rna9008, rna9008 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9008
Unique Name	rna9008
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	312
Alignment location	KK037251.1:95651..98836 +

Link to JBrowse

Properties


Property Name	Value
Product	phytanoyl- dioxygenase
Orig transcript id	gnl\|cribi\|Naga_100723g2.5247.mrna
Orig protein id	gnl\|cribi\|Naga_100723g2.5247
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:95651..98836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100723g2	gene8734	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9008	rna9008-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21695.1	cds8978	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:95651..98836+
coding sequence from alignment at KK037251.1:95651..98836+

mRNA sequence

>rna9008 ID=rna9008|Name=rna9008|organism=Nannochloropsis gaditana|type=mRNA|length=312bp
ATGACTGTCTTGACACGCAGAGCTGCGATTGACTGGCGCTTTGTTGAAAA
CTTGCCTTGGTCCTCCGCCCCGCAAAAGCACCACGCCCACAGCCGGCAAC
TTCCAAGCACGTCGTCGGTGCTTGTCCGTCCCTTTTTTTTTCGCTTCGGA
CGGGCCGATCTGATATGCGTTGCCACCAACATCCTCAATTTACACACGCC
CGCGTCAAGAGGAGACATGAAAGGGAGCCAGGAACCCCCCGCCGGCATTC
CGCGTGGTTCATTTCAGCCCGTTTGTGTGTCGCAGTCCTATTTTTCGTAC
TGTGCAATGTAG

protein sequence of rna9008

>rna9008-protein ID=rna9008-protein|Name=rna9008|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MKDLEELPLIPSRDDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEE
ECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYY
PSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAW
HQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRP
LLAGRDGG

mRNA from alignment at KK037251.1:95651..98836+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9008 ID=rna9008|Name=rna9008|organism=Nannochloropsis gaditana|type=mRNA|length=3186bp|location=Sequence derived from alignment at KK037251.1:95651..98836+ (Nannochloropsis gaditana)
GGTTGAGCTTGAGGCAAGGCGTCAGCTTTCGTCCCAGGTGGCACGGCACA
GGTTTAATGATATATAACACGGAGATTCAGTCGGGGGTCAGAATGAGCGT
TTGGGCATCCCCCAGGCCCATGGCCCATGTcagtgaaggagaagatcgga
acggagCTTCGCTTGACGGCCAGACCCGCCTTGGGCATATAAGGGCACAG
GCGCGCGTGCTTCTCGTGGAAGTCAGTGGTCATTGAAATGATTTGCTGTG
TGTATGTGTGAGCGTAGGAGTATAGGGTATACGTAAATAAGAGGGTTTGT
TGGTCGAGAACAAGAGACGCCATCCTCATGTTATGCAAAACGATAATTGA
TGAGGGCAGCGACATAGAACAAATTTAACACGAAATCTGCGGCGACAGAA
CTTAACGTACGTTCACATAGACAATTGAAGTCGTAGGAGAATAAAGCGGA
TTTCCATGAAAGACTTGGAGGAATTGCCTTTGATCCCATCCAGAGATGAT
GGCGCGGCTCGACGACAGGTATTTGACATATAAGAAAGGGAACCCACTGC
ACTTTTTGGGAAATTTGAGTGTACAATGCCAGTAAAGACGTATAATAAGC
GTGTGTATATCTATTTTGATTCGAAGGAGTATTTGTCGCTCTTTTTTGTG
GGAGCCTCACGTGTGCACAACCTCATCCGAACCTATGCTTTTAGGGTAAG
ACGTACAAGATCACCACTGAAGACAAGGATGCTTTCTTGACCAACGGCTA
CATCCGCCTACCCGGTGTGCttacggaggaggaatgcgCGAAGCTTGAGC
AGGTCTTTGATGCTTTCATGGAAGGGAAAGTGCAGGTGCCCGGGAAGGAT
TTTTGTGACATGAGCCAaagggtaagggagggatgcgTATTTGTCGCCAT
TAAGCCATTATACGTCCCTAATACGTTAAAATGTCATGAATGTAATGATC
CATCCATGATCCATGCATTCAATTGCCATCAGTCCCATCCTCGTTCCCTA
TGGTACTTTCGATATACCCGTTACCTGCCCAACCCTACCGTCCCTGCATG
TCCTCCATCGTCCTGCACCCACGGTCGCTCCCATTTCCTTCTCAACCTCG
CCCGTCCCAACGTCAGTTCGGCGTTCCCTTCGAAGCTTGGCGCTTGGTCA
ACGCCATGCTGCCCCGCGAGTACTATCCGTCGTTACAAGAGGACAACGTG
CTGGAGGCTCGAGCACATTCCATCGCCCAACAGCTTTTGGGCGACGACAT
GGCCTTAGATTACGATCAATTCCTGATGAAACGGCCAAGCAGGTAAAGGC
CCCGTCCCTGGTtaagaggaggacggacttgagggagggaaaggaaggga
gatgggagggcggggaccgaAAAGGGATAGAGAGGCAAGCATCGAGAGAG
TGTGGCGCTATTCCCGAGATCATCTTTAATGGTACCATTGTGAATAGGGA
CGGAGAAGCGAACGGCGCGGTCTTCGCCTGGCACCAAGATCAGGTGAGGG
AAAAATTTCGAGGGGGCTCAGCGAAGAGCGCGGGTGACCTGACGCAACTT
GACTCGCACGTGCATGTGTGCTCAGACAGCCCCAGAACGCATTGCTTGAT
TTTTAATCGCGGTGGACAGTGTCTGACTGACTCGtgttctcccctccccc
ttccaaggCCTACTGGCCACAGCAAACGCCGGATTTCCGAACCGTGACCG
TATCCTTGGCCCTGAACGAAGCGAGCAGGGAGAACGGGTGCTTGCGCGTG
GTGCCCGGGTCGCACAGGGAAAAGAAACTCCGAGCCCATCGGCCTTTGCT
GGCGGGGAGAGATGGtgggtaagggaggaaggggggtcgGAACACAGTGG
CTGCGGATGGGGTGTGTGGTCTAGGTACGCGCAGGGAGTCTCAAGGCTTA
TGGCTTATGTTGGTCACCAATACTGAACCACTATACATTATGACTACTGT
TGACGACAAATTACTGTGCATTCTGGCTGGTATTGCACGACAAATACTGA
AACACGCTGCACAGACGCCCACGCTCTGACGGTGGATCTAGTGGAAGGTG
AGAAGAAGGGACTAGGGGCGAAGACCGCATTTTGTCTGTTCTCAATCGAT
ATGCGGGGAAATGAATCATGGCTTAAGCCATGCCGTCGATTCTTATGCCT
tgttgcttcttcctccatcgctcaCGCGGCGCCGAAGCTCTCGACTGTAG
ACAGATTGCCCGAGTGCCTGACCCTTTTCCCACCACACGGTAGGAGACAG
AGTCCTGTACCTCCCCTTGCGGACGGGCGACGTCACGGTCCACGACGAGC
GTATCGTCCATGGTTCCGGTGAGTCACCTTGGCGTGCAcatctttctccc
cttccacgcaAAAAAAAGGCTCCACTCATCTTATCTCTGGTTTCATAcca
tcccccctttctgCGTTTCCAATCTCGTCAAATGCTTCAAATCTTTTAAA
ACATACGATGAGTGTAGACGGCAACACTTCCACGGTCCATCCCCGAAAGA
CATACGTCATAGCCTTTCGCTCTCAGGTAGGACCGGGTGCAATGCAGATC
CTGTTGTGCAAACACGTCCATTTCTTCCGCCCAAAATTTATGTGACCGTC
AAGGACCTGTGACTTCTTTCAATTTTCTGTGCATGCAATGTACTATTTTT
GGATGCTTGCCTACCTCTTGTTGTGGAAAGAGTATTCGCATCCGACGCGG
GTATTTTGACAGCACAAAACCTTAGCTCCATTCAAAAGATGTGTAATGTG
ATGATATTGATCCTTTTGATGCGCACTTTTCAGGCAACCATCGCGACTGA
ACGTGCCATGGGCTTCACACACTCCCACAATACCGAAACAAACTGGGACA
GTTGGATAAGTTCGTCCTCAGCATGATGAGCGGGGATTGATTTGAAAAGA
TAAACACGTTTAAAGGAATGTACGCGGAGGTTGCCGTGCACTATAGATGC
AGCGAACGACAAATTCTGAAAGGACGACCGCAATATATACAATAGCttgg
tcgggagggaggagagcgtggagagagggtgggTTATTTTTGCAACGCAA
AGTCAGTACCTTCGAGACGTCAGAATGCTCCATGAATGACAGAGAAAAAT
AAAGCCGTTTTTTGTGAAGATCGATCAAGTCTCGACTCAAAAACAAAGAA
AGATTTCCACGAGGCCACGAAGCGTCGGTGCACAAT

Coding sequence (CDS) from alignment at KK037251.1:95651..98836+

>rna9008 ID=rna9008|Name=rna9008|organism=Nannochloropsis gaditana|type=CDS|length=3135bp|location=Sequence derived from alignment at KK037251.1:95651..98836+ (Nannochloropsis gaditana)
ATGAAAGACTTGGAGGAATTGCCTTTGATCCCATCCAGAGATGATGGCGC
GGCTCGACGACAGGGTAAGACGTACAAGATCACCACTGAAGACAAGGATG
CTTTCTTGACCAACGGCTACATCCGCCTACCCGGTGTGCttacggaggag
gaatgcgCGAAGCTTGAGCAGGTCTTTGATGCTTTCATGGAAGGGAAAGT
GCAGGTGCCCGGGAAGGATTTTTGTGACATGAGCCAaaggTTCGGCGTTC
CCTTCGAAGCTTGGCGCTTGGTCAACGCCATGCTGCCCCGCGAGTACTAT
CCGTCGTTACAAGAGGACAACGTGCTGGAGGCTCGAGCACATTCCATCGC
CCAACAGCTTTTGGGCGACGACATGGCCTTAGATTACGATCAATTCCTGA
TGAAACGGCCAAGCAGGGACGGAGAAGCGAACGGCGCGGTCTTCGCCTGG
CACCAAGATCAGgCCTACTGGCCACAGCAAACGCCGGATTTCCGAACCGT
GACCGTATCCTTGGCCCTGAACGAAGCGAGCAGGGAGAACGGGTGCTTGC
GCGTGGTGCCCGGGTCGCACAGGGAAAAGAAACTCCGAGCCCATCGGCCT
TTGCTGGCGGGGAGAGATGGtgggtaaATGAAAGACTTGGAGGAATTGCC
TTTGATCCCATCCAGAGATGATGGCGCGGCTCGACGACAGGGTAAGACGT
ACAAGATCACCACTGAAGACAAGGATGCTTTCTTGACCAACGGCTACATC
CGCCTACCCGGTGTGCttacggaggaggaatgcgCGAAGCTTGAGCAGGT
CTTTGATGCTTTCATGGAAGGGAAAGTGCAGGTGCCCGGGAAGGATTTTT
GTGACATGAGCCAaaggTTCGGCGTTCCCTTCGAAGCTTGGCGCTTGGTC
AACGCCATGCTGCCCCGCGAGTACTATCCGTCGTTACAAGAGGACAACGT
GCTGGAGGCTCGAGCACATTCCATCGCCCAACAGCTTTTGGGCGACGACA
TGGCCTTAGATTACGATCAATTCCTGATGAAACGGCCAAGCAGGGACGGA
GAAGCGAACGGCGCGGTCTTCGCCTGGCACCAAGATCAGgCCTACTGGCC
ACAGCAAACGCCGGATTTCCGAACCGTGACCGTATCCTTGGCCCTGAACG
AAGCGAGCAGGGAGAACGGGTGCTTGCGCGTGGTGCCCGGGTCGCACAGG
GAAAAGAAACTCCGAGCCCATCGGCCTTTGCTGGCGGGGAGAGATGGtgg
gtaaATGAAAGACTTGGAGGAATTGCCTTTGATCCCATCCAGAGATGATG
GCGCGGCTCGACGACAGGGTAAGACGTACAAGATCACCACTGAAGACAAG
GATGCTTTCTTGACCAACGGCTACATCCGCCTACCCGGTGTGCttacgga
ggaggaatgcgCGAAGCTTGAGCAGGTCTTTGATGCTTTCATGGAAGGGA
AAGTGCAGGTGCCCGGGAAGGATTTTTGTGACATGAGCCAaaggTTCGGC
GTTCCCTTCGAAGCTTGGCGCTTGGTCAACGCCATGCTGCCCCGCGAGTA
CTATCCGTCGTTACAAGAGGACAACGTGCTGGAGGCTCGAGCACATTCCA
TCGCCCAACAGCTTTTGGGCGACGACATGGCCTTAGATTACGATCAATTC
CTGATGAAACGGCCAAGCAGGGACGGAGAAGCGAACGGCGCGGTCTTCGC
CTGGCACCAAGATCAGgCCTACTGGCCACAGCAAACGCCGGATTTCCGAA
CCGTGACCGTATCCTTGGCCCTGAACGAAGCGAGCAGGGAGAACGGGTGC
TTGCGCGTGGTGCCCGGGTCGCACAGGGAAAAGAAACTCCGAGCCCATCG
GCCTTTGCTGGCGGGGAGAGATGGtgggtaaATGAAAGACTTGGAGGAAT
TGCCTTTGATCCCATCCAGAGATGATGGCGCGGCTCGACGACAGGGTAAG
ACGTACAAGATCACCACTGAAGACAAGGATGCTTTCTTGACCAACGGCTA
CATCCGCCTACCCGGTGTGCttacggaggaggaatgcgCGAAGCTTGAGC
AGGTCTTTGATGCTTTCATGGAAGGGAAAGTGCAGGTGCCCGGGAAGGAT
TTTTGTGACATGAGCCAaaggTTCGGCGTTCCCTTCGAAGCTTGGCGCTT
GGTCAACGCCATGCTGCCCCGCGAGTACTATCCGTCGTTACAAGAGGACA
ACGTGCTGGAGGCTCGAGCACATTCCATCGCCCAACAGCTTTTGGGCGAC
GACATGGCCTTAGATTACGATCAATTCCTGATGAAACGGCCAAGCAGGGA
CGGAGAAGCGAACGGCGCGGTCTTCGCCTGGCACCAAGATCAGgCCTACT
GGCCACAGCAAACGCCGGATTTCCGAACCGTGACCGTATCCTTGGCCCTG
AACGAAGCGAGCAGGGAGAACGGGTGCTTGCGCGTGGTGCCCGGGTCGCA
CAGGGAAAAGAAACTCCGAGCCCATCGGCCTTTGCTGGCGGGGAGAGATG
GtgggtaaATGAAAGACTTGGAGGAATTGCCTTTGATCCCATCCAGAGAT
GATGGCGCGGCTCGACGACAGGGTAAGACGTACAAGATCACCACTGAAGA
CAAGGATGCTTTCTTGACCAACGGCTACATCCGCCTACCCGGTGTGCtta
cggaggaggaatgcgCGAAGCTTGAGCAGGTCTTTGATGCTTTCATGGAA
GGGAAAGTGCAGGTGCCCGGGAAGGATTTTTGTGACATGAGCCAaaggTT
CGGCGTTCCCTTCGAAGCTTGGCGCTTGGTCAACGCCATGCTGCCCCGCG
AGTACTATCCGTCGTTACAAGAGGACAACGTGCTGGAGGCTCGAGCACAT
TCCATCGCCCAACAGCTTTTGGGCGACGACATGGCCTTAGATTACGATCA
ATTCCTGATGAAACGGCCAAGCAGGGACGGAGAAGCGAACGGCGCGGTCT
TCGCCTGGCACCAAGATCAGgCCTACTGGCCACAGCAAACGCCGGATTTC
CGAACCGTGACCGTATCCTTGGCCCTGAACGAAGCGAGCAGGGAGAACGG
GTGCTTGCGCGTGGTGCCCGGGTCGCACAGGGAAAAGAAACTCCGAGCCC
ATCGGCCTTTGCTGGCGGGGAGAGATGGtgggtaa

Synonyms

Publications