rna9048, rna9048 (mRNA) Nannochloropsis gaditana

Overview
Namerna9048
Unique Namerna9048
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1163
Alignment locationKK037251.1:198655..199537 -

Link to JBrowse

Properties
Property NameValue
Productlysyl-trna synthetase
Orig transcript idgnl|cribi|Naga_101432g2.8358.mrna
Orig protein idgnl|cribi|Naga_101432g2.8358
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:198655..199537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101432g2gene8775Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21656.1cds9018Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9048rna9048-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9048 ID=rna9048|Name=rna9048|organism=Nannochloropsis gaditana|type=mRNA|length=1163bp
ATGTTTTCCGCCCGGGCCCCTCACATATTGCCCGTCCTCCCACAGGAAAG
CACGCCGACACCAAGCACCACGCCGTCCTCTTCCAACCGGGAGGAACCCT
CTGCTCGGACAAGCCCAGGCCGCAAGCTCAAAATCCACGACCCCCACGTG
GAAGTCATCGTGGTGGACGGGGGGAGCACGGACGGCTCGGAACGAGTGGC
CCGTGCCTTGGGTGCCCGCGTCATTCGCGCCCCCACGGCCGGTCGCGCCC
GGCAAATGAACCTGGGCGCCGCCGCTGCCAATGGAGACATCCTCTTGTTC
CTCCACGCCGACACCCTCCTGCCCCCTACGTGGGAGGATGAGGTGAAAGG
CGCCTTCGCCCACCACCCTTCCCTCCTGGCCACGGCGTTCCGCCTCCGCA
TCATGGCACCCTCCTCGCTCTTTCGGGTGATTGAAGCCGGCGTGAGCGCG
CGCAGTCGATGGCCCTGGTCGATGCCGTACGGGGACCAGGCCTTGGCCGT
GCGCCGGTCGGTCTTCGAGGCGGTGGGTGGATACCCGGATGTTCCCGTCA
TGGAGGACTTCTCCTTCATCCAGGCCCTGCACAAAATGGCGCGAACGCCC
CCAACCTCCCGCCCAGGCGGTCGCGACAGGCAAGAGCGGAAGGGTGGGCG
GGTGGCAAGGCAAGAAGGGGGGCGGAGAGAGGAAACGACGGAGGCAGGGG
GCCTCTACGGCGGGAAGATCCGGCTCCTGCCCTCCGCGGTTCGGACATCG
GCAAGGCGATGGGAGAGGCTGGGCGTGGTGCGAACCACCCTGGTGAACCA
GTGCATGGTTTTGGGGTGGTATGTGAAGGTGGATCCGAATAAGTTGGCGG
TGTTTTACCGACAGGCAAGGGCGGGAGGGACGGGAGGAGGGAGGGAGAGA
GGGGTGGAGAAGCGTTTGGTCAGCTTGAGGGGATTGTGGAGACGAGGGGG
GGAGGAGGGGGCAGGGAGGGAAAGAGGGAATGAAGGGAGGGAGGGAGGAC
AGGCAGAGGGACCAGGCAAGGCTCCAGCGCCTCCAGTTTCGATAAGGATG
GGGGTGTAAGTAGGATGCAGAACGAAGGACGCGCGAGCCTCTGTACGATG
CAATGAAAGACATAAAGTGACTTGGCACGCAGACGATACATCGCTTCGTC
AAGGTCACTCGCG
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protein sequence of rna9048

>rna9048-protein ID=rna9048-protein|Name=rna9048|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFL
ADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVP
ATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKK
GMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE
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mRNA from alignment at KK037251.1:198655..199537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9048 ID=rna9048|Name=rna9048|organism=Nannochloropsis gaditana|type=mRNA|length=883bp|location=Sequence derived from alignment at KK037251.1:198655..199537- (Nannochloropsis gaditana)
CGCGCCCGGTTCCTCCAACAAGCCGCGGGCGCTGCCGAAGGAGACGACGA
AGCCCAAGTGCATGACGAAGAATTTTGTGTCGCCCTCGAGCACGCCTTGC
CTCCTACGGGCGGCTGGGGCTGTGGTATCGACCGCTTGGCCATGTTCTTG
GCGGACAAGCACAACATCAAGGAGGTTCTGCTCTTCCCTGCCATGAAACC
CGACCTCGGGCCCACCACGCTCGCCCCGCCCAAGGCCTCGCCCTCCGCCC
CGACCTCCCTCCCCACCTCCGGTTCCCTTGTCTTCTCCGCCGTCGTTCCC
GCCACCACCCTCCCGCCGTGGGCGGGCACGGACGTGGGATCTGTGGACGG
CATGCAAGAGCTGTCCCGACACTTGAGTACGCAAAGCTTCTTGGGGGGGA
AAGAGGGGCCGTCGGCGTTGGACGCAGTGGTCTTTGGGGCCATGAAGAAA
GGCATGGAGGGAGGGCGGGCGGGAGGGCAAAGTGTGAGCTCTCAGGACCT
GCCCTCGGCCGTCCGTCGGTGGTACCAGACCCTCTCACAATTCGTGCCCG
CGGTGAGGGAAAGCTGGGAGTGAGAAAGGGAGGGAGGGTGGTAGGGAGGG
TAGAGGAGGAATGTGTCGAGGAGAATCGCCGCCTTCTGCGCGCATCGTCG
ACCGTCGATGTGGAAAGGGGGAGGGTGGAAAAAGCTTCCGGGGTGTGGGG
GGGGGGGGGAAGAACGCAAGGCGGGGGACGGATAAGAGGTAAGAGGTAGC
TGTATGGGGGCACAAGGAGGTTAAGCATGAAAATGTGTGCAGCAGGGCAG
ACATCCAGGCCTTGATCGGCCTCTACCATGGCATTAATCGATACATGGAG
CGAAAAGAATTTGTGGATGTCAGGCGACGGACA
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Coding sequence (CDS) from alignment at KK037251.1:198655..199537-

>rna9048 ID=rna9048|Name=rna9048|organism=Nannochloropsis gaditana|type=CDS|length=573bp|location=Sequence derived from alignment at KK037251.1:198655..199537- (Nannochloropsis gaditana)
CGCGCCCGGTTCCTCCAACAAGCCGCGGGCGCTGCCGAAGGAGACGACGA
AGCCCAAGTGCATGACGAAGAATTTTGTGTCGCCCTCGAGCACGCCTTGC
CTCCTACGGGCGGCTGGGGCTGTGGTATCGACCGCTTGGCCATGTTCTTG
GCGGACAAGCACAACATCAAGGAGGTTCTGCTCTTCCCTGCCATGAAACC
CGACCTCGGGCCCACCACGCTCGCCCCGCCCAAGGCCTCGCCCTCCGCCC
CGACCTCCCTCCCCACCTCCGGTTCCCTTGTCTTCTCCGCCGTCGTTCCC
GCCACCACCCTCCCGCCGTGGGCGGGCACGGACGTGGGATCTGTGGACGG
CATGCAAGAGCTGTCCCGACACTTGAGTACGCAAAGCTTCTTGGGGGGGA
AAGAGGGGCCGTCGGCGTTGGACGCAGTGGTCTTTGGGGCCATGAAGAAA
GGCATGGAGGGAGGGCGGGCGGGAGGGCAAAGTGTGAGCTCTCAGGACCT
GCCCTCGGCCGTCCGTCGGTGGTACCAGACCCTCTCACAATTCGTGCCCG
CGGTGAGGGAAAGCTGGGAGTGA
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Synonyms
Publications