EWM21656.1, cds9018 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|585101913|gb|EWM21656.1| (lysyl-trna synthetase, partial [Nannochloropsis gaditana]) HSP 1 Score: 384.415 bits (986), Expect = 4.354e-135 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE Sbjct: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|635358901|emb|CCI11409.1| (unnamed protein product [Albugo candida] >gi|635370255|emb|CCI41553.1| unnamed protein product [Albugo candida]) HSP 1 Score: 133.65 bits (335), Expect = 7.595e-33 Identity = 82/191 (42.93%), Postives = 104/191 (54.45%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPS--AVRRWYQTLSQFVPAVRESW 189 R RF++Q AA GDDEAQ HDE FC A+E+ LPPTGGWGCGIDRLAMFL++K NIKEVLLFPAMKPD P++ +SG S V AT GSVD + L R L++ +F+ G E PS D F + Q + ++ L VR+W Q + F +R +W Sbjct: 518 RERFIEQTRQAAAGDDEAQPHDEAFCTAMEYGLPPTGGWGCGIDRLAMFLSNKFNIKEVLLFPAMKPD-------------EQPSTNESSGE---SVCVSAT----------GSVD-LDALERSLTSSAFING-ESPSKADIRSFELV-----------QVIENERLSKYPNVRKWVQYVGAFPREIRAAW 669
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|325188444|emb|CCA22980.1| (lysyltRNA synthetase putative [Albugo laibachii Nc14]) HSP 1 Score: 132.494 bits (332), Expect = 1.639e-32 Identity = 82/189 (43.39%), Postives = 102/189 (53.97%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189 R RF++Q AA+GDDEAQ HDE FC A+E+ LPPTGGWGCGIDRLAMFL++K NIKEVLLFPAMKPD P+ + GS V P+ GSVD ++ L L+ +F+ G E PS DA F +K +V P+ VR+W Q + F VR W Sbjct: 518 RERFIEQTRQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGIDRLAMFLSNKFNIKEVLLFPAMKPDDQPSV---------------SEGSGESVGVSPS-----------GSVD-VEALEMSLTRGAFVNG-EAPSKADARAFDQVKV--------MDNVVLGKYPN-VRKWVQYVGAFSAEVRSKW 669
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|299472298|emb|CBN79710.1| (Lysyl-tRNA ligase [Ectocarpus siliculosus]) HSP 1 Score: 125.176 bits (313), Expect = 8.684e-30 Identity = 81/196 (41.33%), Postives = 107/196 (54.59%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGT--------DVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPS--AVRRWYQTLSQFVPAVR 186 R RFL Q+ + GDDEAQVHDEEFC A+E+ LPPT GWG G+DRL MFL+DK+NIKEVLLFPAMKP+ A +++ P + + A A + PP + D+ S G+Q+L L +SFLGG P + DA V+ A SV L + AV+ W T+ F P++R Sbjct: 492 RQRFLDQSKASVAGDDEAQVHDEEFCTAMEYGLPPTAGWGVGVDRLTMFLSDKNNIKEVLLFPAMKPE----ETAAQQSTSRGIGMAPAAAAAAAPAAKAAVSYPPLFASGSSLLKDVDLASTTGIQKLEGLLKGKSFLGGPR-PGSEDACVY-----------AAASSVPPPLLATSPAVKGWLNTVGFFSPSMR 671
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|698827610|ref|XP_009846832.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574097669|gb|ETV63684.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 116.701 bits (291), Expect = 1.625e-29 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPD 68 R RF +QA AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD Sbjct: 47 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD 114
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1173947086|gb|OQR95495.1| (lysyl-tRNA synthetase, partial [Thraustotheca clavata]) HSP 1 Score: 122.094 bits (305), Expect = 3.980e-29 Identity = 74/189 (39.15%), Postives = 94/189 (49.74%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189 R RF++Q + AA GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKP+ PS P + T + S E +S +FL G + PS DA+VF +K G + L A W + +S F +R W Sbjct: 349 RERFVEQMSQAAAGDDEAQPHDETFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPE-------DQIVKPSTPGVITTQNFTIESV----------------------EAKLQVSKLNFLNGSK-PSKEDAIVFERVKV------IGKDILGKYPLTQA---WLELVSLFSNELRNKW 498
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|698827608|ref|XP_009846831.1| (hypothetical protein H257_19384 [Aphanomyces astaci] >gi|574097668|gb|ETV63683.1| hypothetical protein H257_19384 [Aphanomyces astaci]) HSP 1 Score: 117.087 bits (292), Expect = 6.385e-29 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPD 68 R RF +QA AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD Sbjct: 114 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD 181
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1072233924|gb|OEU18654.1| (Lysyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 122.094 bits (305), Expect = 6.896e-29 Identity = 80/190 (42.11%), Postives = 102/190 (53.68%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190 R FL+QA A GDDEA V D+ F ALEHALPPTGG+G GIDRL MFL++K NIKEVLLFPAMKP L A P ++ GS + T L + ++ S D + L+ L+ +SFL G PS D + + K G VSS+ + + W + LS F P +R SWE Sbjct: 424 RELFLEQAKAGAVGDDEAMVMDDSFVTALEHALPPTGGFGLGIDRLTMFLSNKANIKEVLLFPAMKPTDEQMELIAANA-PKKDSTNTNMGSTM-------TDLSIFMDLEMFSEDDLDNLNSALAGKSFLLGT-APSKADVNILDMVLKVDAG------LVSSR---ANIAAWTKLLSMFTPEMRASWE 595
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|673035402|ref|XP_008871662.1| (lysine-tRNA ligase [Aphanomyces invadans] >gi|574472882|gb|ETV99886.1| lysine-tRNA ligase [Aphanomyces invadans]) HSP 1 Score: 122.094 bits (305), Expect = 9.052e-29 Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSL 87 R RF +QA AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD +A A+ S SL Sbjct: 512 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPDEQVAKVAHTSAATSTDFSL 598
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1173936003|gb|OQR87036.1| (lysyl-tRNA synthetase [Achlya hypogyna]) HSP 1 Score: 119.783 bits (299), Expect = 5.453e-28 Identity = 75/189 (39.68%), Postives = 98/189 (51.85%), Query Frame = 0 Query: 1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189 R RF++Q AA GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD + PTSG++ + S++ ++ + T +FL G + PS DAVVF +K G ++ L A W +S F +R W Sbjct: 503 RERFVEQMGQAAAGDDEAQPHDESFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD--------------EQVAKPTSGAITAANF---------------SLEAVEAKLQSAQT-NFLNGAK-PSKEDAVVFERVKV------IGKDILAKFPLTQA---WLDLVSLFTNELRNKW 651 The following BLAST results are available for this feature:
BLAST of EWM21656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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