rna8898, rna8898 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8898
Unique Name	rna8898
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1171
Alignment location	KK037250.1:419091..421445 +

Link to JBrowse

Properties


Property Name	Value
Product	Sugar fermentation stimulation protein
Orig transcript id	gnl\|cribi\|Naga_100065g24.7391.mrna
Orig protein id	gnl\|cribi\|Naga_100065g24.7391
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:419091..421445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g24	gene8627	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8898	rna8898-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21800.1	cds8868	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:419091..421445+
coding sequence from alignment at KK037250.1:419091..421445+

mRNA sequence

>rna8898 ID=rna8898|Name=rna8898|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp
GAGGTGGGGATGGACTCTCTCTGAGCCTTCTTGCCCGTCCTAGGTCCCCT
CGGCAACGAGCATCCTCATATTGCCCTGTTTGGTATTCCAATCCTCTGCA
ACTCCTCTATCACTACAGTATCCTATGGGAAAGAAGTCCGACGTGGTTTT
GCCTGCTCGCGAGTACGCCCCTTTGGAGGCGCGGACGGATATTGTTGCTT
GGACCAAGGGAAGAGAGGCTCGGTAAGTCGAAGCTTGCGTTGACATAACA
TAGATGCCTTCAGGCCCACACGGCCTTCTCTACATATAGCAGTCTTCTGA
TACAAGAGAATGTATTGCGGTTGTCTGATTTTTCCTCATATGCGCCACTC
TTTAACGGGTGCAGGAGTTGGGGTGCAGGAGTTTTGAGGCAACGACATTG
ATGCGTGTCGTGGCAGGGCTTATCTTTCATTTTAGGGGTCTATTCACCTG
TCAATCCGCGTATTACCACAAATCCACATATCAGAGCACGAGAAGAGGCG
ATTGCTATCGAAATGGTGAAGAATTTGCGCGATCAAGTGTCCTGGTGCCA
ACGCAAGCACCCGGTTACTCATTATTATGATTGCGCCGAGCTGGTGGGAA
AGTACTTAAAGCTCGTCAGGGATCCTTTGCGCGGCGTAAAGCTACCAGGC
GCTGCATCCGAAGAATGAGAAATGAAACAAGAGCTCTTGGGTCTTGAGGA
TGACGCGGGAGGCTTCAGCACCGAAGGAGGGCCAAGGGGGAAAGCGCGGG
GGATGGGGAGGGAGCCGAAGAACGAAGACACCATGTAGAACCGTTGCCGC
GAAGCGCTTCACGATGATAATATTGTCGGATTGTTTTAGGACGTCACTTT
GTTACCAAGATGCTATCATTTGTTCACGAGCGGCACATCTTATAAACAGC
CTTGGCATCTCTGCCTGTCATGCGCCTCCGCACGAATGCCGTCGTCCTCC
TCCCGGTCCCCTTACAGCGAAACTATCATATGAATTGCCGGCTTCAGTTC
AATAGGTCATCCTATTTACCTTGCTATTGCCTCAGTATCCCGAATTTTTC
ACGCGGGGCAGCCCCGGGTCTCTACAATACTGTACTAAGCGAAATTATCC
TACATATCGTGGCTTCACAACAATACCTGCAAAGCTGTACATCACGAATG
AATCGAAATTTTAAACAAATT

protein sequence of rna8898

>rna8898-protein ID=rna8898-protein|Name=rna8898|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MRAAALGPCVFLLATTTPSIGLIFSGRVVASTARVRRSISCMPATPKARV
LVTCDRTRRSNAERDASSSEAGNPQTRCRKRDQVKIATVTAPAASDSFIG
NDDKSPAVTYRKTRTKVEVADQASTSSKCALTVASSQPTRKAKKGRRQAS
TASDKGVISKSARSRREVAIGETSIATTEVVEGDDQSRVPAPPSNAFNAT
SLMRASTDTASAASAVLLHTLPKLFTATVMHRTSKEVKSPYLCDIQLAGA
ETLTLCHTPSLGCSGLVTTGATILVSQSTSSTAKSSHVLHHVLQAEADGT
SHWVGTHPMTANVLAQALLEEGHVFPSLPRIETLRKEVTMGNSRFDFVAT
HADGSVTVVETKNVPVADNFDGTKKERAALLAACITPPDAYHKIAIFPDG
YRKKVSDPVSPRALKHVQELEAIAREGEKRACLLFISQRTDVASFVVTST
DMQYRTAVRKAGENGVVLKAFSVRWDGASGRAFLHRELPIVWDAEGE

mRNA from alignment at KK037250.1:419091..421445+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8898 ID=rna8898|Name=rna8898|organism=Nannochloropsis gaditana|type=mRNA|length=2355bp|location=Sequence derived from alignment at KK037250.1:419091..421445+ (Nannochloropsis gaditana)
GTGTCCGTCTCCCTGCGTGACAGGACCCGCTTACCATCCTCATTCAACAC
TCCGCCCAATGTCTTCACCTCCTGCTGAGCCGCTTTCAGTCGTGCGGTGA
GCCGCTGCGAGGTATCCTGAAGCTCTTTCTCTAGGTTGCCCCTGTATTCC
TTGGCGACGAGCTGGATTGGTGCCGCGGGGTCAGCTCGGTCCGTAGCTTT
GTGTTGCtggcccttgcctccttgccccgcTGGCCCGCGCCACTGGTCGC
ACAAAGTTTCCATTTCCAAGTTCGACTCCCGGGCTGTACGCATTTCACCa
tgctcctcgccctcttcggcatcctcttcgtcctgaAAATCACGCGCGGT
CGACAAAAGATCCCCCGGGCCCTCTAAGCTATTTTATGTCGTCGGGCCAT
AATGTGGGGGGTTAACGTGCCGTTACCATCTCTTTCGCCTACTCAGGGCA
CCCCGAAAACACATACCTGTTTCCCATGCCTACTGACGGTGATTTTATGT
GACCATCGTCGCTGGTGCCGTCGTCCATGgggcctgcttcccccccgggt
GCCGTGAGATGTCCCTTAAAGGCGGGTATCGCTTGCTCCTCTGTTGCTGT
cgcaggaggcggcagcgtAGGGGAACTAACGCGAATATAGATCAGCACGT
GGCGTGAACCCCGTGACCACACAACACATTTCACACAGTGCACTGATAGA
TGCGTGCTGCAGCCCTGGGGCCCTGTGTTTTTCTTCTCGCGACTACGACA
CCTAGTATTGGCCTTATTTTCTCAGGGAGAGTCGTTGCTTCCACCGCCAG
GGGTACGTAAGCCGGGTTACTTAAGCATGACGCAGCTCCATCCCTAGAAT
GCCACCGGCTTGTGATCAACTCGTCTCACGCCATTTCTCACGATTACACA
GTCCGGCGGTCAATCTCGTGCATGCCAGCCACGCCCAAAGCTAGGGTGCT
TGTGACTTGCGACAGGACTCGTCGCAGCAACGCAGAGAGAgacgcatcct
cctccgaggcTGGAAACCCACAGACGCGCTGCCGCAAGCGCGATCAGGTC
AAAATTGCCACTGTGACAGCTCCCGCAGCATCTGATTCATTCATAGGTAA
CGACGACAAGTCGCCAGCTGTCACTTATCGCAAGACAAGGACGAAGGTTG
AGGTCGCGGACCaggcctcgacctcctccaaatgCGCGCTGACGGTAGCA
TCTTCACAACCCACCCGAAAGgccaagaaggggagaagacaggCCTCAAC
GGCCAGCGACAAAGGTGTGATATCAAAATCGGCACGTTCAAGAAGAGAAG
TGGCCATAGGCGAGACCTCGATTGCCACGACGGAAGTGGTCGAGGGGGAC
GACCAAAGCcgcgtccctgccccgcccagCAATGCTTTCAACGCGACTAG
TCTTATGCGTGCCAGCACGGATACTGCCAGTGCTGCATCTGCGGTCTTGC
TTCACACCCTACCGAAGCTTTTCACGGCCACAGTCATGCACCGTACGTCC
AAAGAAGTAAAGTCGCCCTACCTGTGCGACATTCAGCTCGCAGGCGCGGA
GACACTGACCCTGTGCCACACTCCCAGCCTGGGCTGCAGCGGGCTCGTCA
CAACGGGAGCGACCATTCTGGTCAGTCAGTCCACGTCGAGCACGGCGAAA
TCCTCCCACGTCCTGCACCACGTGCTCCAGGCGGAGGCTGACGGCACGAG
CCACTGGGTCGGCACCCACCCCATGACCGCGAacgtcctcgcccaggccc
tcttggaagaggggcatgtcttcccctccctgccgcgcATCGAGACGCTG
CGGAAGGAGGTCACCATGGGAAATTCCCGCTTTGATTTTGTGGCTACCCA
TGCGGATGGCAGCGTCACGGTGGTGGAGACCAAAAATGTGCCGGTGGCGG
ATAATTTCGACGGGACCAAGAAAGAACGAGCAGCCTTGTTAGCAGCCTGC
ATTACGCCTCCAGACGCCTACCATAAGATCGCCATATTTCCTGACGGGTA
CAGGAAGAAAGTGAGCGACCCCGTTTCTCCCCGTGCCTTGAAGCATGTGC
AAGAATTGGAGGCTATTGCtcgagaaggggaaaagcgtGCCTGTCTCCTC
TTTATCTCGCAACGGACAGACGTCGCGTCTTTTGTAGTGACTTCAACTGA
TATGCAGTACCGCACGGCCGTTCgaaaggcaggagagaaTGGAGTGGTGC
TGAAGGCTTTCAGCGTGCGTTGGGACGGGGCCAGTGGGAGGGCATTTCTG
CACAGAGAGCTTCCCATTGTCTGGGATGCGGAAGGCGAATGAACCATAAA
TATCTCGAGAAAGAAATAATTTCGTGAACTCATGCACCATGAGTGCTTAT
CACAG

Coding sequence (CDS) from alignment at KK037250.1:419091..421445+

>rna8898 ID=rna8898|Name=rna8898|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at KK037250.1:419091..421445+ (Nannochloropsis gaditana)
ATGCGTGCTGCAGCCCTGGGGCCCTGTGTTTTTCTTCTCGCGACTACGAC
ACCTAGTATTGGCCTTATTTTCTCAGGGAGAGTCGTTGCTTCCACCGCCA
GGGTCCGGCGGTCAATCTCGTGCATGCCAGCCACGCCCAAAGCTAGGGTG
CTTGTGACTTGCGACAGGACTCGTCGCAGCAACGCAGAGAGAgacgcatc
ctcctccgaggcTGGAAACCCACAGACGCGCTGCCGCAAGCGCGATCAGG
TCAAAATTGCCACTGTGACAGCTCCCGCAGCATCTGATTCATTCATAGGT
AACGACGACAAGTCGCCAGCTGTCACTTATCGCAAGACAAGGACGAAGGT
TGAGGTCGCGGACCaggcctcgacctcctccaaatgCGCGCTGACGGTAG
CATCTTCACAACCCACCCGAAAGgccaagaaggggagaagacaggCCTCA
ACGGCCAGCGACAAAGGTGTGATATCAAAATCGGCACGTTCAAGAAGAGA
AGTGGCCATAGGCGAGACCTCGATTGCCACGACGGAAGTGGTCGAGGGGG
ACGACCAAAGCcgcgtccctgccccgcccagCAATGCTTTCAACGCGACT
AGTCTTATGCGTGCCAGCACGGATACTGCCAGTGCTGCATCTGCGGTCTT
GCTTCACACCCTACCGAAGCTTTTCACGGCCACAGTCATGCACCGTACGT
CCAAAGAAGTAAAGTCGCCCTACCTGTGCGACATTCAGCTCGCAGGCGCG
GAGACACTGACCCTGTGCCACACTCCCAGCCTGGGCTGCAGCGGGCTCGT
CACAACGGGAGCGACCATTCTGGTCAGTCAGTCCACGTCGAGCACGGCGA
AATCCTCCCACGTCCTGCACCACGTGCTCCAGGCGGAGGCTGACGGCACG
AGCCACTGGGTCGGCACCCACCCCATGACCGCGAacgtcctcgcccaggc
cctcttggaagaggggcatgtcttcccctccctgccgcgcATCGAGACGC
TGCGGAAGGAGGTCACCATGGGAAATTCCCGCTTTGATTTTGTGGCTACC
CATGCGGATGGCAGCGTCACGGTGGTGGAGACCAAAAATGTGCCGGTGGC
GGATAATTTCGACGGGACCAAGAAAGAACGAGCAGCCTTGTTAGCAGCCT
GCATTACGCCTCCAGACGCCTACCATAAGATCGCCATATTTCCTGACGGG
TACAGGAAGAAAGTGAGCGACCCCGTTTCTCCCCGTGCCTTGAAGCATGT
GCAAGAATTGGAGGCTATTGCtcgagaaggggaaaagcgtGCCTGTCTCC
TCTTTATCTCGCAACGGACAGACGTCGCGTCTTTTGTAGTGACTTCAACT
GATATGCAGTACCGCACGGCCGTTCgaaaggcaggagagaaTGGAGTGGT
GCTGAAGGCTTTCAGCGTGCGTTGGGACGGGGCCAGTGGGAGGGCATTTC
TGCACAGAGAGCTTCCCATTGTCTGGGATGCGGAAGGCGAATGAATGCGT
GCTGCAGCCCTGGGGCCCTGTGTTTTTCTTCTCGCGACTACGACACCTAG
TATTGGCCTTATTTTCTCAGGGAGAGTCGTTGCTTCCACCGCCAGGGTCC
GGCGGTCAATCTCGTGCATGCCAGCCACGCCCAAAGCTAGGGTGCTTGTG
ACTTGCGACAGGACTCGTCGCAGCAACGCAGAGAGAgacgcatcctcctc
cgaggcTGGAAACCCACAGACGCGCTGCCGCAAGCGCGATCAGGTCAAAA
TTGCCACTGTGACAGCTCCCGCAGCATCTGATTCATTCATAGGTAACGAC
GACAAGTCGCCAGCTGTCACTTATCGCAAGACAAGGACGAAGGTTGAGGT
CGCGGACCaggcctcgacctcctccaaatgCGCGCTGACGGTAGCATCTT
CACAACCCACCCGAAAGgccaagaaggggagaagacaggCCTCAACGGCC
AGCGACAAAGGTGTGATATCAAAATCGGCACGTTCAAGAAGAGAAGTGGC
CATAGGCGAGACCTCGATTGCCACGACGGAAGTGGTCGAGGGGGACGACC
AAAGCcgcgtccctgccccgcccagCAATGCTTTCAACGCGACTAGTCTT
ATGCGTGCCAGCACGGATACTGCCAGTGCTGCATCTGCGGTCTTGCTTCA
CACCCTACCGAAGCTTTTCACGGCCACAGTCATGCACCGTACGTCCAAAG
AAGTAAAGTCGCCCTACCTGTGCGACATTCAGCTCGCAGGCGCGGAGACA
CTGACCCTGTGCCACACTCCCAGCCTGGGCTGCAGCGGGCTCGTCACAAC
GGGAGCGACCATTCTGGTCAGTCAGTCCACGTCGAGCACGGCGAAATCCT
CCCACGTCCTGCACCACGTGCTCCAGGCGGAGGCTGACGGCACGAGCCAC
TGGGTCGGCACCCACCCCATGACCGCGAacgtcctcgcccaggccctctt
ggaagaggggcatgtcttcccctccctgccgcgcATCGAGACGCTGCGGA
AGGAGGTCACCATGGGAAATTCCCGCTTTGATTTTGTGGCTACCCATGCG
GATGGCAGCGTCACGGTGGTGGAGACCAAAAATGTGCCGGTGGCGGATAA
TTTCGACGGGACCAAGAAAGAACGAGCAGCCTTGTTAGCAGCCTGCATTA
CGCCTCCAGACGCCTACCATAAGATCGCCATATTTCCTGACGGGTACAGG
AAGAAAGTGAGCGACCCCGTTTCTCCCCGTGCCTTGAAGCATGTGCAAGA
ATTGGAGGCTATTGCtcgagaaggggaaaagcgtGCCTGTCTCCTCTTTA
TCTCGCAACGGACAGACGTCGCGTCTTTTGTAGTGACTTCAACTGATATG
CAGTACCGCACGGCCGTTCgaaaggcaggagagaaTGGAGTGGTGCTGAA
GGCTTTCAGCGTGCGTTGGGACGGGGCCAGTGGGAGGGCATTTCTGCACA
GAGAGCTTCCCATTGTCTGGGATGCGGAAGGCGAATGA

Synonyms

Publications