rna9016, rna9016 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9016
Unique Name	rna9016
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	592
Alignment location	KK037251.1:112706..113490 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101740g1.3008.mrna
Orig protein id	gnl\|cribi\|Naga_101740g1.3008
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:112706..113490 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101740g1	gene8742	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9016	rna9016-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21687.1	cds8986	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:112706..113490-
coding sequence from alignment at KK037251.1:112706..113490-

mRNA sequence

>rna9016 ID=rna9016|Name=rna9016|organism=Nannochloropsis gaditana|type=mRNA|length=592bp
TCCCTCCCTCCCCCTGCATGGCGAGGAGACAGACGGGGAGAAGGGAGGGG
TAAGGAGGGAGGGAGGGAGGGAGGGTGAGGCCCGCGGACGGGATGACGAC
GTGGCAAGGGGCAGAGAGTGAGAAGGCCAAGGCGGTAGGCCGGAGAAGCT
GGACACGATAAAGGTGACGCAGGAAGTGGAAGGGGTTGGGAGAGACTGAC
ACCAGGATCGGTACAGGGGCACAGAAAGAGGAAAGGGGGTCGGAGGGATT
GGCACCAGGATGGCGACGGGCGATGGTGCGGTGTGTAGTCGTCCGGGCTC
CCGGCCTCTCTGTGTTGTGGAAGCGACTGCCAGAAGCGGCCCCATTGCTC
GCGGCTCCCGTCCTTTTTTGTTTTAATAATTCGAAGGGAATGTACCCTGA
CATTGTCCGGCAGCCGTCGCCTGCGTTTCTGGAAACCGGAGTTTTTCCAG
GGGAAAAAGCGACGGAAGGAGGCACCCAAGCAACAAGCGAGGGCTTGGAG
GAGGGATGGCGGGAGGGCGGGCGCGTCGGTGTAAAGCATAAGAGGTGCGA
GGATAACAAGGAATACGGTTCATGAAGCTAAGCGTGTCCCCT

protein sequence of rna9016

>rna9016-protein ID=rna9016-protein|Name=rna9016|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MLYYNQKYPEALEQLDRAIDRYETLYEQVATEERVWRAAVLSRYHGRETG
LAKIRSSPPSPYGTETRRLMGAVLDLFEGRVEEEEVLAMVEEARSNPYGN
YDLYGFFYIGLYRDACGLAGPARAAMEQATRALRARQDDVMYHFPRLHLL
WRT

mRNA from alignment at KK037251.1:112706..113490-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9016 ID=rna9016|Name=rna9016|organism=Nannochloropsis gaditana|type=mRNA|length=785bp|location=Sequence derived from alignment at KK037251.1:112706..113490- (Nannochloropsis gaditana)
ATGCTCTACTACAACCAAAAATACCCGGAGGCCCTTGAGCAGTTGGACCG
GTAGGCGCCTCCCCTCTTTCCCTCCCTCCCTCCCGCCCTCTTTCCCACCC
TCCTGCCCTGAGGAAGAAAGCTTGCCTTGGCCTCCTTGCTGCCCCGTGGT
CCTCTTGCGCGCCCTCCGTCCATCACCCGCCCTCTCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTTCCCTTTCTCGTCCAGGGCCATCGACCGCTACGAGA
CTCTCTACGAGCAAGTAGCCACCGAAGAGCGGGTTTGGCGCGCGGCCGTT
CTCAGCCGGTACCACGGGCGGGAAACGGGCTTGGCGAAGATCCGATCTTC
TCCCCCTTCCCCCTATGGAACAGAGACGCGTCGACTCATGGGCGCGGTCC
TCGACCTTTTTGAGGGGAGAGTGGAGGAGGAGGAGGTGCTGGCGATGGTG
GAGGAGGCACGGGTACGACGAGAGGGAGGGAAAGGGCAGGAAGGGGACGA
GGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGGATGTCCTCACGGCCCCGC
CTTCCCTCGCACCCTCCTGACTCGTTCCCTGACCTCTTTTCCCCCCTCGA
TTCAGTCGAACCCCTACGGGAACTACGACCTCTACGGTTTCTTCTACATC
GGTCTCTATCGGGACGCCTGTGGACTGGCGGGACCGGCCCGGGCGGCGAT
GGAGCAAGCTACCAGGGCCCTCCGCGCCCGCCAGGATGACGTCATGTACC
ATTTCCCTCGCTTGCATCTGCTCTGGAGAACGTAA

Coding sequence (CDS) from alignment at KK037251.1:112706..113490-

>rna9016 ID=rna9016|Name=rna9016|organism=Nannochloropsis gaditana|type=CDS|length=1386bp|location=Sequence derived from alignment at KK037251.1:112706..113490- (Nannochloropsis gaditana)
TCGAACCCCTACGGGAACTACGACCTCTACGGTTTCTTCTACATCGGTCT
CTATCGGGACGCCTGTGGACTGGCGGGACCGGCCCGGGCGGCGATGGAGC
AAGCTACCAGGGCCCTCCGCGCCCGCCAGGATGACGTCATGTACCATTTC
CCTCGCTTGCATCTGCTCTGGAGAACGTAAGGCCATCGACCGCTACGAGA
CTCTCTACGAGCAAGTAGCCACCGAAGAGCGGGTTTGGCGCGCGGCCGTT
CTCAGCCGGTACCACGGGCGGGAAACGGGCTTGGCGAAGATCCGATCTTC
TCCCCCTTCCCCCTATGGAACAGAGACGCGTCGACTCATGGGCGCGGTCC
TCGACCTTTTTGAGGGGAGAGTGGAGGAGGAGGAGGTGCTGGCGATGGTG
GAGGAGGCACGGATGCTCTACTACAACCAAAAATACCCGGAGGCCCTTGA
GCAGTTGGACCGTCGAACCCCTACGGGAACTACGACCTCTACGGTTTCTT
CTACATCGGTCTCTATCGGGACGCCTGTGGACTGGCGGGACCGGCCCGGG
CGGCGATGGAGCAAGCTACCAGGGCCCTCCGCGCCCGCCAGGATGACGTC
ATGTACCATTTCCCTCGCTTGCATCTGCTCTGGAGAACGTAAGGCCATCG
ACCGCTACGAGACTCTCTACGAGCAAGTAGCCACCGAAGAGCGGGTTTGG
CGCGCGGCCGTTCTCAGCCGGTACCACGGGCGGGAAACGGGCTTGGCGAA
GATCCGATCTTCTCCCCCTTCCCCCTATGGAACAGAGACGCGTCGACTCA
TGGGCGCGGTCCTCGACCTTTTTGAGGGGAGAGTGGAGGAGGAGGAGGTG
CTGGCGATGGTGGAGGAGGCACGGATGCTCTACTACAACCAAAAATACCC
GGAGGCCCTTGAGCAGTTGGACCGTCGAACCCCTACGGGAACTACGACCT
CTACGGTTTCTTCTACATCGGTCTCTATCGGGACGCCTGTGGACTGGCGG
GACCGGCCCGGGCGGCGATGGAGCAAGCTACCAGGGCCCTCCGCGCCCGC
CAGGATGACGTCATGTACCATTTCCCTCGCTTGCATCTGCTCTGGAGAAC
GTAAGGCCATCGACCGCTACGAGACTCTCTACGAGCAAGTAGCCACCGAA
GAGCGGGTTTGGCGCGCGGCCGTTCTCAGCCGGTACCACGGGCGGGAAAC
GGGCTTGGCGAAGATCCGATCTTCTCCCCCTTCCCCCTATGGAACAGAGA
CGCGTCGACTCATGGGCGCGGTCCTCGACCTTTTTGAGGGGAGAGTGGAG
GAGGAGGAGGTGCTGGCGATGGTGGAGGAGGCACGGATGCTCTACTACAA
CCAAAAATACCCGGAGGCCCTTGAGCAGTTGGACCG

Synonyms

Publications