EWM21695.1, cds8978 (CDS) Nannochloropsis gaditana

Overview
NameEWM21695.1
Unique Namecds8978
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:96106..96168 +
Alignment locationKK037251.1:96345..96521 +
Alignment locationKK037251.1:96767..96942 +
Alignment locationKK037251.1:97098..97143 +
Alignment locationKK037251.1:97308..97472 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21695.1
Productphytanoyl- dioxygenase
Orig transcript idgnl|cribi|Naga_100723g2.5247.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:96106..96168 +
KK037251.1supercontigKK037251.1:96345..96521 +
KK037251.1supercontigKK037251.1:96767..96942 +
KK037251.1supercontigKK037251.1:97098..97143 +
KK037251.1supercontigKK037251.1:97308..97472 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Homology
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|585101985|gb|EWM21695.1| (phytanoyl- dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 434.491 bits (1116), Expect = 3.021e-154
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query:    1 MKDLEELPLIPSRDDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRDGG 208
            MKDLEELPLIPSRDDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRDGG
Sbjct:    1 MKDLEELPLIPSRDDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRDGG 208          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|930019043|ref|WP_054123333.1| (phytanoyl-CoA dioxygenase family protein [Novosphingobium sp. AAP93] >gi|929697287|gb|KPF79588.1| hypothetical protein IP83_16635 [Novosphingobium sp. AAP93])

HSP 1 Score: 192.586 bits (488), Expect = 6.726e-58
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 0
Query:   20 RQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLA 203
            RQG  Y ++ E+ + F  +GY+ L GVL+EEE A +E  F+ F+ G+V   G+DFCDMS  +G  FE + LVNA+LPR Y P ++ DN+ E RA SI++QL+G+   LDYDQFL KRP++      AVF WHQD  YWP  TP+  T T SLAL++A  ENGCLRVVPGSHR K LR HRPL+ 
Sbjct:    6 RQGDDYILSPEEIEQFHRDGYVTLRGVLSEEELAAIEPEFERFIRGEVAGMGRDFCDMSGPYGRKFEDFALVNAVLPRRYRPEIR-DNLFERRAASISRQLIGETATLDYDQFLAKRPAK----PDAVFTWHQDLGYWPTGTPEPLTATCSLALDDADSENGCLRVVPGSHR-KGLRPHRPLMG 183          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|1119408333|ref|WP_072383954.1| (phytanoyl-CoA dioxygenase family protein [Novosphingobium sp. NDB2Meth1])

HSP 1 Score: 188.734 bits (478), Expect = 2.144e-56
Identity = 97/184 (52.72%), Postives = 126/184 (68.48%), Query Frame = 0
Query:   20 RQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLA 203
            +QG  Y ++ ++ + F  +GY+ L GVL+E E A +E  FD F+ G+V   G+DFCDMS  +G  FE + LVNA+LPR Y P ++ DN+ E RA SI++QL+G+   LDYDQFL KRP++      AVF WHQD  YWP  TP+  T T SLAL++A  ENGCLRVVPGSHR K LR HRPL+ 
Sbjct:    6 QQGDDYILSPDEIEQFHRDGYVTLRGVLSEGELAAIEPEFDRFIRGEVAGMGRDFCDMSGPYGRKFEDFALVNAVLPRRYRPEIR-DNLFERRAASISRQLIGETATLDYDQFLAKRPAK----PDAVFTWHQDLGYWPTGTPEPLTATCSLALDDADSENGCLRVVPGSHR-KGLRPHRPLMG 183          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|917728215|ref|WP_052242506.1| (phytanoyl-CoA dioxygenase family protein [Novosphingobium subterraneum] >gi|741024641|gb|KHS44940.1| phytanoyl-CoA dioxygenase [Novosphingobium subterraneum])

HSP 1 Score: 184.496 bits (467), Expect = 1.203e-54
Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 0
Query:   20 RQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLA 203
            RQG  Y +T E+   F  +GYI L GV+TEEE A LE  F+ F+ G+V+  GKDFCDMS  +   FE + LVNA+LPR Y PSL+ DN+ E RA SI++QL+G+   LDYDQFL KRP++      AVF  HQD  YWP  TP+  T T SLAL++A  ENGCL+VVPGS ++  LR HRPL+ 
Sbjct:    7 RQGDDYILTPEEIAQFHRDGYITLRGVMTEEELAPLETEFERFIRGEVRGMGKDFCDMSGPYDRAFENFSLVNAVLPRHYEPSLR-DNLYERRAASISRQLIGETATLDYDQFLAKRPAK----PDAVFTMHQDLGYWPTGTPEPLTATCSLALDDADPENGCLKVVPGSQKQ-GLRPHRPLMG 184          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|1011449840|ref|WP_062346911.1| (phytanoyl-CoA dioxygenase family protein [Novosphingobium sp. CCH12-A3])

HSP 1 Score: 184.496 bits (467), Expect = 1.243e-54
Identity = 99/184 (53.80%), Postives = 124/184 (67.39%), Query Frame = 0
Query:   20 RQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLA 203
            RQG  Y +T E+   F  +GYI L GV+TEEE A LE  F+ F+ G+V   GKDFCDMS  +   FE + LVNA+LPR Y PSL+ DN+ E RA SI++QL+G+   LDYDQFL KRP++      AVF  HQD  YWP  TP+  T T SLAL++A  ENGCL+VVPGS ++  LR HRPL+ 
Sbjct:    7 RQGDDYILTPEEIAQFHRDGYITLRGVMTEEELAPLETEFERFIRGEVSGMGKDFCDMSGPYDRAFENFSLVNAVLPRHYEPSLR-DNLYERRAASISRQLIGETATLDYDQFLAKRPAK----PDAVFTMHQDLGYWPTGTPEPLTATCSLALDDADPENGCLKVVPGSQKQ-GLRPHRPLMG 184          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|148910293|gb|ABR18226.1| (unknown [Picea sitchensis])

HSP 1 Score: 182.956 bits (463), Expect = 4.025e-54
Identity = 93/192 (48.44%), Postives = 122/192 (63.54%), Query Frame = 0
Query:   17 AARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRDGG 208
            A RR+G  Y +  E+K+ +  NGY+ L GVL+EEE   LE+ F AF+  +VQV G+DFCDMS  +  P E + ++N MLP  Y PSL+ +N+ E RA SI++QLLG D+  DYDQ L K P++      A+F WHQD AYWP  T D RT +  LA++ ++ ENGCL  VPGSH E  LR H  L   RD  
Sbjct:    2 ADRRKGDEYIVAPEEKELYKQNGYVHLKGVLSEEEIDDLEKEFMAFIRREVQVDGRDFCDMSADYSKPIENFSIINIMLPSRYKPSLK-NNIYERRAASISKQLLGHDLTFDYDQLLAKPPNKP----DAIFHWHQDLAYWP-VTKDTRTASFWLAIDNSTLENGCLHFVPGSHLEPDLRDHGSLHGNRDNS 187          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|1180803801|ref|WP_084277566.1| (hypothetical protein [Novosphingobium sp. B1] >gi|1175035933|emb|SMC37392.1| Phytanoyl-CoA dioxygenase (PhyH) [Novosphingobium sp. B1])

HSP 1 Score: 181.03 bits (458), Expect = 2.423e-53
Identity = 98/184 (53.26%), Postives = 123/184 (66.85%), Query Frame = 0
Query:   20 RQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLA 203
            R G  Y +T E+   F  +GYI L GV+TE+E A LE  F+ F+ G+V   GKDFCDMS  +   FE + LVNA+LPR Y P+L+ DN+ E RA SI++QLLG+   LDYDQFL KRP++      AVF  HQD  YWP  TP+  T T SLAL++A  ENGCL+VVPGS ++  LR HRPLL 
Sbjct:    7 RNGDDYILTPEEIAQFHRDGYITLRGVMTEDELAPLEPEFERFIRGEVSGMGKDFCDMSGPYDREFENFSLVNAVLPRHYEPTLR-DNLYERRAASISRQLLGETATLDYDQFLAKRPAKP----DAVFTMHQDLGYWPTGTPEPLTATCSLALDDADLENGCLKVVPGSQKQ-GLRPHRPLLG 184          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|1026766374|gb|OAE26890.1| (hypothetical protein AXG93_4762s1000 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 183.726 bits (465), Expect = 2.506e-53
Identity = 94/193 (48.70%), Postives = 127/193 (65.80%), Query Frame = 0
Query:   14 DDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRD 206
            DDGA RR+G  Y++  E+ + + T GY+ L GVL+E+E   LE+ + +F+  +V V G+DFCDMS  +  P E + +VN MLP +Y P L+  N+ E RA SI++QLLG DM  DYDQ L K P   G+++G VF WHQD AYWP  T D RT +  LA++ +  ENGC++ VPG+H EK LR H PL   RD
Sbjct:    3 DDGAGRRKGDRYELMREEIECYKTMGYVHLKGVLSEDELHNLEEEYMSFLRHEVAVEGRDFCDMSADYSKPLEDYSIVNIMLPSKYNPWLK-GNIYEKRAASISEQLLGPDMVFDYDQLLAKPP---GKSDG-VFHWHQDLAYWP-VTDDTRTASFWLAIDNSRVENGCIQFVPGTHLEKNLRYHGPLHGDRD 189          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|168016685|ref|XP_001760879.1| (predicted protein [Physcomitrella patens] >gi|162687888|gb|EDQ74268.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 180.259 bits (456), Expect = 4.863e-53
Identity = 91/189 (48.15%), Postives = 121/189 (64.02%), Query Frame = 0
Query:   18 ARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRD 206
            +RRQG  Y ++ E+   F  +GY+ L GVL+E+E   LE+ F AF+  ++ V G+DFCDMS  +  P E++ ++N MLP +Y P L+  N+ E RA SIA+QLLG DM LDYDQ L K P++      A F WHQD AYWP  T D RT +  LA++ +  ENGC++ VPGSH E  LR H PL   RD
Sbjct:    6 SRRQGDRYVVSEEEIGKFKNDGYVHLKGVLSEDEVCNLEKEFMAFVRREIHVEGRDFCDMSGDYSKPMESFSIINIMLPSKYNPRLK-GNIYEKRAASIAEQLLGSDMVLDYDQLLAKPPNKP----DAEFKWHQDLAYWP-VTKDTRTASFWLAIDNSRVENGCVQFVPGSHLESSLRYHGPLHGDRD 188          
BLAST of EWM21695.1 vs. NCBI_GenBank
Match: gi|971516729|dbj|GAQ81477.1| (phytanoyl-CoA hydroxylase [Klebsormidium nitens])

HSP 1 Score: 179.104 bits (453), Expect = 1.344e-52
Identity = 90/189 (47.62%), Postives = 123/189 (65.08%), Query Frame = 0
Query:   18 ARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRD 206
             +R G  Y    ED+  F  +GY+ L GVL+ EE A +E+ +  F++ ++ V G+DFCDMS  +  P   + +VN MLPR+Y+P+L+ DNV E +A SIA QL G DM LDYDQ L K P   G+A+G +F WHQD AYWP  TPD  T +  LA++++  ENGC+R VPG+H E++LR H P    RD
Sbjct:    2 GKRIGGDYVCDDEDRGKFEADGYVHLSGVLSPEEIADIEKEYMKFIDRQILVEGRDFCDMSGDYSKPLSEFSIVNIMLPRKYHPTLK-DNVYEKKAASIAAQLCGPDMVLDYDQLLAKPP---GKADG-IFGWHQDLAYWP-ITPDTTTASFWLAIDDSRTENGCIRFVPGTHLERELRKHAPPFGDRD 184          
The following BLAST results are available for this feature:
BLAST of EWM21695.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101985|gb|EWM21695.1|3.021e-154100.00phytanoyl- dioxygenase [Nannochloropsis gaditana][more]
gi|930019043|ref|WP_054123333.1|6.726e-5853.80phytanoyl-CoA dioxygenase family protein [Novosphi... [more]
gi|1119408333|ref|WP_072383954.1|2.144e-5652.72phytanoyl-CoA dioxygenase family protein [Novosphi... [more]
gi|917728215|ref|WP_052242506.1|1.203e-5453.80phytanoyl-CoA dioxygenase family protein [Novosphi... [more]
gi|1011449840|ref|WP_062346911.1|1.243e-5453.80phytanoyl-CoA dioxygenase family protein [Novosphi... [more]
gi|148910293|gb|ABR18226.1|4.025e-5448.44unknown [Picea sitchensis][more]
gi|1180803801|ref|WP_084277566.1|2.423e-5353.26hypothetical protein [Novosphingobium sp. B1] >gi|... [more]
gi|1026766374|gb|OAE26890.1|2.506e-5348.70hypothetical protein AXG93_4762s1000 [Marchantia p... [more]
gi|168016685|ref|XP_001760879.1|4.863e-5348.15predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|971516729|dbj|GAQ81477.1|1.344e-5247.62phytanoyl-CoA hydroxylase [Klebsormidium nitens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9008rna9008Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications