EWM21721.1, cds8952 (CDS) Nannochloropsis gaditana

Overview
NameEWM21721.1
Unique Namecds8952
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:631302..632150 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21721.1
Productubiquitin carboxyl-terminal hydrolase 22
Orig transcript idgnl|cribi|Naga_101305g1.3078.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:631302..632150 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0008270zinc ion binding
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR018200USP_CS
IPR001607Znf_UBP
IPR001394Peptidase_C19_UCH
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|585102040|gb|EWM21721.1| (ubiquitin carboxyl-terminal hydrolase 22 [Nannochloropsis gaditana])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MCPGCQHRSPSSTADDDGCKDRCDRAARSPVVRSKESSVVDWVMKEREDMLYCLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQPSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPKAQGSRKAATLVWEGDTTGGGKEGGQVGARNLKEPCAVHWPDRGERSNGERPGPTSSSFVTAPCLACELQELFLLVRKKRLAS 282
            MCPGCQHRSPSSTADDDGCKDRCDRAARSPVVRSKESSVVDWVMKEREDMLYCLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQPSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPKAQGSRKAATLVWEGDTTGGGKEGGQVGARNLKEPCAVHWPDRGERSNGERPGPTSSSFVTAPCLACELQELFLLVRKKRLAS
Sbjct:    1 MCPGCQHRSPSSTADDDGCKDRCDRAARSPVVRSKESSVVDWVMKEREDMLYCLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQPSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPKAQGSRKAATLVWEGDTTGGGKEGGQVGARNLKEPCAVHWPDRGERSNGERPGPTSSSFVTAPCLACELQELFLLVRKKRLAS 282          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|766941181|ref|XP_011503216.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Ceratosolen solmsi marchali])

HSP 1 Score: 98.9821 bits (245), Expect = 7.649e-20
Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = 0
Query:   45 KEREDMLY-CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLI-RLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQP----SLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
            K  +D L+ CL C +  C    HI++H     HFL V              G I CF CGD VYD E  ++ +  W++   S S     R  +  PSL+   LL +      +V ++T GLRG  NLGSTCFM+CI+QAL+H P+L+D+FL  RH    CP+
Sbjct:   50 KSYKDRLHSCLHCIFFGCYVKGHIQEHAKTKKHFLAVDL----------CYGNILCFQCGDYVYDRELLVVAKAQWSETAKSLSLGEFYR--TWEPSLYEVELLKKNPRRRRVVENSTIGLRGLINLGSTCFMNCIVQALIHTPLLRDYFLADRHH---CPQ 196          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|929767739|ref|XP_014158850.1| (hypothetical protein, variant [Sphaeroforma arctica JP610] >gi|906956384|gb|KNC84947.1| hypothetical protein, variant [Sphaeroforma arctica JP610])

HSP 1 Score: 98.2117 bits (243), Expect = 1.632e-19
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 0
Query:   53 CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPS-LRPSLFT-W-------PLLAQ----PSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPKAQGSRKAATLVWE 213
            CL C    CRR +H+++H+  T H L +                ++C +CG+ VYDV+ D  R++  + R +    L R  PS  R + F+ W        +L Q    P L  +++ GLRG  NLG+TCFMSC+LQA +HNP L++FFL   H    C +         LV E
Sbjct:   65 CLTCASYHCRRKEHLKQHYKETKHELAIDV----------ANNAVYCLVCGEYVYDVDID--RVIINEQRQAALSDLKRSDPSNFRRTAFSEWVPDGTEKAILNQHSKRPRLTEYSSLGLRGLNNLGNTCFMSCVLQAFVHNPPLRNFFLSGSHRKDRCMRRLSGDSKVCLVCE 226          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|929767737|ref|XP_014158849.1| (hypothetical protein SARC_02839 [Sphaeroforma arctica JP610] >gi|906956385|gb|KNC84948.1| hypothetical protein SARC_02839 [Sphaeroforma arctica JP610])

HSP 1 Score: 98.2117 bits (243), Expect = 1.669e-19
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 0
Query:   53 CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPS-LRPSLFT-W-------PLLAQ----PSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPKAQGSRKAATLVWE 213
            CL C    CRR +H+++H+  T H L +                ++C +CG+ VYDV+ D  R++  + R +    L R  PS  R + F+ W        +L Q    P L  +++ GLRG  NLG+TCFMSC+LQA +HNP L++FFL   H    C +         LV E
Sbjct:   65 CLTCASYHCRRKEHLKQHYKETKHELAIDV----------ANNAVYCLVCGEYVYDVDID--RVIINEQRQAALSDLKRSDPSNFRRTAFSEWVPDGTEKAILNQHSKRPRLTEYSSLGLRGLNNLGNTCFMSCVLQAFVHNPPLRNFFLSGSHRKDRCMRRLSGDSKVCLVCE 226          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|1078806334|ref|XP_018495456.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Galendromus occidentalis])

HSP 1 Score: 95.9005 bits (237), Expect = 9.517e-19
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   53 CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQ--ARSSDSRSLLRRPPSLRPSLFTWPLLA-QPSLVR---HATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRH 193
            CLQC Y  CR Y H ++H   +NH + ++             G ++C+LC + V+D EFD+I +   Q  A   D    +R  P   P      LL+ QP  +R       GLRG  NLG+TCFM+CI+Q L H P L+++FL ++H
Sbjct:   63 CLQCCYVGCRLYNHSQEHHEESNHHVAISL----------SHGVLYCYLCAEYVHDYEFDIIAIKARQRLADFLDLNEFVRSVPLWNPKYGELELLSLQPKRMRVDSKTPIGLRGLYNLGNTCFMNCIIQCLTHTPFLREYFLSQQH 199          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|817066217|ref|XP_012254936.1| (ubiquitin carboxyl-terminal hydrolase 22 [Athalia rosae])

HSP 1 Score: 95.5153 bits (236), Expect = 1.433e-18
Identity = 63/162 (38.89%), Postives = 85/162 (52.47%), Query Frame = 0
Query:   45 KEREDMLY-CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLI-RLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQP----SLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
            K  +D L+ CL C +  C    HI++H     HFL V              G I CF CGD VYD E   + +  W+Q  S+ S SL     +  P+     LL +      +V ++T GLRG  NLGSTCFM+CI+QAL+H P+L+D+FL  RH    CP+
Sbjct:   50 KTYKDRLHSCLHCIFFGCYLRGHIQEHAKTKKHFLAVDL----------SYGNILCFQCGDYVYDRELTAVAKSQWSQ--SARSLSLGEFYRAWEPTQVEADLLRKNPRRRRIVENSTIGLRGLINLGSTCFMNCIVQALIHTPLLRDYFLADRHH---CPQ 196          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|954545112|ref|XP_014615006.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Polistes canadensis])

HSP 1 Score: 95.5153 bits (236), Expect = 1.825e-18
Identity = 59/153 (38.56%), Postives = 78/153 (50.98%), Query Frame = 0
Query:   53 CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEF-DLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQP----SLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
            CL C +  C    HI++H     HFL V              G I CF CGD VYD E   + +  W+Q   S S     R  +  P+     LL +      +V ++T GLRG  NLGSTCFM+CI+QAL+H P+L+D+FL  RH    CP+
Sbjct:  209 CLHCIFFGCYVKGHIQEHAKTKKHFLAVDL----------SYGNILCFQCGDYVYDRELLSVAKAQWSQLAKSLSFGEFYR--TWEPTQIEAELLRKHPRRRRVVENSTIGLRGLINLGSTCFMNCIVQALIHTPLLRDYFLADRHH---CPQ 346          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|939259347|ref|XP_014249494.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cimex lectularius])

HSP 1 Score: 95.1301 bits (235), Expect = 1.860e-18
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 0
Query:   50 MLYCLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQ-PSLVR---HATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRH 193
            +L C+ C Y  C   +H   HF  T H L V              G +FCF CGD VYD + ++I       RS    S + + P  RPS F   LL + P  ++   H+  G+RG  N GS+C+++CI+QAL H P+L+D+F   +H
Sbjct:   56 LLACMHCVYMGCYN-KHATLHFTKTAHALTVEL----------SNGNVFCFSCGDYVYDRDIEIIAT--KHKRSMGINSAIPKSPPWRPSNFENKLLQEHPKRIKLEAHSQIGIRGMINFGSSCYLNCIMQALFHTPILRDYFFTEKH 190          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|998512091|ref|XP_015516605.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 isoform X1 [Neodiprion lecontei])

HSP 1 Score: 94.7449 bits (234), Expect = 2.123e-18
Identity = 63/162 (38.89%), Postives = 85/162 (52.47%), Query Frame = 0
Query:   45 KEREDMLY-CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEFDLI-RLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQP----SLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
            K  +D L+ CL C +  C    HI++H     HFL V              G I CF CGD VYD E   + +  W+Q  S+ S SL     +  P+     LL +      +V ++T GLRG  NLGSTCFM+CI+QAL+H P+L+D+FL  RH    CP+
Sbjct:   50 KTYKDRLHSCLHCIFFGCYSKGHIQEHAKTKKHFLAVDL----------CYGNILCFQCGDYVYDRELTAVAKSQWSQ--SARSLSLGEFYRAWEPTQVEADLLRKNPRRRRIVENSTIGLRGLINLGSTCFMNCIVQALIHTPLLRDYFLADRHH---CPQ 196          
BLAST of EWM21721.1 vs. NCBI_GenBank
Match: gi|156549078|ref|XP_001607506.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Nasonia vitripennis])

HSP 1 Score: 95.1301 bits (235), Expect = 2.163e-18
Identity = 62/162 (38.27%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   45 KEREDMLY-CLQCGYRACRRYQHIEKHFLVTNHFLGVAPYAPGGMEGGDGGGGIFCFLCGDNVYDVEF-DLIRLLWAQARSSDSRSLLRRPPSLRPSLFTWPLLAQP----SLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
            K  +D L+ CL C +  C    HI++H     HFL V              G I CF CGD VYD E   + +  W++   S S     R  +  PS+    LL +      +V ++T GLRG  NLGSTCFM+CI+QAL+H P+L+D+FL  RH    CP+
Sbjct:   50 KTYKDRLHSCLHCIFFGCYVKGHIQEHAKTKKHFLAVDL----------CYGNILCFQCGDYVYDRELLSVAKAQWSETAKSLSLGEFYR--TWEPSVNEVELLRKNPRRRRVVENSTIGLRGLINLGSTCFMNCIVQALIHTPLLRDYFLADRHH---CPQ 196          
The following BLAST results are available for this feature:
BLAST of EWM21721.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102040|gb|EWM21721.1|0.000e+0100.00ubiquitin carboxyl-terminal hydrolase 22 [Nannochl... [more]
gi|766941181|ref|XP_011503216.1|7.649e-2038.89PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
gi|929767739|ref|XP_014158850.1|1.632e-1934.48hypothetical protein, variant [Sphaeroforma arctic... [more]
gi|929767737|ref|XP_014158849.1|1.669e-1934.48hypothetical protein SARC_02839 [Sphaeroforma arct... [more]
gi|1078806334|ref|XP_018495456.1|9.517e-1936.73PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
gi|817066217|ref|XP_012254936.1|1.433e-1838.89ubiquitin carboxyl-terminal hydrolase 22 [Athalia ... [more]
gi|954545112|ref|XP_014615006.1|1.825e-1838.56PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
gi|939259347|ref|XP_014249494.1|1.860e-1835.81PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
gi|998512091|ref|XP_015516605.1|2.123e-1838.89PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
gi|156549078|ref|XP_001607506.1|2.163e-1838.27PREDICTED: ubiquitin carboxyl-terminal hydrolase 2... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8982rna8982Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications