EWM21825.1, cds8837 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21825.1
Unique Name	cds8837
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:346397..346449 -
Alignment location	KK037250.1:346046..346172 -
Alignment location	KK037250.1:345812..345913 -
Alignment location	KK037250.1:345382..345656 -
Alignment location	KK037250.1:345130..345202 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21825.1
Product	rab7 family gtpase
Orig transcript id	gnl\|cribi\|Naga_100051g22.8864.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:346397..346449 -
KK037250.1	supercontig	KK037250.1:346046..346172 -
KK037250.1	supercontig	KK037250.1:345812..345913 -
KK037250.1	supercontig	KK037250.1:345382..345656 -
KK037250.1	supercontig	KK037250.1:345130..345202 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding
GO:0003924	GTPase activity
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0015031	protein transport
GO:0006913	nucleocytoplasmic transport
GO:0007165	signal transduction
GO:0006886	intracellular protein transport
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR003579	Small_GTPase_Rab_type
IPR020849	Small_GTPase_Ras
IPR002041	Ran_GTPase
IPR003578	Small_GTPase_Rho
IPR001806	Small_GTPase

Homology

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|585102167|gb|EWM21825.1| (rab7 family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 4.230e-156
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC
Sbjct:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|676396773|ref|XP_009041664.1| (hypothetical protein AURANDRAFT_59604 [Aureococcus anophagefferens] >gi|323447751|gb|EGB03662.1| hypothetical protein AURANDRAFT_59604 [Aureococcus anophagefferens])

HSP 1 Score: 297.745 bits (761), Expect = 3.175e-100
Identity = 148/208 (71.15%), Postives = 166/208 (79.81%), Query Frame = 0

Query:    3 HRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDD-KLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            HRKKVL K IILGDSGVGKT LMNQYV KRF  +YKATIGADFLTK+VMIDD KLVTLQIWDTAGQE+FQSLG AFYRGAD C+LVYD+T PKSFDNL+ WR +FL  ASPPD +NFPFIVLGNK D E DR+V K KA +W KSK   PL YFETSAK+A +VEAAF EAAQLAL Q + E  D+ P+TINL  P+    A+ + CC
Sbjct:    2 HRKKVLLKVIILGDSGVGKTALMNQYVNKRFSASYKATIGADFLTKEVMIDDDKLVTLQIWDTAGQERFQSLGVAFYRGADACILVYDITQPKSFDNLDSWREEFLVQASPPDIENFPFIVLGNKVDRENDRRVSKAKAHSWCKSKSSAPLQYFETSAKEAVQVEAAFQEAAQLALSQENTEA-DFLPETINLGVPSAGGVAK-SSCC 207

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|299116473|emb|CBN76190.1| (Rab7, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 287.345 bits (734), Expect = 6.178e-96
Identity = 134/213 (62.91%), Postives = 164/213 (77.00%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDD-YFPDTINLSQ---PATRRSAEPAGCC 209
            MA R++ L K IILGDSGVGKT LMNQYV KRF   YKATIGADFLTKD +IDDKLVTLQIWDTAGQE+FQSLG AFYRGA+ C+LVYD+TNPKSF+ L+ WR +FLH A+P DPDNFPF+++GNK D E++R+V + +AL W KSKG  P+ Y ETSAK+A +VE AFLE  Q+AL   +Q+  + Y P+ I LSQ   P   +S+  + CC
Sbjct:    1 MASRRRALLKIIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKDTVIDDKLVTLQIWDTAGQERFQSLGVAFYRGAEACVLVYDITNPKSFEQLDSWREEFLHQAAPMDPDNFPFVLIGNKVDRESERRVSRQRALQWCKSKGSTPISYIETSAKEAVKVEGAFLEVVQMALINSAQQPPEIYVPEPITLSQAQTPYQSQSSVDSMCC 213

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|1214705557|gb|OWZ17234.1| (Rab7 family GTPase [Phytophthora megakarya])

HSP 1 Score: 281.182 bits (718), Expect = 1.137e-93
Identity = 138/210 (65.71%), Postives = 162/210 (77.14%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKG-PKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D EADR+V K KA  W +SK   +P+ +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS   ++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKEADRRVHKEKAQEWCRSKNVQQPIQHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTTSKR--ESSSCC 207

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|566017189|gb|ETI40100.1| (hypothetical protein F443_14406 [Phytophthora parasitica P1569] >gi|567954568|gb|ETK80201.1| hypothetical protein L915_14048 [Phytophthora parasitica] >gi|567983229|gb|ETL33625.1| hypothetical protein L916_13944 [Phytophthora parasitica] >gi|568042755|gb|ETM40073.1| hypothetical protein L914_13864 [Phytophthora parasitica] >gi|570320860|gb|ETO68808.1| hypothetical protein F444_14405 [Phytophthora parasitica P1976] >gi|570944663|gb|ETP09920.1| hypothetical protein F441_14284 [Phytophthora parasitica CJ01A1] >gi|570976135|gb|ETP37996.1| hypothetical protein F442_14249 [Phytophthora parasitica P10297])

HSP 1 Score: 280.796 bits (717), Expect = 1.631e-93
Identity = 136/210 (64.76%), Postives = 163/210 (77.62%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKG-PKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E++R+V K +A  W +SK   +P+ +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS  A++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESERRVQKQRAQEWCRSKNVQQPIQHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTASKR--ESSSCC 207

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|675202309|ref|XP_008910039.1| (hypothetical protein PPTG_14474 [Phytophthora parasitica INRA-310] >gi|568012735|gb|ETL86912.1| hypothetical protein L917_13737 [Phytophthora parasitica] >gi|568089805|gb|ETN04645.1| hypothetical protein PPTG_14474 [Phytophthora parasitica INRA-310])

HSP 1 Score: 279.641 bits (714), Expect = 4.984e-93
Identity = 136/210 (64.76%), Postives = 162/210 (77.14%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKG-PKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E+ R+V K +A  W +SK   +P+ +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS  A++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESGRRVQKQRAQEWCRSKNVQQPIQHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTASKR--ESSSCC 207

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|695374126|ref|XP_009515216.1| (hypothetical protein PHYSODRAFT_284160 [Phytophthora sojae] >gi|348688127|gb|EGZ27941.1| hypothetical protein PHYSODRAFT_284160 [Phytophthora sojae])

HSP 1 Score: 278.87 bits (712), Expect = 8.522e-93
Identity = 135/210 (64.29%), Postives = 163/210 (77.62%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKG-PKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E++R+V K K+  W +SK   +P+ +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS  +++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESERRVRKEKSQEWCRSKNVQQPIQHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTSSKR--ESSSCC 207

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|566017190|gb|ETI40101.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567954569|gb|ETK80202.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567983230|gb|ETL33626.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568042756|gb|ETM40074.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570320861|gb|ETO68809.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570944664|gb|ETP09921.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570976136|gb|ETP37997.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 276.559 bits (706), Expect = 7.339e-92
Identity = 135/209 (64.59%), Postives = 161/209 (77.03%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E++R+V K +A  W +SK  +   +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS  A++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESERRVQKQRAQEWCRSKNVQ--QHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTASKR--ESSSCC 204

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|301117014|ref|XP_002906235.1| (Rab7 family GTPase, putative [Phytophthora infestans T30-4] >gi|262107584|gb|EEY65636.1| Rab7 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 276.174 bits (705), Expect = 1.033e-91
Identity = 132/210 (62.86%), Postives = 164/210 (78.10%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKG-PKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E++R+V K +A  W +SK   +P+ +FETSAK+AT VE AF   A  AL++   ++D Y P+TI+LS  +++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESERRVQKQRAQEWCRSKNVQQPIQHFETSAKEATSVEEAFQTIASSALQK--GQEDIYVPETIDLSGTSSKR--ESSSCC 206

[Close]

BLAST of EWM21825.1 vs. NCBI_GenBank
Match: gi|675202311|ref|XP_008910040.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568012736|gb|ETL86913.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568089806|gb|ETN04646.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 275.404 bits (703), Expect = 2.031e-91
Identity = 135/209 (64.59%), Postives = 160/209 (76.56%), Query Frame = 0

Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
            M+HRKKVL K IILGDSGVGKT LMNQYV ++F   YKATIGADFLTK++M+DDKLVT+QIWDTAGQE+FQSLG AFYRGAD C+LVYD+TNPKSF+ L+ WR +FL  A P DPD FPFIVLGNK D E+ R+V K +A  W +SK  +   +FETSAK+AT VE AF   A  AL Q  QE D Y P+TI+LS  A++R  E + CC
Sbjct:    1 MSHRKKVLLKLIILGDSGVGKTSLMNQYVNQKFSNQYKATIGADFLTKEIMLDDKLVTMQIWDTAGQERFQSLGVAFYRGADACVLVYDITNPKSFEKLDTWRDEFLAQAGPRDPDAFPFIVLGNKVDKESGRRVQKQRAQEWCRSKNVQ--QHFETSAKEATSVEEAFQTIASSAL-QKGQEDDIYVPETIDLSGTASKR--ESSSCC 204

The following BLAST results are available for this feature:

BLAST of EWM21825.1 vs. NCBI_GenBank

BLAST of EWM21825.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102167\|gb\|EWM21825.1\|	4.230e-156	100.00	rab7 family gtpase [Nannochloropsis gaditana]	[more]
gi\|676396773\|ref\|XP_009041664.1\|	3.175e-100	71.15	hypothetical protein AURANDRAFT_59604 [Aureococcus...	[more]
gi\|299116473\|emb\|CBN76190.1\|	6.178e-96	62.91	Rab7, RAB family GTPase [Ectocarpus siliculosus]	[more]
gi\|1214705557\|gb\|OWZ17234.1\|	1.137e-93	65.71	Rab7 family GTPase [Phytophthora megakarya]	[more]
gi\|566017189\|gb\|ETI40100.1\|	1.631e-93	64.76	hypothetical protein F443_14406 [Phytophthora para...	[more]
gi\|675202309\|ref\|XP_008910039.1\|	4.984e-93	64.76	hypothetical protein PPTG_14474 [Phytophthora para...	[more]
gi\|695374126\|ref\|XP_009515216.1\|	8.522e-93	64.29	hypothetical protein PHYSODRAFT_284160 [Phytophtho...	[more]
gi\|566017190\|gb\|ETI40101.1\|	7.339e-92	64.59	hypothetical protein, variant 1 [Phytophthora para...	[more]
gi\|301117014\|ref\|XP_002906235.1\|	1.033e-91	62.86	Rab7 family GTPase, putative [Phytophthora infesta...	[more]
gi\|675202311\|ref\|XP_008910040.1\|	2.031e-91	64.59	hypothetical protein, variant 1 [Phytophthora para...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8867	rna8867	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications