EWM21707.1, cds8966 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21707.1
Unique Name	cds8966
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037251.1:47079..47446 -
Alignment location	KK037251.1:46897..46975 -
Alignment location	KK037251.1:46669..46738 -
Alignment location	KK037251.1:46489..46496 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21707.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100762g2.10490.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:47079..47446 -
KK037251.1	supercontig	KK037251.1:46897..46975 -
KK037251.1	supercontig	KK037251.1:46669..46738 -
KK037251.1	supercontig	KK037251.1:46489..46496 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21707.1 vs. NCBI_GenBank
Match: gi|585102018|gb|EWM21707.1| (hypothetical protein Naga_100762g2 [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 2.700e-119
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0

Query:    1 MPRLRNGKRRMYHVSLPTSHSKRVKRSGSNGSEGEEGGVSSGGSSGGGAEGGGNVGGGGGGRDGAVSGRGLSTSLVPPCPGKDTRQKKASGGVKCRRAGAKRAVRRMTGTALRGRVIPATSHSDPAATLLESLNLNVLSEVISFLGAQETEALAATSPSFRAKSSYRAYIQNSW 174
            MPRLRNGKRRMYHVSLPTSHSKRVKRSGSNGSEGEEGGVSSGGSSGGGAEGGGNVGGGGGGRDGAVSGRGLSTSLVPPCPGKDTRQKKASGGVKCRRAGAKRAVRRMTGTALRGRVIPATSHSDPAATLLESLNLNVLSEVISFLGAQETEALAATSPSFRAKSSYRAYIQNSW
Sbjct:    1 MPRLRNGKRRMYHVSLPTSHSKRVKRSGSNGSEGEEGGVSSGGSSGGGAEGGGNVGGGGGGRDGAVSGRGLSTSLVPPCPGKDTRQKKASGGVKCRRAGAKRAVRRMTGTALRGRVIPATSHSDPAATLLESLNLNVLSEVISFLGAQETEALAATSPSFRAKSSYRAYIQNSW 174

The following BLAST results are available for this feature:

BLAST of EWM21707.1 vs. NCBI_GenBank

BLAST of EWM21707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102018\|gb\|EWM21707.1\|	2.700e-119	100.00	hypothetical protein Naga_100762g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8996	rna8996	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications