rna8988, rna8988 (mRNA) Nannochloropsis gaditana

Overview
Namerna8988
Unique Namerna8988
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1050
Alignment locationKK037251.1:21113..22297 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100183g3.8964.mrna
Orig protein idgnl|cribi|Naga_100183g3.8964
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:21113..22297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100183g3gene8713Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8988rna8988-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21717.1cds8958Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8988 ID=rna8988|Name=rna8988|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp
ATGTCAAGAAGCTCCCATCCGCATCAGGTGCTTCTTTCTTCCATCTACAA
GTCATTTAGTTCCCTCTATGGCCCAAGCCACATTCGTGCAGGCGTCAGCA
ATAGGCGGGAGCAGTGGTCTTTGTTTATGGGGTTGGTCCTAGGCATAGGC
CTTGCCACAATATTCAATGCCTTCCTGCTCCATACGGCAGAGTCCCGGCG
TCCAGACCCACATGCATCGTCATCTTTGACTTCGTCATTCCTCCCCCGCG
CAATTCGCTCCTTTTTCTCCCTCCCCTTTCCGTCGTCAACAAGATCCACC
GTCCCCACCATTGGCGTGTCAGGAAAACGGCCCAAGATTCTTCTGTTCGG
TGACAGCTTGACGCAGCGTGGCTTCGAAGGTCCTGGACAAGGATGGGCTG
CCGGCCTTGCCCACGCCTACGGCCGTCGGGCCGACATCGTGAACCGGGGG
TTCTCAGGTTACACGACGAAATGGTGCGCTTTGATGGCCCCCAGGCTTTT
CCCTGTCGGGGACCCCGCTTGGGAAGTGCCGGCGCTGGCCATTGTTTTTT
TGGGTGCCAACGACGCTGCCTTACCTAGTCGGGAGCAACATGTGCCCGTG
CATGAGTATGAACAGCACCTGCGTCGCATTGTCAGCCACCTGCAAGGACG
ACGGCGGGAGGACGGGTCGGCCACACGCGTCCTCCTTCTCACGCCCCCGC
CCGTGGACGAGGCGCGGTGGGAGGTGCATTGTCAGAGCCGAGGCCGGCCT
CTGGATCGGAAGAATGAGGTGACGCGGCTGTATGCCAGAGCGAGCAAAGG
GGTGGCGAGGGAGATGCAAGTGCCGGTGGTCGACTTGTGGAGAAGGCTGG
GGGGGAGGAGTCCGGAGGCGGTCGCCCCAAACCTGGGCGATGGCTTACAC
CTGTCCGCGCAGGGTAGTGTCTTGGTCTATGAGGCTGTCTTGACAGCGAT
CGAGGAAAACTACCCGGATTTGGCACCTTCCCAGTTGCCGATGCAGGCGC
CCGAGCACTTTGAATTGACGAGTCAGACCCAGAGCATCGAGGTGAACTAG
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protein sequence of rna8988

>rna8988-protein ID=rna8988-protein|Name=rna8988|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MPRRLLERLWRTKHRERSLLGRGARGWERRIGLLVFVVKATTHGPPRLLR
QQPDVLETSHGREQAPSNDKQADSPSGNMECSLLIRSQGFQDGFGDYFLL
DAALFMTRAQLRMNCQGFQVHAGGNRICGGRGRRRRAPRPTLFLFSPKMF
NAALC
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mRNA from alignment at KK037251.1:21113..22297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8988 ID=rna8988|Name=rna8988|organism=Nannochloropsis gaditana|type=mRNA|length=1185bp|location=Sequence derived from alignment at KK037251.1:21113..22297+ (Nannochloropsis gaditana)
ATGCCTCGGCGCCTGCTCGAGCGCTTGTGGAGAACGAAGCACCGGGAGCG
AAGCTTGCTGGGGAGAGGTGCAAGGGGCTGGGAGCGCAGGATCGGGCTCC
TTGTATTTGTGGTAAAAGCGACCACACATGGCCCACCAAGACTCCTCCGG
CAACAGCCAGACGTTCTCGAGACCTCGCATGTTCAAAAGAGAGGCGGAGC
GGGgcaaggacggggacgaagaggagcgctctttccccccttccctccct
gcccgccgggCCCTTTCTGCCTCTACTTCGGCCGcagcctcttccacccc
aCCTTCACCCGCCGCGCGCAAGGCGGTTGCTAGGTAAACACGCAGGCTGC
GAAAATGCAGAGGGGCCGCATTCTGAAGACACGTGCGACAGAGCGCCAGG
GCCTCTCGAGCTGCTGCTGGTTCGATCCTCCCACTCGAGCCACTCAGCGG
GGAGAGAAGCAAGTCCGCCAGCCGGAAACTCGCTGTGGCTACGAGAGCTT
CCATCTGCCATGACGCCTCGAAGAAGACcacaggagaggagggggatgag
gagggagagggagggggagagggcatgggggagcatggaggagaggtTGA
GGGCGAAGAAttgaaggaagtggaggaggtggaaacaGAGGAGGGCCTTG
GTTTTCGATTAATTTCCTGGGCATCGTTGAGTAGCAACAGGGCTTGGCGG
AAGACGACCGCAACGTGGGCTGCGGCCTCGCCCTGGTCCCTGAAAGCCCG
GTCCCAGCAGGCGCCCAGATCGTAGTACTTCAGCTGGGTGTAGTAGAGCC
ACAAGTAGGCCTTGATCAAAGGTGCCGCCATGGGAGACGCGTCAAGGAGG
GGTAAGTAGGTCTCAAGCAACGCTATGGCCTGGGGCCGCTGTTTTAGGGA
CGTGAGCAAGCGCCCAGCAATGACAAGCAGGCGGACAGTCCAAGTGGGAA
CATGGAGTGCAGCCTCCTGATACGAAGTCAAGGCTTCCAGGATGGATTTG
GCGACTACTTTCTGCTTGACGCGGCTCTCTTCATGACCAGAGCACAGCTG
CGCATGAACTGCCAGGGCTTTCAAGTACATGCGGGCGGCAACCGAAtttg
tggagggcgaggaagaaggagacgagcacCCAGGCCTACATTGTTTCTGT
TTTCGCCGAAGATGTTCAATGCTGCCCTTTGCTAG
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Coding sequence (CDS) from alignment at KK037251.1:21113..22297+

>rna8988 ID=rna8988|Name=rna8988|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at KK037251.1:21113..22297+ (Nannochloropsis gaditana)
ATGCCTCGGCGCCTGCTCGAGCGCTTGTGGAGAACGAAGCACCGGGAGCG
AAGCTTGCTGGGGAGAGGTGCAAGGGGCTGGGAGCGCAGGATCGGGCTCC
TTGTATTTGTGGTAAAAGCGACCACACATGGCCCACCAAGACTCCTCCGG
CAACAGCCAGACGTTCTCGAGACCTCGCATGGACGTGAGCAAGCGCCCAG
CAATGACAAGCAGGCGGACAGTCCAAGTGGGAACATGGAGTGCAGCCTCC
TGATACGAAGTCAAGGCTTCCAGGATGGATTTGGCGACTACTTTCTGCTT
GACGCGGCTCTCTTCATGACCAGAGCACAGCTGCGCATGAACTGCCAGGG
CTTTCAAGTACATGCGGGCGGCAACCGAAtttgtggagggcgaggaagaa
ggagacgagcacCCAGGCCTACATTGTTTCTGTTTTCGCCGAAGATGTTC
AATGCTGCCCTTTGCTAGATGCCTCGGCGCCTGCTCGAGCGCTTGTGGAG
AACGAAGCACCGGGAGCGAAGCTTGCTGGGGAGAGGTGCAAGGGGCTGGG
AGCGCAGGATCGGGCTCCTTGTATTTGTGGTAAAAGCGACCACACATGGC
CCACCAAGACTCCTCCGGCAACAGCCAGACGTTCTCGAGACCTCGCATGG
ACGTGAGCAAGCGCCCAGCAATGACAAGCAGGCGGACAGTCCAAGTGGGA
ACATGGAGTGCAGCCTCCTGATACGAAGTCAAGGCTTCCAGGATGGATTT
GGCGACTACTTTCTGCTTGACGCGGCTCTCTTCATGACCAGAGCACAGCT
GCGCATGAACTGCCAGGGCTTTCAAGTACATGCGGGCGGCAACCGAAttt
gtggagggcgaggaagaaggagacgagcacCCAGGCCTACATTGTTTCTG
TTTTCGCCGAAGATGTTCAATGCTGCCCTTTGCTAG
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Synonyms
Publications