rna8865, rna8865 (mRNA) Nannochloropsis gaditana

Overview
Namerna8865
Unique Namerna8865
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1848
Alignment locationKK037250.1:339544..340783 -

Link to JBrowse

Properties
Property NameValue
Productmitochondrial inner membrane protease atp23
Orig transcript idgnl|cribi|Naga_100051g19.8865.mrna
Orig protein idgnl|cribi|Naga_100051g19.8865
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:339544..340783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g19gene8595Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8865rna8865-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21826.1cds8835Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8865 ID=rna8865|Name=rna8865|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp
TGCCAAATTTTACCATTGAAATGGCATGCTGCGCTTGTGGGCTTCTTTAG
AATGAATTTTGGCGGTACAGTCGCTGCATTTGTGGATTTACTTTCTGCCC
GGGGCGGAATTTCCGCGCTTGTTGCCCGGTCGAGCCAGCACTCTTCGTTC
TCTTCCGTCTCACCGTCTTAACCTGCCATCTCACTTTCCTCGACGTTCCT
CCAGCACCGCGAACATGGGTGGAGGCATAATAACCAAGAGTCTGGGACTA
CTATACCTTCTCTCCAGTGCAGAAGTCTTTGCTGCCGCTCGCAGAATTGA
CTCGACTGCGGCCGCGGACCTCTATAACGTGCATCAAGGCCACACTCATC
ATGGGGGATGCGCGCAAGACATGGTCCCCGGGGAGGCACCGGCGGCTTCC
TCGACCGAGGCCACGTCCCCCTTTGCCCGCCTCGCCCAAGGCATATGGGC
CCGGCGCCCCGGCTCTGCCTCTTGCGCTGGCTCGCCTTCCTCGATGGACA
GCAAGACATGCGGTAAAAAAGGGAACGAGTTGCATGCCGCTGCCCAGCGT
CTGATGGAGGCGCGAGGAGGGCAGGGCGCCCCTGGGGGAGGGGCTGGCGC
CGCATGCGGAGCGGGGGGCGTGACCACGTTTGGCATGTCCCTACCTTTTT
TCAAGATGTTCCTGCAGCTTCTATTGACCGGCCTGAACGTGGTCTGCTGG
CTGGTGCCCATGAAGATCAAGCGGTTCCGAGAGAACCAGGAGATGATCAG
CATGGCGAACGCCTTCAGCGGGGGCGTCTTCCTCTCCTTGGCCTTCGGGC
ACATGATTCCACACGCAGTGGAGGGCTTCGAGACGGCGAGCTTTGCGCAC
AACGTCCCTTTCTTTGTGACTCTGGCGGGCTACCTGCTCATCTTCTTCGT
CGAGAAGATCGCCTTCGACACGCACGCTCTCACTGACAACCACCACGAGC
ACCACCACGCGCTTCCTGCCCTCCCACCCGCCGACATAGCCGAGAAGACG
GCGCTCACGAATGGTGCGGTCCCTGAAAAAAGCACCGTCAGCAACAGCAG
ACTAGTCACTCCTCCCGCCAGCCCCCCCCCGACGGCCAGCGGTCGCTCGG
CCCTCGTCCTCCTCCTCGCCCTGGCGGTGCACTCCATCTTCGAGACCATG
GCCCTCGGGCTCTCGGACACCCCGCTCCAGGCAGGCTTGCTCGCCACCAG
CATCGCTCTGCACCAACCCGCGGAATCCATCGCCCTGCTCGTGGCCTTCC
TCAAGTCGGGCCTGACGGAGCAGCAGACGACAAGGTACCTCTCCCTCTTC
TCCGCTGTGGGTTTCCTGGGCGTCGTCCTGGGTCTCGCCGTCTCCTCCTG
GGCCTCGGCGGTGTGGGACTCGGTGTTCGTGGCACTCACGGCCGGGACCT
TCGTATACGTGGGATGCACGGAGATCGTGGCGGAGGAGTTCGAGGAAGGA
ACGCACAAGTGGAGGAAGTTTGGCGCTTTGTTGGCGGGCGTGCTCATTGT
GGGGGGCATAACTACTCTGACGGAGGGCTGGGAGCACTGAGGTAGACAGA
GGAGGGATGGAAAAGTGGCCTAGTGTAGATAAGGTACTGGGGGAGGGGGA
GTGGGCGGGGAGCGGACGCTGGCGACATGCTTTCTAGGGGGGCGCACTGA
CTGAGAGCTCGGACAAGCCTTTCCTGGTTGCTCTACGCGCAAGGGCTTTG
ATTTGACTGCGAAGCACATAAACATGTCGTGCGTTTTGCGAGGAAATGGG
AACCGCGTGCAGGAAAAAGGAGAGAAGAAAGAATCGCTCAAATACCAGTG
ATTTAGACACATCTCTCCGCACAATCATGGAGATAAATTCTTTGATGG
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protein sequence of rna8865

>rna8865-protein ID=rna8865-protein|Name=rna8865|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MTDGDDSLKRSQPNSHPAASTSSQSPPPHKGASRYAIRLFGPKDDHSICK
LYTEKAKKTPRVRELVGAISDLGCTIDIDTMVECRQCNIAATGGFIANHQ
GLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYH
YACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESC
KDRAKEVIEKVFKRCYQDTAPYDKIP
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mRNA from alignment at KK037250.1:339544..340783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8865 ID=rna8865|Name=rna8865|organism=Nannochloropsis gaditana|type=mRNA|length=1240bp|location=Sequence derived from alignment at KK037250.1:339544..340783- (Nannochloropsis gaditana)
CGACGCCACGCCCGCTCCTCTTTCAGTGGAAGTAGCACCTGACTCCTACG
CCATATCCGGGCAGGGCTGTCCAAACAGGATGATGGAGGCGAATATCGTG
GAGAAATAGCAACGAAATTGTTGAAGCCGTAAGGCATTGATCACAAGGCA
AAGTGTGCACGAATTCAGCTTTTGGTAGTAGGAGTAGGTGAGGGCAGGAG
GTTGGAGGTGTCGCGTTGTTCACTTGTCGGGCGCTTATCCATACCAGACA
GCAGCATCAAGCTATGACTGATGGCGACGATTCTCTCAAGAGGAGCCAGC
CAAATTCTCATCCTGCAGCCTCAACATCTTCCCAGTCACCACCCCCCCAC
AAAGGGGCCTCACGCTACGCAATCCGCCTTTTTGGACCCAAAGATGATCA
CAGTATTTGCAAGCTTTACACAGAGAAGGCCAAGAAAAGTGAGTTGTATC
GAATGCAGACTGTTGGGTCCTGACCCCATGCGTGCTTAGCGCCATCAAAT
TGGAGATATGTCTGCTTACCAACTCCTGCCTTGTGACCTCTTGTACAACA
AACTCACAGCTCCTCGTGTGCGGGAATTGGTTGGCGCCATATCGGACTTA
GGCTGCACGATTGACATTGACACGATGGTGGAGTGCCGTCAATGCAATAT
TGCGGCTACTGGAGGCTTCATTGCTAACCACCAGGGACTGAAGGAAGGGG
AGTACCGTCCACGGATCGTTGTGTGCGAAGATAACCTCCTGGGGTCACAT
TACGTTGCGCAGACCCTGGCACACGAGTTGGTGCATGCATACGATCAGTG
CCGGGCCAAAGTTAACTGGCAGAGCTGTTACCATTACGCGTGCACAGAGA
TTCGCGCCTCGACATTGAGCGGGGAATGCGACTTCATTGAAGAGTTCGAC
CGTGGAAATTTTGGCATGCGGGCTCAGCACCAGGAGTGCGTTCGTCGGCG
GGCGGAACTGTCGATGCAAGTGGCAGAATCGTGCAAGGACCGGGCGAAGG
AAGTCATTGAGAAAGTATTCAAACGCTGTTATCAGGATACCGCGCCGTAT
GACAAGATCCCTTGAGGAGCGGGGTGGAGGGCGGTAGGATGAGGCGCCAC
AAGGATCGGGGTGAACGGTGGTTGGAAGAGGAGCCGCAAGTAGAAAGGGC
CGAGTGGCAAGGAGGGTATGAAGCTCCCGAGAAAGTAAACGAGCTGAAGC
AGAATGCCATCAAAGAATTTATCTCCATGATTGTGCGGAG
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Coding sequence (CDS) from alignment at KK037250.1:339544..340783-

>rna8865 ID=rna8865|Name=rna8865|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at KK037250.1:339544..340783- (Nannochloropsis gaditana)
CTCCTCGTGTGCGGGAATTGGTTGGCGCCATATCGGACTTAGGCTGCACG
ATTGACATTGACACGATGGTGGAGTGCCGTCAATGCAATATTGCGGCTAC
TGGAGGCTTCATTGCTAACCACCAGGGACTGAAGGAAGGGGAGTACCGTC
CACGGATCGTTGTGTGCGAAGATAACCTCCTGGGGTCACATTACGTTGCG
CAGACCCTGGCACACGAGTTGGTGCATGCATACGATCAGTGCCGGGCCAA
AGTTAACTGGCAGAGCTGTTACCATTACGCGTGCACAGAGATTCGCGCCT
CGACATTGAGCGGGGAATGCGACTTCATTGAAGAGTTCGACCGTGGAAAT
TTTGGCATGCGGGCTCAGCACCAGGAGTGCGTTCGTCGGCGGGCGGAACT
GTCGATGCAAGTGGCAGAATCGTGCAAGGACCGGGCGAAGGAAGTCATTG
AGAAAGTATTCAAACGCTGTTATCAGGATACCGCGCCGTATGACAAGATC
CCTTGAATGACTGATGGCGACGATTCTCTCAAGAGGAGCCAGCCAAATTC
TCATCCTGCAGCCTCAACATCTTCCCAGTCACCACCCCCCCACAAAGGGG
CCTCACGCTACGCAATCCGCCTTTTTGGACCCAAAGATGATCACAGTATT
TGCAAGCTTTACACAGAGAAGGCCAAGAAAACTCCTCGTGTGCGGGAATT
GGTTGGCGCCATATCGGACTTAGGCTGCACGATTGACATTGACACGATGG
TGGAGTGCCGTCAATGCAATATTGCGGCTACTGGAGGCTTCATTGCTAAC
CACCAGGGACTGAAGGAAGGGGAGTACCGTCCACGGATCGTTGTGTGCGA
AGATAACCTCCTGGGGTCACATTACGTTGCGCAGACCCTGGCACACGAGT
TGGTGCATGCATACGATCAGTGCCGGGCCAAAGTTAACTGGCAGAGCTGT
TACCATTACGCGTGCACAGAGATTCGCGCCTCGACATTGAGCGGGGAATG
CGACTTCATTGAAGAGTTCGACCGTGGAAATTTTGGCATGCGGGCTCAGC
ACCAGGAGTGCGTTCGTCGGCGGGCGGAACTGTCGATGCAAGTGGCAGAA
TCGTGCAAGGACCGGGCGAAGGAAGTCATTGAGAAAGTATTCAAACGCTG
TTATCAGGATACCGCGCCGTATGACAAGATCCCTTGAATGACTGATGGCG
ACGATTCTCTCAAGAGGAGCCAGCCAAATTCTCATCCTGCAGCCTCAACA
TCTTCCCAGTCACCACCCCCCCACAAAGGGGCCTCACGCTACGCAATCCG
CCTTTTTGGACCCAAAGATGATCACAGTATTTGCAAGCTTTACACAGAGA
AGGCCAAGAAAA
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Synonyms
Publications