EWM21826.1, cds8835 (CDS) Nannochloropsis gaditana

Overview
NameEWM21826.1
Unique Namecds8835
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:340346..340520 -
Alignment locationKK037250.1:339719..340224 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21826.1
Productmitochondrial inner membrane protease atp23
Orig transcript idgnl|cribi|Naga_100051g19.8865.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:340346..340520 -
KK037250.1supercontigKK037250.1:339719..340224 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR019165Peptidase_M76_ATP23
Homology
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|585102168|gb|EWM21826.1| (mitochondrial inner membrane protease atp23 [Nannochloropsis gaditana])

HSP 1 Score: 475.707 bits (1223), Expect = 5.581e-170
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MTDGDDSLKRSQPNSHPAASTSSQSPPPHKGASRYAIRLFGPKDDHSICKLYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            MTDGDDSLKRSQPNSHPAASTSSQSPPPHKGASRYAIRLFGPKDDHSICKLYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP
Sbjct:    1 MTDGDDSLKRSQPNSHPAASTSSQSPPPHKGASRYAIRLFGPKDDHSICKLYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|570981362|gb|ETP41794.1| (hypothetical protein F442_11208 [Phytophthora parasitica P10297])

HSP 1 Score: 155.606 bits (392), Expect = 4.608e-44
Identity = 77/182 (42.31%), Postives = 116/182 (63.74%), Query Frame = 0
Query:   46 HSICKLYTEKA-KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C+   EKA  K  RV+ LV A+  +GC+++        +C     GGF  +  G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ C RRRA+LS++  ++CK RA E IEKVF  CY+D +PY +IP
Sbjct:   22 HQECEDMREKALTKCSRVKFLVDAMEKMGCSLE-PGFFSSVECEGKINGGFHLDDDG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVSKQHQLCTRRRAKLSIEQNDACKGRADECIEKVFDSCYRDWSPYREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|695372696|ref|XP_009514877.1| (hypothetical protein PHYSODRAFT_539065 [Phytophthora sojae] >gi|348687788|gb|EGZ27602.1| hypothetical protein PHYSODRAFT_539065 [Phytophthora sojae])

HSP 1 Score: 154.451 bits (389), Expect = 1.263e-43
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 0
Query:   46 HSICKLYTEKA-KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C+   EKA  K  RV+ LV A+  +GC+++         C     GGF  + +G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ C RRRA+LS++  ++CK +A E I+KVF  CY+D +PY +IP
Sbjct:   22 HQKCEDMREKALTKCSRVKFLVNAMEKMGCSLE-PGFFSSVDCEGKINGGFHLDDEG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRNNFNVSKQHQLCTRRRAKLSIEQNDTCKGKADECIDKVFDSCYRDWSPYREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|675196833|ref|XP_008907301.1| (hypothetical protein PPTG_13411 [Phytophthora parasitica INRA-310] >gi|566020992|gb|ETI43903.1| hypothetical protein F443_11301 [Phytophthora parasitica P1569] >gi|567958362|gb|ETK83951.1| hypothetical protein L915_11012 [Phytophthora parasitica] >gi|568016350|gb|ETL90527.1| hypothetical protein L917_10816 [Phytophthora parasitica] >gi|568046691|gb|ETM43796.1| hypothetical protein L914_10850 [Phytophthora parasitica] >gi|568092739|gb|ETN07544.1| hypothetical protein PPTG_13411 [Phytophthora parasitica INRA-310] >gi|570324610|gb|ETO72558.1| hypothetical protein F444_11367 [Phytophthora parasitica P1976] >gi|570948470|gb|ETP13727.1| hypothetical protein F441_11221 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 154.451 bits (389), Expect = 1.407e-43
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 0
Query:   46 HSICKLYTEKA-KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C+   EKA  K  RV+ LV A+  +GC+++        +C     GGF  +  G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ C RRRA+LS++  ++CK RA E I+KVF  CY+D +PY +IP
Sbjct:   22 HQECEDMREKALTKCSRVKFLVDAMEKMGCSLE-PGFFSSVECEGKINGGFHLDDDG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVSKQHQLCTRRRAKLSIEQNDACKGRADECIDKVFDSCYRDWSPYREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|301093688|ref|XP_002997689.1| (mitochondrial inner membrane protease ATP23 [Phytophthora infestans T30-4] >gi|262109938|gb|EEY67990.1| mitochondrial inner membrane protease ATP23 [Phytophthora infestans T30-4])

HSP 1 Score: 154.066 bits (388), Expect = 1.551e-43
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 0
Query:   46 HSICKLYTEKA-KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C+   EKA  K  RV+ LV A+  +GC+++        +C     GGF  + +G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ C RRRA+LS++   +CK RA E I+KVF  CY+D +PY +IP
Sbjct:   22 HQKCEDMREKALTKCSRVKFLVDAMEKIGCSLE-PVFFSSVKCEGKINGGFHLDDEG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVSKQHQLCTRRRAKLSIEQNGACKGRADECIDKVFDSCYRDWSPYREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|813150903|ref|XP_012201098.1| (hypothetical protein SPRG_06329 [Saprolegnia parasitica CBS 223.65] >gi|641534325|gb|KDO28278.1| hypothetical protein SPRG_06329 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 152.91 bits (385), Expect = 4.364e-43
Identity = 72/178 (40.45%), Postives = 113/178 (63.48%), Query Frame = 0
Query:   50 KLYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQ-SCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            ++  +   K  +V+ LV  +  +GC ID  T  + + CN    GGF  N  G       P +V+C++++    ++ +T+AHEL+HA+D CRA +NW+  C  +AC+EIRA+ LSG+CD+  E  RG+F +  QHQECVRRRA LS+Q    C+ + ++ +EKVF+ CY+DT P+ ++P
Sbjct:   27 EMRAQSLAKCSKVQFLVEIMDRMGCKIDPKTFFKSQHCNGNINGGFSLNEDG------SPSVVLCQNHIQDQEWMDRTVAHELIHAFDHCRANINWERDCDQHACSEIRAAALSGDCDWKFEVMRGHFSIPKQHQECVRRRAVLSLQYNPMCQGKEEKCVEKVFETCYKDTLPFPEMP 198          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|669139984|ref|XP_008605560.1| (hypothetical protein SDRG_01788 [Saprolegnia diclina VS20] >gi|530742474|gb|EQC40716.1| hypothetical protein SDRG_01788 [Saprolegnia diclina VS20])

HSP 1 Score: 152.525 bits (384), Expect = 6.732e-43
Identity = 72/178 (40.45%), Postives = 112/178 (62.92%), Query Frame = 0
Query:   50 KLYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQ-SCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            ++  +   K  +V+ LV  +  +GC ID  T  + + CN    GGF  N  G       P +V+C++++    ++ +T+AHEL+HA+D CRA +NW+  C  +AC+EIRA+ LSG+CD+  E  RG+F +  QHQECVRRRA LS+Q    C+ +  + +EKVF+ CY+DT P+ ++P
Sbjct:   27 EMRAQSLAKCSKVQFLVEIMDRMGCKIDPKTFFKSQHCNGNINGGFSLNEDG------SPSVVLCQNHIQDQEWMDRTVAHELIHAFDHCRANINWERDCDQHACSEIRAAALSGDCDWKFEVMRGHFSIPKQHQECVRRRAVLSLQYNPMCQGKEDKCVEKVFETCYKDTLPFPEMP 198          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|567987052|gb|ETL37366.1| (hypothetical protein L916_10911 [Phytophthora parasitica])

HSP 1 Score: 151.369 bits (381), Expect = 2.205e-42
Identity = 75/182 (41.21%), Postives = 115/182 (63.19%), Query Frame = 0
Query:   46 HSICKLYTEKA-KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C+   EKA  K  RV+ LV A+  +GC+++        +C     GGF  +  G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ C  RRA+LS++  ++CK RA E I+KVF  CY+D +PY +IP
Sbjct:   22 HQECEDMREKALTKCSRVKFLVDAMEKMGCSLE-PGFFSSVECEGKINGGFHLDDDG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVSKQHQLCTGRRAKLSIEQNDACKGRADECIDKVFDSCYRDWSPYREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|953492458|emb|CEG45046.1| (mitochondrial inner membrane protease atp23 [Plasmopara halstedii])

HSP 1 Score: 150.599 bits (379), Expect = 3.513e-42
Identity = 73/182 (40.11%), Postives = 113/182 (62.09%), Query Frame = 0
Query:   46 HSICKLYTEKAKKT-PRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            H  C++  E ++K   RV  L+  +  +GCTI          C+    GGF  + +G      +P +V+C++++    ++ +T+AHEL+HA+D CR K++W  C H+AC+EIRA+ LSG+C++  EF R NF +  QHQ CVRRRA LS++  E+C   A E I+KVF  CY+D +P+ +IP
Sbjct:   22 HQKCEMMRESSQKNCSRVMFLMDTMEKMGCTIR-KGFFSSISCDKNINGGFHVDDEG------KPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVSKQHQLCVRRRAALSIEQNEACTGTANECIDKVFDSCYRDWSPFREIP 196          
BLAST of EWM21826.1 vs. NCBI_GenBank
Match: gi|1173951969|gb|OQR99734.1| (mitochondrial inner membrane protease ATP23 [Achlya hypogyna])

HSP 1 Score: 149.828 bits (377), Expect = 7.212e-42
Identity = 70/171 (40.94%), Postives = 110/171 (64.33%), Query Frame = 0
Query:   57 KKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQ-SCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
            +K  +V+ LV  +  +GC I+  T  + + CN    GGF  N  G       P +V+C++++    ++ +T+AHEL+HA+D CRAK++W+  C  +AC+EIRA+ LSG+CD+  E  RG+F +  QHQECVRRRA LS+Q    C+ +  + ++KVF  CY+DT P+ ++P
Sbjct:   34 QKCSKVQFLVEIMDRMGCKINPQTFFKAQHCNGNINGGFSLNEDG------SPSVVLCQNHIQDQEWMDRTMAHELIHAFDHCRAKIDWERDCDQHACSEIRAAALSGDCDWKYEVLRGHFSIPKQHQECVRRRAILSLQFNPMCEGKEAKCVDKVFDTCYKDTLPFPEMP 198          
The following BLAST results are available for this feature:
BLAST of EWM21826.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102168|gb|EWM21826.1|5.581e-170100.00mitochondrial inner membrane protease atp23 [Nanno... [more]
gi|570981362|gb|ETP41794.1|4.608e-4442.31hypothetical protein F442_11208 [Phytophthora para... [more]
gi|695372696|ref|XP_009514877.1|1.263e-4341.21hypothetical protein PHYSODRAFT_539065 [Phytophtho... [more]
gi|675196833|ref|XP_008907301.1|1.407e-4341.76hypothetical protein PPTG_13411 [Phytophthora para... [more]
gi|301093688|ref|XP_002997689.1|1.551e-4341.76mitochondrial inner membrane protease ATP23 [Phyto... [more]
gi|813150903|ref|XP_012201098.1|4.364e-4340.45hypothetical protein SPRG_06329 [Saprolegnia paras... [more]
gi|669139984|ref|XP_008605560.1|6.732e-4340.45hypothetical protein SDRG_01788 [Saprolegnia dicli... [more]
gi|567987052|gb|ETL37366.1|2.205e-4241.21hypothetical protein L916_10911 [Phytophthora para... [more]
gi|953492458|emb|CEG45046.1|3.513e-4240.11mitochondrial inner membrane protease atp23 [Plasm... [more]
gi|1173951969|gb|OQR99734.1|7.212e-4240.94mitochondrial inner membrane protease ATP23 [Achly... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8865rna8865Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications