EWM21726.1, cds8947 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21726.1
Unique Name	cds8947
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:618147..618266 +
Alignment location	KK037250.1:618364..618564 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21726.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101008g1.2154.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:618147..618266 +
KK037250.1	supercontig	KK037250.1:618364..618564 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Homology

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BLAST of EWM21726.1 vs. NCBI_GenBank
Match: gi|585102049|gb|EWM21726.1| (hypothetical protein Naga_101008g1 [Nannochloropsis gaditana])

HSP 1 Score: 219.164 bits (557), Expect = 2.532e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query:    1 MQRIGRVGRFGRAGTAISIIPPYQVDKSSGRNYSIQHITEAYHNTINRWDFLQGDYPPRDPFVLQLPGFGIEQDLLNGAREAEAEAAAEAGVEGLSKGMAEMGVGN 106
            MQRIGRVGRFGRAGTAISIIPPYQVDKSSGRNYSIQHITEAYHNTINRWDFLQGDYPPRDPFVLQLPGFGIEQDLLNGAREAEAEAAAEAGVEGLSKGMAEMGVGN
Sbjct:    1 MQRIGRVGRFGRAGTAISIIPPYQVDKSSGRNYSIQHITEAYHNTINRWDFLQGDYPPRDPFVLQLPGFGIEQDLLNGAREAEAEAAAEAGVEGLSKGMAEMGVGN 106

The following BLAST results are available for this feature:

BLAST of EWM21726.1 vs. NCBI_GenBank

BLAST of EWM21726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102049\|gb\|EWM21726.1\|	2.532e-72	100.00	hypothetical protein Naga_101008g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8977	rna8977	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications