rna9003, rna9003 (mRNA) Nannochloropsis gaditana

Overview
Namerna9003
Unique Namerna9003
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length663
Alignment locationKK037251.1:81938..82236 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101527g1.6831.mrna
Orig protein idgnl|cribi|Naga_101527g1.6831
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:81938..82236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101527g1gene8729Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9003rna9003-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21699.1cds8973Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9003 ID=rna9003|Name=rna9003|organism=Nannochloropsis gaditana|type=mRNA|length=663bp
ATGGTGGTGCAGACAAAGAAGAGACAGGGTAGGACTTTGAAATGTTATCG
TAGGGTTTGGCATTTGGAGATTGCTTCCTTTCTTGTGCTGCTCAAAGCTG
TGGTGCGACCTCGATTTATGGAAGGTTGTCCAAAAGCATGCGGGCGCCGA
ATCGATGAATCGAGAAATTCATGCTCGTATTCCTCTGTAAGCATCAGTTC
CAGGCATGAAAGTTGTTTTCTACACAGAAAAGATGCCTTTAAAAAGTTTG
TGGTAGCCTCGAAGAAGGGTAATGCAAGGAAACCTACACATCTTGCTTCC
AGAGGACAACGTCATCGACCCCCGAATGCGTATGCTGCCCCACCAGAGCA
GCATCAAAATCCTTTCTTACCTATTATCCATGGAAAGTTGCACACTTTAA
TTGGGAATTTTCTCTCTATGCTGTCAATTACGCGTTATAAACGTCCTCTA
AAATGGAGACTGGAAAACGGTAACTCCGAAATTCCGAGTTCCCTTCTTGA
AGCCCCCGTCCCTGTGTGGAACGCTGGGTGCAACGCACGCACGAGCAGGC
CCACAGGCTCGACGGGGCTGACCAATTTTAAGCTTGTGACAGGAAAAAAA
TTGTTGTGGTCGGCGGCTGTTCTTTTATGGCATGGGTGGACGGTGCGGGG
GGAAGACAAATAA
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protein sequence of rna9003

>rna9003-protein ID=rna9003-protein|Name=rna9003|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MTPSSPSSSKAARGRTKGAKGPRAEFKFKMRGSASYLNACIFQDLEICRR
RCCGAARIGTPGAYGARERMLHVRNLTNS
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mRNA from alignment at KK037251.1:81938..82236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9003 ID=rna9003|Name=rna9003|organism=Nannochloropsis gaditana|type=mRNA|length=299bp|location=Sequence derived from alignment at KK037251.1:81938..82236+ (Nannochloropsis gaditana)
ATGACACCGTCATCCCCCTCGAGCTCCAAAGCCGCCCGGGGTCGGACCAA
AGGGGCGAAGGGCCCCAGGGCAGAATTTAAATTCAAAATGAGGTGGAATC
AAATTTAAAAATTAACGGCCGGGCATGACGCCGTCTAGCAGTAGAGGGTA
GAGGGAGTGCTTCGTATTTGAATGCGTGCATTTTTCAGGATTTGGAAATC
TGTCGACGAAGATGCTGCGGGGCTGCCAGGATAGGCACGCCTGGAGCCTA
TGGAGCCCGAGAGCGAATGTTGCACGTTCGAAATCTTACAAATAGTTGA
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Coding sequence (CDS) from alignment at KK037251.1:81938..82236+

>rna9003 ID=rna9003|Name=rna9003|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at KK037251.1:81938..82236+ (Nannochloropsis gaditana)
ATGACACCGTCATCCCCCTCGAGCTCCAAAGCCGCCCGGGGTCGGACCAA
AGGGGCGAAGGGCCCCAGGGCAGAATTTAAATTCAAAATGAGAGGGAGTG
CTTCGTATTTGAATGCGTGCATTTTTCAGGATTTGGAAATCTGTCGACGA
AGATGCTGCGGGGCTGCCAGGATAGGCACGCCTGGAGCCTATGGAGCCCG
AGAGCGAATGTTGCACGTTCGAAATCTTACAAATAGTTGAATGACACCGT
CATCCCCCTCGAGCTCCAAAGCCGCCCGGGGTCGGACCAAAGGGGCGAAG
GGCCCCAGGGCAGAATTTAAATTCAAAATGAGAGGGAGTGCTTCGTATTT
GAATGCGTGCATTTTTCAGGATTTGGAAATCTGTCGACGAAGATGCTGCG
GGGCTGCCAGGATAGGCACGCCTGGAGCCTATGGAGCCCGAGAGCGAATG
TTGCACGTTCGAAATCTTACAAATAGTTGA
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Synonyms
Publications