EWM21764.1, cds8908 (CDS) Nannochloropsis gaditana

Overview
NameEWM21764.1
Unique Namecds8908
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:524416..524443 -
Alignment locationKK037250.1:524113..524250 -
Alignment locationKK037250.1:523740..523900 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21764.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100298g6.7620.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:524416..524443 -
KK037250.1supercontigKK037250.1:524113..524250 -
KK037250.1supercontigKK037250.1:523740..523900 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|585102097|gb|EWM21763.1| (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana] >gi|585102098|gb|EWM21764.1| hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 223.016 bits (567), Expect = 8.555e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108
            MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108          
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|585102096|gb|EWM21762.1| (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 214.542 bits (545), Expect = 1.875e-70
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0
Query:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108
            MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSY   T 
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYDVGTE 108          
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|953499933|emb|CEG38574.1| (hypothetical protein PHALS_08638 [Plasmopara halstedii])

HSP 1 Score: 56.6102 bits (135), Expect = 4.607e-8
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDK 74
            C  IFS IGF+FL+++G ++  QPI++H    P+  A +C+  A +YA  + +C   W  +K
Sbjct:    7 CGTIFSFIGFVFLVVVGCLLKLQPIYIHNAKTPNSGANSCFEAAMLYAVAMGVCYTLWRKEK 68          
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|673021756|ref|XP_008864839.1| (hypothetical protein H310_02923 [Aphanomyces invadans] >gi|574479770|gb|ETW06764.1| hypothetical protein H310_02923 [Aphanomyces invadans])

HSP 1 Score: 55.4546 bits (132), Expect = 1.124e-7
Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEE 90
            CC IFS+ G  FL+ +G ++  QP F+  V  P  SA +C+  AG+YAG     ++ W  ++  K   +++ G +K++
Sbjct:    5 CCSIFSLAGTTFLLCMGALLRLQPEFIRDVHTPKSSANSCFVSAGLYAGVFVGSMILWRREQHVKG--SSSVGEIKDD 80          
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|1210524972|dbj|GAX16164.1| (hypothetical protein FisN_3Hh355 [Fistulifera solaris])

HSP 1 Score: 55.0694 bits (131), Expect = 1.257e-7
Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAA 82
            CC  +S  GFLF + +G++V  QP F+ G+ +   +    +G  G++  T    +    YD K KE  AA
Sbjct:   11 CCAFYSFTGFLFTLWVGVMVHSQPFFIAGIEDAEEARANAFGAMGMFLVTFFASIAGIWYDSKNKESVAA 80          
BLAST of EWM21764.1 vs. NCBI_GenBank
Match: gi|154335619|ref|XP_001564048.1| (conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|731693341|ref|XP_010697950.1| hypothetical protein LPMP_181160 [Leishmania panamensis] >gi|134061079|emb|CAM38100.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|685203054|gb|AIN97297.1| hypothetical protein LPMP_181160 [Leishmania panamensis] >gi|1099053870|emb|CCM14502.1| hypothetical protein, conserved [Leishmania guyanensis])

HSP 1 Score: 53.1434 bits (126), Expect = 7.755e-7
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 0
Query:    8 ECCAPCCGIFSIIGFLFLIILGIIVDKQPIF-----VHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGAT 106
            + CA CC +FS++G + L++ G +  ++ I      V    +  + A ACY GA IY  TL L V+A +Y ++    +AA     + EE   L +    S G+T
Sbjct:    4 DSCATCCAVFSLLGIVHLVLFGRMFSEKAISFAIIAVENGWDGEKKAKACYNGAIIYTATLFLSVLARVYFRRNDAAKAALLYAQRAEEIQGLLVPPTLSTGST 107          
The following BLAST results are available for this feature:
BLAST of EWM21764.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585102097|gb|EWM21763.1|8.555e-74100.00hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
gi|585102096|gb|EWM21762.1|1.875e-7096.30hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
gi|953499933|emb|CEG38574.1|4.607e-837.10hypothetical protein PHALS_08638 [Plasmopara halst... [more]
gi|673021756|ref|XP_008864839.1|1.124e-733.33hypothetical protein H310_02923 [Aphanomyces invad... [more]
gi|1210524972|dbj|GAX16164.1|1.257e-732.86hypothetical protein FisN_3Hh355 [Fistulifera sola... [more]
gi|154335619|ref|XP_001564048.1|7.755e-731.73conserved hypothetical protein [Leishmania brazili... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8938rna8938Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications