EWM21742.1, cds8931 (CDS) Nannochloropsis gaditana

Overview
NameEWM21742.1
Unique Namecds8931
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:580748..581278 +
Alignment locationKK037250.1:581406..581831 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21742.1
Producttwo component transcriptional family
Orig transcript idgnl|cribi|Naga_100303g9.771.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:580748..581278 +
KK037250.1supercontigKK037250.1:581406..581831 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR016032Sig_transdc_resp-reg_C-effctor
IPR011991WHTH_DNA-bd_dom
IPR000792Tscrpt_reg_LuxR_C
Homology
[Close]
BLAST of EWM21742.1 vs. NCBI_GenBank
Match: gi|585102073|gb|EWM21742.1| (two component transcriptional family [Nannochloropsis gaditana])

HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0 
Query:    1 MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLRLCPPSCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
            MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLRLCPPSCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE
Sbjct:    1 MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLRLCPPSCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
[Close]
BLAST of EWM21742.1 vs. NCBI_GenBank
Match: gi|553191087|ref|XP_005855317.1| (two component transcriptional family [Nannochloropsis gaditana CCMP526] >gi|422293736|gb|EKU21036.1| two component transcriptional family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 316/318 (99.37%), Postives = 316/318 (99.37%), Query Frame = 0 
Query:    1 MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLRLCPPSCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
            MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLR CP SCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE
Sbjct:    1 MPSSVQICGRVIPCTAFLPYLLLLLLFPTHCFSFVISLRPCPSSCTKTCLHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
The following BLAST results are available for this feature:
BLAST of EWM21742.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102073|gb|EWM21742.1|0.000e+0100.00two component transcriptional family [Nannochlorop... [more]
gi|553191087|ref|XP_005855317.1|0.000e+099.37two component transcriptional family [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8961rna8961Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications