EWM21672.1, cds9002 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21672.1
Unique Name	cds9002
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037251.1:160360..160587 -
Alignment location	KK037251.1:159886..160002 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21672.1
Product	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Orig transcript id	gnl\|cribi\|Naga_100863g2.3404.mrna
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:160360..160587 -
KK037251.1	supercontig	KK037251.1:159886..160002 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Tim17/Tim22/Tim23/PMP24

Homology

[Close]

BLAST of EWM21672.1 vs. NCBI_GenBank
Match: gi|585101939|gb|EWM21671.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 228.409 bits (581), Expect = 1.704e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query:    1 MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA 114
            MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA
Sbjct:   16 MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA 129

[Close]

BLAST of EWM21672.1 vs. NCBI_GenBank
Match: gi|585101940|gb|EWM21672.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 227.639 bits (579), Expect = 1.904e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query:    1 MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA 114
            MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA
Sbjct:    1 MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKFA 114

The following BLAST results are available for this feature:

BLAST of EWM21672.1 vs. NCBI_GenBank

BLAST of EWM21672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585101939\|gb\|EWM21671.1\|	1.704e-75	100.00	Mitochondrial inner membrane translocase subunit T...	[more]
gi\|585101940\|gb\|EWM21672.1\|	1.904e-75	100.00	Mitochondrial inner membrane translocase subunit T...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9032	rna9032	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications