACGGGGATTGGGACGTCGAAGAGAGTGACG
ACGCCTTTTTCGCGCTGGGTCTCCTCTCTCCAGTGGCAGCGGGCCGGGCG
GCGGCTGAGACCGAGGGGATTGAGCTTTCAAAACGTAAAAGGGGTAACGG
CTCTGACCTGAAGGGAAGGGGAGCTTCGCGCCAAAAAACAAAACGAACCG
TGCGCTCTTTTTGGCGCGAAACAAGCCTTTCCAATCCTGCCACAAACAGC
ACGCTTTCTGGTAAAAAGGAATATCGCTCTCTCTTTTTCCATTCAAGGAG
GAGCTGTTTAACAAAATTTGGAGGAATGTGCGTGGGCACTGGAGAATCTC
CTCGGGTGGTATCAACGTACTCTGCGGAAAGAGTGTCGGAAGGTTGGGGA
TCAGCCCGGGCTTCAAAAAGAGAAACTGTGGAAAGGAATGGGGGTACTTA
G

protein sequence of rna9056

>rna9056-protein ID=rna9056-protein|Name=rna9056|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MNQRSGIDHHHIYSTETKEEENGGRDILPLEMEDGRKAESAPPAEVKKRG
FCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLG
AGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQG
RSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTF
RTQVGPMEQLTQCVATNIAGGSSPPPPGVTPAAVGNGQIINSIGEAISQG
IQRLRGGRQGAASQVSAAPGNRGPNPVASSPFPGSRRSDPINSMPGTATS
GAPFSNTQNTAGVQP

mRNA from alignment at KK037251.1:225965..228309-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9056 ID=rna9056|Name=rna9056|organism=Nannochloropsis gaditana|type=mRNA|length=2345bp|location=Sequence derived from alignment at KK037251.1:225965..228309- (Nannochloropsis gaditana)
GCGTGTTGGGCGCGTGAAGAAGACCAGCAGTTCCCAGCTTACTAGACGTC
GAGCGGATTGAAACGAGTAATAAACATACCAAGGCTTTTTTTTGTCCATT
TGATATTCGAATATCCTTTTTGTCACGGCGGACACTGGATCGGAAGAACA
GTTGTGTGTGTCTTGGAGCTTCATGTAACAGCGCTTGCGAGCAGGTGATG
ATTCCTTATCTAATCCTATTTTTTTCCATCCTTGTCGCTCAAACGTTGAG
AATCAATTACATCAAGGATTCTCCTTGATTATTCGTTTCGTCTGCATCGC
TTTCGGGTCTCAAGGGGCCATGATCTTCCGATATCCAGGATACTTTACCT
CTGCTCAGCTACCTCCCCCTCCCCTATCTTGTGCCCGCCCCACCTCATCA
AGCAGGCCGATATCCTGGATAACTCAGCAATTCTGATAGTGTAAAACTCG
GATATAAAAGTGAAGGATGAATCAGAGGAGCGGAATCGACCATCATCACA
TCTACTCGACCGAGACCAAAGAGGAAGAAAATGGAGGTCGGGATATTCTG
CCCTTGGAAATGGAAGACGGCCGTAAGGCCGAGTCTGCCCCCCCGGCCGA
GGTTAAAAAGCGCGGTTTTTGCGCTCGGCACAAAGGGAAACTGATTTTTC
TTGGCATAGTTGCCTTGATTCTCATTGCCTTGGCCATCGCCATTCCTTTG
CTCATGCCAAAGGACCCGACGGCGACTTTGCTAGAGCAAAGCAACTTGCG
GTTGGACGGTTTGGGAGCGGGAAGCGCGACGATAGACCTGACCATGAAAG
TGCAGAATCCAAACCCGTATGCGATCGCTTTTGAAGACCTCCGGCTCGGT
AGGATGGGGGGGAAAGGGAAAGAAAGGGAGGCGCTGGGATGTAGATGGCA
TGAGACCTCTGGCTCCCTCAACGTGCTGAGCGCCCCACCTCATTGCCCGT
GCTTGCCCATTTCGATGTATCCTTTCCTCCAGATGTTTACGATTTCAGCG
GTGCGCACATTGGCGAGCTGACACGACCCGAGCGATTCCGTGTCCAGGGC
CGGTCTACGAACATCATGAATGCCACCGCCACCATGCAGCCTTCCTTCTT
TGAGATCCTCTCCATGGGCGTGAACTGCCTGCAGAACGACAACCTGACGA
AGCTTAAGCTCCAAGGCACTGTGCAAGCGCGCTTCGCGGGCAGGACGTTT
CGCACACAGGTGGGCCCGATGGAGCAGCTGACGCAGTGCGTGGCGACCAA
CATTGCCGGTGGATCATCCCCTCCGCCCCCGGGGGTGACCCCTGCAGCGG
TGGGAAATGGGCAGGTAGGCGACATTACCGGTTGCGGGATGGGGCGGGGG
AGGACCCGGGTTAGCAAGTGAGATTACCTTCGGAGCTTCGGCGTGGCTAG
GCTTGCTTTCCCTGGGGCTGGGAACGTTTCCCACCCCACTCACCCCTCTT
TTTCCCCACTCACTTTATTCGGGATACCTTGTGGGCACAGATTATCAACA
GTATAGGAGAAGCGATCAGCCAGGGGATTCAGCGGCTTCGAGGGGGGCGA
CAGGGGGCGGCCAGCCAGGTCTCGGCGGCCCCCGGGAACAGGGGGCCCAA
CCCCGTGGCGAGCTCCCCGTTCCCGGGATCACGACGATCCGACCCGATAA
ATTCCATGCCTGGGACTGCTACGTCTGGGGCACCATTCTCAAACACACAG
AACACGGCAGGTGTGCAGCCTTAATTTAAGGAGATCGGGCCGTCGAGTGT
ATGAGGGAAGGAGGAAATGGCGGCCACGGCGATTAACGCAGGAATGGCGT
CTTTTAGCAAAGGAGCAGTTTTCCTCCTGCTGACCGTTATAGGGTAAAAA
TATATATTCTACGTGGTGCGAGGTTGTCTTTTCACTAAGAGGATGCCGAA
TAGTGGCGTGTTATGAGTTGTTGGGACGACGGCGCTTGTGTGCCGTTGGT
TTTTCGGGGTTTTGTTTTTCAACGATTGATTTGACAGCGTTTTGAGTGTG
AATGTTTGCCTAAAAGTAATGATGCACAGCAGAAAAGGGGTATATAAAAG
ATGTACGTGGCCCTTGGGGTCTCAAAATTGAACAGTTGAAAGTCAAACGG
ACGCAGGGGGAAATGAAAGCGCAGTCTCAACGACACAAACCTGCCAGCTT
TCGGGCGTGAAGTACAGCCACTGAAATTTTTTTCAGTCGTCTTTAAGCGA
TAGCATGATCTGAAGTGAGACAGAAGTGAACGAAGACGACAGCGAAGAAG
GAAGACTTACAGAAGAGGGCCTTCCCAGTGGCATCTTTACCCCGCCGAAG
CGAGAAGAGCCAGGAACTTAATTACTTTTCCTCATCTGAATGAGT

Coding sequence (CDS) from alignment at KK037251.1:225965..228309-

>rna9056 ID=rna9056|Name=rna9056|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at KK037251.1:225965..228309- (Nannochloropsis gaditana)
ATTATCAACAGTATAGGAGAAGCGATCAGCCAGGGGATTCAGCGGCTTCG
AGGGGGGCGACAGGGGGCGGCCAGCCAGGTCTCGGCGGCCCCCGGGAACA
GGGGGCCCAACCCCGTGGCGAGCTCCCCGTTCCCGGGATCACGACGATCC
GACCCGATAAATTCCATGCCTGGGACTGCTACGTCTGGGGCACCATTCTC
AAACACACAGAACACGGCAGGTGTGCAGCCTTAAATGTTTACGATTTCAG
CGGTGCGCACATTGGCGAGCTGACACGACCCGAGCGATTCCGTGTCCAGG
GCCGGTCTACGAACATCATGAATGCCACCGCCACCATGCAGCCTTCCTTC
TTTGAGATCCTCTCCATGGGCGTGAACTGCCTGCAGAACGACAACCTGAC
GAAGCTTAAGCTCCAAGGCACTGTGCAAGCGCGCTTCGCGGGCAGGACGT
TTCGCACACAGGTGGGCCCGATGGAGCAGCTGACGCAGTGCGTGGCGACC
AACATTGCCGGTGGATCATCCCCTCCGCCCCCGGGGGTGACCCCTGCAGC
GGTGGGAAATGGGCAGATGAATCAGAGGAGCGGAATCGACCATCATCACA
TCTACTCGACCGAGACCAAAGAGGAAGAAAATGGAGGTCGGGATATTCTG
CCCTTGGAAATGGAAGACGGCCGTAAGGCCGAGTCTGCCCCCCCGGCCGA
GGTTAAAAAGCGCGGTTTTTGCGCTCGGCACAAAGGGAAACTGATTTTTC
TTGGCATAGTTGCCTTGATTCTCATTGCCTTGGCCATCGCCATTCCTTTG
CTCATGCCAAAGGACCCGACGGCGACTTTGCTAGAGCAAAGCAACTTGCG
GTTGGACGGTTTGGGAGCGGGAAGCGCGACGATAGACCTGACCATGAAAG
TGCAGAATCCAAACCCGTATGCGATCGCTTTTGAAGACCTCCGGCTCGAT
TATCAACAGTATAGGAGAAGCGATCAGCCAGGGGATTCAGCGGCTTCGAG
GGGGGCGACAGGGGGCGGCCAGCCAGGTCTCGGCGGCCCCCGGGAACAGG
GGGCCCAACCCCGTGGCGAGCTCCCCGTTCCCGGGATCACGACGATCCGA
CCCGATAAATTCCATGCCTGGGACTGCTACGTCTGGGGCACCATTCTCAA
ACACACAGAACACGGCAGGTGTGCAGCCTTAAATGTTTACGATTTCAGCG
GTGCGCACATTGGCGAGCTGACACGACCCGAGCGATTCCGTGTCCAGGGC
CGGTCTACGAACATCATGAATGCCACCGCCACCATGCAGCCTTCCTTCTT
TGAGATCCTCTCCATGGGCGTGAACTGCCTGCAGAACGACAACCTGACGA
AGCTTAAGCTCCAAGGCACTGTGCAAGCGCGCTTCGCGGGCAGGACGTTT
CGCACACAGGTGGGCCCGATGGAGCAGCTGACGCAGTGCGTGGCGACCAA
CATTGCCGGTGGATCATCCCCTCCGCCCCCGGGGGTGACCCCTGCAGCGG
TGGGAAATGGGCAGATGAATCAGAGGAGCGGAATCGACCATCATCACATC
TACTCGACCGAGACCAAAGAGGAAGAAAATGGAGGTCGGGATATTCTGCC
CTTGGAAATGGAAGACGGCCGTAAGGCCGAGTCTGCCCCCCCGGCCGAGG
TTAAAAAGCGCGGTTTTTGCGCTCGGCACAAAGGGAAACTGATTTTTCTT
GGCATAGTTGCCTTGATTCTCATTGCCTTGGCCATCGCCATTCCTTTGCT
CATGCCAAAGGACCCGACGGCGACTTTGCTAGAGCAAAGCAACTTGCGGT
TGGACGGTTTGGGAGCGGGAAGCGCGACGATAGACCTGACCATGAAAGTG
CAGAATCCAAACCCGTATGCGATCGCTTTTGAAGACCTCCGGCTCGATTA
TCAACAGTATAGGAGAAGCGATCAGCCAGGGGATTCAGCGGCTTCGAGGG
GGGCGACAGGGGGCGGCCAGCCAGGTCTCGGCGGCCCCCGGGAACAGGGG
GCCCAACCCCGTGGCGAGCTCCCCGTTCCCGGGATCACGACGATCCGACC
CGATAAATTCCATGCCTGGGACTGCTACGTCTGGGGCACCATTCTCAAAC
ACACAGAACACGGCAGGTGTGCAGCCTTAAATGTTTACGATTTCAGCGGT
GCGCACATTGGCGAGCTGACACGACCCGAGCGATTCCGTGTCCAGGGCCG
GTCTACGAACATCATGAATGCCACCGCCACCATGCAGCCTTCCTTCTTTG
AGATCCTCTCCATGGGCGTGAACTGCCTGCAGAACGACAACCTGACGAAG
CTTAAGCTCCAAGGCACTGTGCAAGCGCGCTTCGCGGGCAGGACGTTTCG
CACACAGGTGGGCCCGATGGAGCAGCTGACGCAGTGCGTGGCGACCAACA
TTGCCGGTGGATCATCCCCTCCGCCCCCGGGGGTGACCCCTGCAGCGGTG
GGAAATGGGCAGATGAATCAGAGGAGCGGAATCGACCATCATCACATCTA
CTCGACCGAGACCAAAGAGGAAGAAAATGGAGGTCGGGATATTCTGCCCT
TGGAAATGGAAGACGGCCGTAAGGCCGAGTCTGCCCCCCCGGCCGAGGTT
AAAAAGCGCGGTTTTTGCGCTCGGCACAAAGGGAAACTGATTTTTCTTGG
CATAGTTGCCTTGATTCTCATTGCCTTGGCCATCGCCATTCCTTTGCTCA
TGCCAAAGGACCCGACGGCGACTTTGCTAGAGCAAAGCAACTTGCGGTTG
GACGGTTTGGGAGCGGGAAGCGCGACGATAGACCTGACCATGAAAGTGCA
GAATCCAAACCCGTATGCGATCGCTTTTGAAGACCTCCGGCTCG

Synonyms

Publications