rna8938, rna8938 (mRNA) Nannochloropsis gaditana

Overview
Namerna8938
Unique Namerna8938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1195
Alignment locationKK037250.1:523311..524634 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100298g6.7620.mrna
Orig protein idgnl|cribi|Naga_100298g6.7620
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:523311..524634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100298g6gene8664Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8938rna8938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21764.1cds8908Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8938 ID=rna8938|Name=rna8938|organism=Nannochloropsis gaditana|type=mRNA|length=1195bp
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGCACCGTGCTGTGGCATATTTTCCATCAT
CGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTA
TCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTAC
GGAGGCGCGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATG
GATGTATGACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTAC
TGAAGGAGGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATAC
GGTGCGACCACTCGCTAGCCCCACTTGACTAATAATACGTGGGCACAGAG
ATGACGCGCGTTCCAGCTTGAGGACTCGAGGCTTGAACGACAAAGGAGGA
GAGGAACGGATGGAGATGTGTACTGAAAGGGGCGTCGCGTGTGGGGGAGG
GAAGGAGAGGAACCAAATGCAGAAAATAAACAGGCGAGGAGATCAAAAAG
GTGCAGGTAGGAAGAGACTGCTTCGGCATTTTGGCGGAGCCTATGTGTGA
AAAGCGGATGTTTAGATTGAGGAAAGCATAGAGTGCATAAGACAATTATT
GATGGGGGAAGATGCAGGATAAACTGAATATTGGAAGGGAAAGTGGTGGA
GAAGAGCCGCTGGTGGAACACCTGGAGAGAGTCTAGGCACGCGGAGTTGC
AATCGACCGTCGCTCTATTTTGAGGCAAGCGAGACAAATGTCAAAGGTTT
ACTGTTCTGTGGAATCGCATATTTCCTTCGGCTGCGCTTTTGTCCCCCTC
CGCCTTGTTACCGCGGTGCCTGTCGCCTTCATCGAAAGCCGTCCATGAAT
AGCCCTCCTGTCTGCGTCTCGCTCCTTAAATTGCTCCCCTCTTTTCCCAA
AACGGAGCCCCGTGCACACCTTTCTCGATCCGATCCGTCCACTTCACCAG
CCTGCTTGTCCCCGAGTGTCCCTCCTCCCTCCACATTCACAACCA
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protein sequence of rna8938

>rna8938-protein ID=rna8938-protein|Name=rna8938|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAV
ACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRP
GSYGATTR
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mRNA from alignment at KK037250.1:523311..524634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8938 ID=rna8938|Name=rna8938|organism=Nannochloropsis gaditana|type=mRNA|length=1324bp|location=Sequence derived from alignment at KK037250.1:523311..524634- (Nannochloropsis gaditana)
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGAGTATCCTGTCAGGGGGATCCTTTTCTT
CGATTCTCCCCCCCCCTCCTATCTTTCCGACTCTTCCCTGTGTTTTCTCT
TCCCCTCACTCCTGCGGGAATGCGCGGGCTGATATCCTCACATTTCACAA
TATTGCACACCGGAATGTTTGGTTCACTCAACAGGTGCACCGTGCTGTGG
CATATTTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATAATTG
TTGACAAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAGATCA
GCCGTGGCCTGTTACGGAGGCGGTACGTGACGCGAGATGGTTAACAAGTT
GAGGGATAGATGAGAAGGCAAAGAGCCAGGGAATGACACGGTCTTGGCAG
GCTTTGGGGGATCGCGGGGGCAGAGCCTTCAAGGAAAAGAGAAGAGATGC
AGGCGGGACGTGGATTGCAGGACGCCACAACGATTATGTTCTGGTCTCAC
CCCTTTTCTTTTTTCTCTCTAACGATTGGCACAGCGGGTATTTACGCGGG
CACCCTTGCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGG
AGCACCGGGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCT
CTCAACATCCAGCGACCAGGATCATACGGTGCGACCACTCGCTAGCCCCA
CTTGACTAATAATGTAGGCGTACTCATGAACATTCCCCCTTTGAAGCCTT
TGTGTGAAGGAGAGGGACCGCGTGCTTTGACTGTCTTTCTTCTTGGTGTC
GAGCGTTTGTGTAATTTCGTCTAGCCGGGTGTTTGGAGCCATGGGTAGGA
GAGGAATGCGATGCATTGCGTGTAGGGGGGTGGCGAACGTCTGTATCGTG
CCTCTTGCTTCCTGTACCCCCCCCCAAGTCTGGGAGGAGTGTGCGTGGTT
GTGGACACGTGAGGAGGAGCTGAAAAAGTGCAGGAACATGCGGAGGAGCG
GGTGCCTGGGGGAGATAGATCGAGGAAGAAAGAAAGAGGCTGGGATCCAG
ACACCCTTTGAACGACCGCCACACCGCTTGTTCCTCGGGGCATGTCGATG
GGCGTCGCCTCTGAACACCTTCCC
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Coding sequence (CDS) from alignment at KK037250.1:523311..524634-

>rna8938 ID=rna8938|Name=rna8938|organism=Nannochloropsis gaditana|type=CDS|length=981bp|location=Sequence derived from alignment at KK037250.1:523311..524634- (Nannochloropsis gaditana)
CGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATGGATGTAT
GACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTACTGAAGGA
GGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATACGGTGCGA
CCACTCGCTAGGTGCACCGTGCTGTGGCATATTTTCCATCATCGGCTTCC
TCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTATCTTCGTG
CATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTACGGAGGCGA
TGGCGCTACCATGCACGACTGAGTGCTCGGGTATTTACGCGGGCACCCTT
GCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGGAGCACCG
GGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCTCTCAACA
TCCAGCGACCAGGATCATACGGTGCGACCACTCGCTAGGTGCACCGTGCT
GTGGCATATTTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATA
ATTGTTGACAAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAG
ATCAGCCGTGGCCTGTTACGGAGGCGATGGCGCTACCATGCACGACTGAG
TGCTCGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATGGAT
GTATGACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTACTGA
AGGAGGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATACGGT
GCGACCACTCGCTAGGTGCACCGTGCTGTGGCATATTTTCCATCATCGGC
TTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTATCTT
CGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTACGGAG
GCGATGGCGCTACCATGCACGACTGAGTGCT
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Synonyms
Publications