EWM21717.1, cds8958 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21717.1
Unique Name	cds8958
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037251.1:21113..21292 +
Alignment location	KK037251.1:22010..22297 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21717.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100183g3.8964.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:21113..21292 +
KK037251.1	supercontig	KK037251.1:22010..22297 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21717.1 vs. NCBI_GenBank
Match: gi|585102034|gb|EWM21717.1| (hypothetical protein Naga_100183g3 [Nannochloropsis gaditana])

HSP 1 Score: 316.62 bits (810), Expect = 2.353e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MPRRLLERLWRTKHRERSLLGRGARGWERRIGLLVFVVKATTHGPPRLLRQQPDVLETSHGREQAPSNDKQADSPSGNMECSLLIRSQGFQDGFGDYFLLDAALFMTRAQLRMNCQGFQVHAGGNRICGGRGRRRRAPRPTLFLFSPKMFNAALC 155
            MPRRLLERLWRTKHRERSLLGRGARGWERRIGLLVFVVKATTHGPPRLLRQQPDVLETSHGREQAPSNDKQADSPSGNMECSLLIRSQGFQDGFGDYFLLDAALFMTRAQLRMNCQGFQVHAGGNRICGGRGRRRRAPRPTLFLFSPKMFNAALC
Sbjct:    1 MPRRLLERLWRTKHRERSLLGRGARGWERRIGLLVFVVKATTHGPPRLLRQQPDVLETSHGREQAPSNDKQADSPSGNMECSLLIRSQGFQDGFGDYFLLDAALFMTRAQLRMNCQGFQVHAGGNRICGGRGRRRRAPRPTLFLFSPKMFNAALC 155

The following BLAST results are available for this feature:

BLAST of EWM21717.1 vs. NCBI_GenBank

BLAST of EWM21717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102034\|gb\|EWM21717.1\|	2.353e-109	100.00	hypothetical protein Naga_100183g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8988	rna8988	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications