EWM21656.1, cds9018 (CDS) Nannochloropsis gaditana

Overview
NameEWM21656.1
Unique Namecds9018
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:198965..199537 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21656.1
Productlysyl-trna synthetase
Partialtrue
Orig transcript idgnl|cribi|Naga_101432g2.8358.mrna
GbkeyCDS
End range.
End range199537
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:198965..199537 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR006195aa-tRNA-synth_II
IPR018150aa-tRNA-synt_II-like
IPR004046GST_C
IPR010987Glutathione-S-Trfase_C-like
IPR004364aa-tRNA-synt_II
Homology
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|585101913|gb|EWM21656.1| (lysyl-trna synthetase, partial [Nannochloropsis gaditana])

HSP 1 Score: 384.415 bits (986), Expect = 4.354e-135
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190
            RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE
Sbjct:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|635358901|emb|CCI11409.1| (unnamed protein product [Albugo candida] >gi|635370255|emb|CCI41553.1| unnamed protein product [Albugo candida])

HSP 1 Score: 133.65 bits (335), Expect = 7.595e-33
Identity = 82/191 (42.93%), Postives = 104/191 (54.45%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPS--AVRRWYQTLSQFVPAVRESW 189
            R RF++Q   AA GDDEAQ HDE FC A+E+ LPPTGGWGCGIDRLAMFL++K NIKEVLLFPAMKPD               P++  +SG    S  V AT          GSVD +  L R L++ +F+ G E PS  D   F  +           Q + ++ L     VR+W Q +  F   +R +W
Sbjct:  518 RERFIEQTRQAAAGDDEAQPHDEAFCTAMEYGLPPTGGWGCGIDRLAMFLSNKFNIKEVLLFPAMKPD-------------EQPSTNESSGE---SVCVSAT----------GSVD-LDALERSLTSSAFING-ESPSKADIRSFELV-----------QVIENERLSKYPNVRKWVQYVGAFPREIRAAW 669          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|325188444|emb|CCA22980.1| (lysyltRNA synthetase putative [Albugo laibachii Nc14])

HSP 1 Score: 132.494 bits (332), Expect = 1.639e-32
Identity = 82/189 (43.39%), Postives = 102/189 (53.97%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189
            R RF++Q   AA+GDDEAQ HDE FC A+E+ LPPTGGWGCGIDRLAMFL++K NIKEVLLFPAMKPD  P+                + GS     V P+           GSVD ++ L   L+  +F+ G E PS  DA  F  +K           +V     P+ VR+W Q +  F   VR  W
Sbjct:  518 RERFIEQTRQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGIDRLAMFLSNKFNIKEVLLFPAMKPDDQPSV---------------SEGSGESVGVSPS-----------GSVD-VEALEMSLTRGAFVNG-EAPSKADARAFDQVKV--------MDNVVLGKYPN-VRKWVQYVGAFSAEVRSKW 669          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|299472298|emb|CBN79710.1| (Lysyl-tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 125.176 bits (313), Expect = 8.684e-30
Identity = 81/196 (41.33%), Postives = 107/196 (54.59%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGT--------DVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPS--AVRRWYQTLSQFVPAVR 186
            R RFL Q+  +  GDDEAQVHDEEFC A+E+ LPPT GWG G+DRL MFL+DK+NIKEVLLFPAMKP+      A  +++       P + +    A   A + PP   +        D+ S  G+Q+L   L  +SFLGG   P + DA V+           A   SV    L +  AV+ W  T+  F P++R
Sbjct:  492 RQRFLDQSKASVAGDDEAQVHDEEFCTAMEYGLPPTAGWGVGVDRLTMFLSDKNNIKEVLLFPAMKPE----ETAAQQSTSRGIGMAPAAAAAAAPAAKAAVSYPPLFASGSSLLKDVDLASTTGIQKLEGLLKGKSFLGGPR-PGSEDACVY-----------AAASSVPPPLLATSPAVKGWLNTVGFFSPSMR 671          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|698827610|ref|XP_009846832.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574097669|gb|ETV63684.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 116.701 bits (291), Expect = 1.625e-29
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPD 68
            R RF +QA  AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD
Sbjct:   47 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD 114          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1173947086|gb|OQR95495.1| (lysyl-tRNA synthetase, partial [Thraustotheca clavata])

HSP 1 Score: 122.094 bits (305), Expect = 3.980e-29
Identity = 74/189 (39.15%), Postives = 94/189 (49.74%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189
            R RF++Q + AA GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKP+            PS P  + T    + S                       E    +S  +FL G + PS  DA+VF  +K        G   +    L  A   W + +S F   +R  W
Sbjct:  349 RERFVEQMSQAAAGDDEAQPHDETFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPE-------DQIVKPSTPGVITTQNFTIESV----------------------EAKLQVSKLNFLNGSK-PSKEDAIVFERVKV------IGKDILGKYPLTQA---WLELVSLFSNELRNKW 498          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|698827608|ref|XP_009846831.1| (hypothetical protein H257_19384 [Aphanomyces astaci] >gi|574097668|gb|ETV63683.1| hypothetical protein H257_19384 [Aphanomyces astaci])

HSP 1 Score: 117.087 bits (292), Expect = 6.385e-29
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPD 68
            R RF +QA  AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD
Sbjct:  114 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD 181          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1072233924|gb|OEU18654.1| (Lysyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.094 bits (305), Expect = 6.896e-29
Identity = 80/190 (42.11%), Postives = 102/190 (53.68%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESWE 190
            R  FL+QA   A GDDEA V D+ F  ALEHALPPTGG+G GIDRL MFL++K NIKEVLLFPAMKP      L    A P   ++    GS +       T L  +   ++ S D +  L+  L+ +SFL G   PS  D  +   + K   G       VSS+   + +  W + LS F P +R SWE
Sbjct:  424 RELFLEQAKAGAVGDDEAMVMDDSFVTALEHALPPTGGFGLGIDRLTMFLSNKANIKEVLLFPAMKPTDEQMELIAANA-PKKDSTNTNMGSTM-------TDLSIFMDLEMFSEDDLDNLNSALAGKSFLLGT-APSKADVNILDMVLKVDAG------LVSSR---ANIAAWTKLLSMFTPEMRASWE 595          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|673035402|ref|XP_008871662.1| (lysine-tRNA ligase [Aphanomyces invadans] >gi|574472882|gb|ETV99886.1| lysine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 122.094 bits (305), Expect = 9.052e-29
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSL 87
            R RF +QA  AA+GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD     +A   A+ S   SL
Sbjct:  512 RERFTEQAKQAADGDDEAQPHDEAFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPDEQVAKVAHTSAATSTDFSL 598          
BLAST of EWM21656.1 vs. NCBI_GenBank
Match: gi|1173936003|gb|OQR87036.1| (lysyl-tRNA synthetase [Achlya hypogyna])

HSP 1 Score: 119.783 bits (299), Expect = 5.453e-28
Identity = 75/189 (39.68%), Postives = 98/189 (51.85%), Query Frame = 0
Query:    1 RARFLQQAAGAAEGDDEAQVHDEEFCVALEHALPPTGGWGCGIDRLAMFLADKHNIKEVLLFPAMKPDLGPTTLAPPKASPSAPTSLPTSGSLVFSAVVPATTLPPWAGTDVGSVDGMQELSRHLSTQSFLGGKEGPSALDAVVFGAMKKGMEGGRAGGQSVSSQDLPSAVRRWYQTLSQFVPAVRESW 189
            R RF++Q   AA GDDEAQ HDE FC A+E+ LPPTGGWGCG+DR+AMFL +K NIKEVLLFPAMKPD                 + PTSG++  +                 S++ ++   +   T +FL G + PS  DAVVF  +K        G   ++   L  A   W   +S F   +R  W
Sbjct:  503 RERFVEQMGQAAAGDDEAQPHDESFCTAMEYGLPPTGGWGCGVDRIAMFLTNKFNIKEVLLFPAMKPD--------------EQVAKPTSGAITAANF---------------SLEAVEAKLQSAQT-NFLNGAK-PSKEDAVVFERVKV------IGKDILAKFPLTQA---WLDLVSLFTNELRNKW 651          
The following BLAST results are available for this feature:
BLAST of EWM21656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101913|gb|EWM21656.1|4.354e-135100.00lysyl-trna synthetase, partial [Nannochloropsis ga... [more]
gi|635358901|emb|CCI11409.1|7.595e-3342.93unnamed protein product [Albugo candida] >gi|63537... [more]
gi|325188444|emb|CCA22980.1|1.639e-3243.39lysyltRNA synthetase putative [Albugo laibachii Nc... [more]
gi|299472298|emb|CBN79710.1|8.684e-3041.33Lysyl-tRNA ligase [Ectocarpus siliculosus][more]
gi|698827610|ref|XP_009846832.1|1.625e-2975.00hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|1173947086|gb|OQR95495.1|3.980e-2939.15lysyl-tRNA synthetase, partial [Thraustotheca clav... [more]
gi|698827608|ref|XP_009846831.1|6.385e-2975.00hypothetical protein H257_19384 [Aphanomyces astac... [more]
gi|1072233924|gb|OEU18654.1|6.896e-2942.11Lysyl-tRNA synthetase [Fragilariopsis cylindrus CC... [more]
gi|673035402|ref|XP_008871662.1|9.052e-2964.37lysine-tRNA ligase [Aphanomyces invadans] >gi|5744... [more]
gi|1173936003|gb|OQR87036.1|5.453e-2839.68lysyl-tRNA synthetase [Achlya hypogyna][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9048rna9048Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications