rna8982, rna8982 (mRNA) Nannochloropsis gaditana

Overview
Namerna8982
Unique Namerna8982
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length472
Alignment locationKK037250.1:631000..632859 +

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Properties
Property NameValue
Productubiquitin carboxyl-terminal hydrolase 22
Orig transcript idgnl|cribi|Naga_101305g1.3078.mrna
Orig protein idgnl|cribi|Naga_101305g1.3078
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:631000..632859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101305g1gene8707Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8982rna8982-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21721.1cds8952Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8982 ID=rna8982|Name=rna8982|organism=Nannochloropsis gaditana|type=mRNA|length=472bp
TAGACAGGTGCCATGGTGAATGTGGAAATATCTTGCACGTGTCCGCACCT
GGATGTAGGCAAATTATCAAAACCGGCAGCATTACCATCTCCTCCATCAG
CCATTTTTACTGCCCCTACATCTTCTCCTTCCGCTTCACCCACGGGCTCT
CGTGCTTTAAAACGGAAACCAGCGGAGTCAATTTCATCAGTACGTACTCA
AGCGTTGGCAAATTACCATCGCTTTCTGCAAAAAGAAGAGCAAAGCATGC
AAAGAGCAGCATCCACAGGCATTATCAACGATGGAAGAGGAAGCTTCAAC
GCCCGAATTGAAAGTGCTGCGATAACAACGGCACATTTCTCTCGGTAAGA
ACACGCAAATTTAACCCTTAAAGCTCTCCTTCGCTCCTCTAATGCGTTAA
AGATTCGTGATACAGGTATTTTTTCGACCAAATTTCCTTCCCTGCATCCT
GCTTGAGTGCTTCGATCTTTCT
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protein sequence of rna8982

>rna8982-protein ID=rna8982-protein|Name=rna8982|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MCPGCQHRSPSSTADDDGCKDRCDRAARSPVVRSKESSVVDWVMKEREDM
LYCLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCF
LCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQPS
LVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK
AQGSRKAATLVWEGDTTGGGKEGGQVGARNLKEPCAVHWPDRGERSNGER
PGPTSSSFVTAPCLACELQELFLLVRKKRLAS
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mRNA from alignment at KK037250.1:631000..632859+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8982 ID=rna8982|Name=rna8982|organism=Nannochloropsis gaditana|type=mRNA|length=1860bp|location=Sequence derived from alignment at KK037250.1:631000..632859+ (Nannochloropsis gaditana)
GATGGAAGAGTGGAAAGCCTTAAAAGAAGCATACTGATAGATGTAGTAGT
TGATCGGCTAATAGTATATGACATATTAATACAACGTAATGTACctgaag
aaaaagggggcatCCGAAAGACTTCCCACAAAGACGATTAGGAACTTCCC
GATCCGTTAGACATCCATGAATGACCAACATATTTCCTGCGCACCCAGTT
ATTttggggaaaaggaaatccTTATCGTTTTGAAATTGCTCCATATTCTG
GCAACATTCCACGAACAGGTCGGCGCAGAGCACGATTGCCGAGACATTGG
TCATGTGTCCCGGCTGCCAACACCGatccccctcctctaccGCCGACGAT
GATGGATGCAAGGATCGCTGCGATAGAGCTGCACGTAGCCCCGTAGTCAG
AAGCAAAGAAAGCAGTGTGGTCGACTGGGtgatgaaggaaagggaagaca
tGCTGTATTGCCTGCAGTGCGGCTACAGAGCATGTCGCAGGTACCAGCAT
ATCGAAAAGCACTTCTTGGTCACGAACCACTTTCTCGGGGTTGCGCCCTA
CGCTccaggagggatggaaggaggggatggaggcggggggattTTCTGCT
TCCTGTGCGGGGACAATGTCTACGATGTGGAGTTTGACCTGATCAGGCTT
TTGTGGGCCCAGGCCCGTTCCAGCGATtcccgcagcctcctccgccgacc
accctccctccgtccttccctcttcacctGGCCTCTCCTTGCACAGCCCA
GCCTTGTTCGACATGCCACGTATGGCCTCCGTGGTTTCTGCAATCTGGGT
AGCACTTGCTTTATGAGCTGTATCCTCCAGGCACTGCTTCACAATCCCGT
CCTCAaagacttcttcctccgccgccgccactcccTTGCCACGTGCCCGA
AAGCGCAAGGGTCTCGCAAAGCCGCTACCTTGGTCTGGGAAGGAGACACT
accggcggaggaaaagagggggggcaggtggGCGCACGCAACTTGAAGGA
GCCGTGCGCGGTCCACTGGCCCGACCGAGGCGAGCGGTCAAACGGAGAGC
GTCCTGGCCctacgtcctcctcctttgtgaCCGCACCGTGCCTAGCCTGC
GAACTCCAAGAGCTCTTCCTGCTCGTCAGAAAGAAACGATTGGCCTCATA
GTCGCAAAGACTGTCGAGTCTGTACGAGGAATATGGAATAATGATACGAT
GAGTTCCGTGGGAGACCTTTCATGCAGTAGTTGCTGATCCTGTGGTACTT
CTTTGGATAGATTAGTAGTAAGCAAAGTTAAGGCTGCTCATGATTGGGTG
CCTGTAagctttttttctttcatttttgTTTTCTCCTTCTATCTGATTAT
TCTACCTTTTTCTTCGTTCTTTGGTTGTTAATCGTCTTCTCCCACTGATA
CATGTTAACGAGGCGTATAGGACTTCAAAAAGACTTGCCTGCTAATACCT
ATCTTTTGATTATCCACAATAGGAAAACGTATAAAGTTCCAAAAGACATA
ATAAGCCGTACAGGCTGGGTCGAAAAACGCTGCGTGATTTTTCAATAACA
TATGGTGTCCATTTAGAGTTCATCGATAATTTAAAACATATGATAGATAT
GCTTATATCGACATGATCTTATCATTACTGGCATAAatctctcctttttc
ccttgaGTTGCCCAGGCAAGCGATCCAATAACACCCACAATATTTGTTAC
ACAAACCAGCGTAAGCACATATACTGGGGCTTTCACCAAACTTGGGTTAC
TGTGTCAACAATCCAAAAAAATCATCTGAAATCGCTGATTAGCGTGAAAA
ATTTATGTATACATAGTGAGAAGGAGACTACATGCAATCATTAAAGAAAT
GAAACAAACG
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Coding sequence (CDS) from alignment at KK037250.1:631000..632859+

>rna8982 ID=rna8982|Name=rna8982|organism=Nannochloropsis gaditana|type=CDS|length=849bp|location=Sequence derived from alignment at KK037250.1:631000..632859+ (Nannochloropsis gaditana)
ATGTGTCCCGGCTGCCAACACCGatccccctcctctaccGCCGACGATGA
TGGATGCAAGGATCGCTGCGATAGAGCTGCACGTAGCCCCGTAGTCAGAA
GCAAAGAAAGCAGTGTGGTCGACTGGGtgatgaaggaaagggaagacatG
CTGTATTGCCTGCAGTGCGGCTACAGAGCATGTCGCAGGTACCAGCATAT
CGAAAAGCACTTCTTGGTCACGAACCACTTTCTCGGGGTTGCGCCCTACG
CTccaggagggatggaaggaggggatggaggcggggggattTTCTGCTTC
CTGTGCGGGGACAATGTCTACGATGTGGAGTTTGACCTGATCAGGCTTTT
GTGGGCCCAGGCCCGTTCCAGCGATtcccgcagcctcctccgccgaccac
cctccctccgtccttccctcttcacctGGCCTCTCCTTGCACAGCCCAGC
CTTGTTCGACATGCCACGTATGGCCTCCGTGGTTTCTGCAATCTGGGTAG
CACTTGCTTTATGAGCTGTATCCTCCAGGCACTGCTTCACAATCCCGTCC
TCAaagacttcttcctccgccgccgccactcccTTGCCACGTGCCCGAAA
GCGCAAGGGTCTCGCAAAGCCGCTACCTTGGTCTGGGAAGGAGACACTac
cggcggaggaaaagagggggggcaggtggGCGCACGCAACTTGAAGGAGC
CGTGCGCGGTCCACTGGCCCGACCGAGGCGAGCGGTCAAACGGAGAGCGT
CCTGGCCctacgtcctcctcctttgtgaCCGCACCGTGCCTAGCCTGCGA
ACTCCAAGAGCTCTTCCTGCTCGTCAGAAAGAAACGATTGGCCTCATAG
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Synonyms
Publications