rna8849, rna8849 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8849
Unique Name	rna8849
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	664
Alignment location	KK037250.1:300808..301897 -

Link to JBrowse

Properties


Property Name	Value
Product	rna-binding musashi 2-like protein
Orig transcript id	gnl\|cribi\|Naga_100051g1.8861.mrna
Orig protein id	gnl\|cribi\|Naga_100051g1.8861
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:300808..301897 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g1	gene8579	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21822.1	cds8819	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8849	rna8849-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:300808..301897-
coding sequence from alignment at KK037250.1:300808..301897-

mRNA sequence

>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=mRNA|length=664bp
TACGGAGACTACTACAGCTCGGCCGGGTACTCCCAGCACCCGCACTACGG
CTCGTACCCCTCGCAGCACGGGAGCGCTTACAGCGACTACCCGCCCTCAG
GCGTGGCGGGGGGGCTACTCCTCCTCCTACGCGCATGGGGGGTACGCCCA
GAGCGGCAGCGTCCCTGCGGCGGTGGGAGTGCCTCCGCCCTCCATGGGCG
GGGGGGGGTCTGGAGGCTACAATGGGAGCCACGCCTCGCACTCTCAGGCC
CACGGCGTGCCTTCATCGGACTATGCAGCGGGTGGGGGGGGCGGATACGC
GCCACACCGAGGCCAGCATGCGCACCAGGGGCGAGTAGAGCGGAGTCACC
GCCCCTACTAGGGATGGGAGGGGGCGGGGAAGGGATCAGCCGATAAGGCG
GAGGGTGGGGGAGCGGGGAGGAAATGTTGGAAAATGAAAGGGAAGCGGGA
AGATGGACAAGGCAGGGTTGAGGGGAGTTGGGGTGTGCGAGGATCCTGGT
ATGCCTGTCAGTGTGTGTGAGTGAGAGAGTGTCGATTCTCAGCTGGAATG
GGGGAATCGTAAAGACGAAGAGGAGCTTGCCTTGCACGCAGCAACCGCAG
TAACGAAAGTGTTAGCGGCTCCTTCTATGAATTGAGGAGGAAAGAAGAGA
ATACACTATTAAAA

protein sequence of rna8849

>rna8849-protein ID=rna8849-protein|Name=rna8849|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVG
GVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAME
AAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKV
FVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEA
AMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWG
GARRRGGGIRGTITGTATAGGGATAPTVAERGGLRRGRIRVVVSGGGGYG
RGGG

mRNA from alignment at KK037250.1:300808..301897-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp|location=Sequence derived from alignment at KK037250.1:300808..301897- (Nannochloropsis gaditana)
GCTGCCTTGGTTTTGAGGGTCCCGGTGGGGACTGGACAGCTCAAGAAAGA
AAAAAGACGCGTTACCCCTGGTGCTGATGCATGTATCCCCTCCCCACCTC
CACCCAGGCAACACAGATCTTCCCAGAGCCAGACACACCGAGTCAGGGAG
CTCATCAGCACCACATAACGAGGCAGTATGGCAGACGTGGAACGTAACGA
TGGTGAATATCAGTCGCAACAGCAGCAACAAGCGCAGCAGCAAGACTACG
AGAACGGGGGGCCGCCGCCCCGGCGCGGCGGCGATGGTCATGGAGAATAC
AACCAACCCAACAAGATCTTTGTGGGAGGCGTGGCCTGGCATACGACAGA
AGAAGGGCTGTCAAGCTATTTCGGCAAATATGGGGAGCTGACGGACGTGG
TGCTGATGCGGGACAAGAACACGGGCGGGCCTCGAGGCTTCGGCTTCGTG
TCCTTCGCTACGCCTGCAGCGATGGAGGCGGCCGTTTCCGAAGCCCACAT
GCTCGACGGCCGAAACCTCGACGTGAAGAAGGCGGTGCCGCGTGAACAGG
CACCTGCTCCAGTCCGAGCCATATGGGGGGGCACGGGTGCGGGGCCGCAG
CGACAGTTCCAAGACATCAAGAAAGTCTTTGTCGGGGGGTTGTCACCAGA
CGTGACCGAGGAAGCTTTCCGCGCCTATTTCGACAAATTCGGAGAGATAA
CGGACGCGGTCGTGATGATGGACAGGACCACGGGCCGCAGTCGCGGCTTC
GGCTTCGTCACTTACGCCGAGGAGGCGGCCATGAAGAAGGTGTTGAGTCA
GCAGCACGACATGGAGGGAAGGCCTATGGACGTGAAGAGGGCCGAGCCCA
AGGTCCCCGATGCAGGGGCTGGAGGAGGCTATTATAGCGGAGGGGGGGGG
GGAAGAGGGGGAGGGGGATCGTGGGGGGGGGCGCGGAGGAGGGGGGGGGG
GATACGGGGTACTATCACGGGGACGGCTACGGCGGGGGGGGGGGCTACAG
CGCCTACAGTAGCAGAGAGGGGGGGGCTACGGAGGGGTAGGATACGCGTC
GTCGTATCTGGGGGGGGGGGATACGGGCGAGGCGGGGGGC

Coding sequence (CDS) from alignment at KK037250.1:300808..301897-

>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=CDS|length=913bp|location=Sequence derived from alignment at KK037250.1:300808..301897- (Nannochloropsis gaditana)
ATGGCAGACGTGGAACGTAACGATGGTGAATATCAGTCGCAACAGCAGCA
ACAAGCGCAGCAGCAAGACTACGAGAACGGGGGGCCGCCGCCCCGGCGCG
GCGGCGATGGTCATGGAGAATACAACCAACCCAACAAGATCTTTGTGGGA
GGCGTGGCCTGGCATACGACAGAAGAAGGGCTGTCAAGCTATTTCGGCAA
ATATGGGGAGCTGACGGACGTGGTGCTGATGCGGGACAAGAACACGGGCG
GGCCTCGAGGCTTCGGCTTCGTGTCCTTCGCTACGCCTGCAGCGATGGAG
GCGGCCGTTTCCGAAGCCCACATGCTCGACGGCCGAAACCTCGACGTGAA
GAAGGCGGTGCCGCGTGAACAGGCACCTGCTCCAGTCCGAGCCATATGGG
GGGGCACGGGTGCGGGGCCGCAGCGACAGTTCCAAGACATCAAGAAAGTC
TTTGTCGGGGGGTTGTCACCAGACGTGACCGAGGAAGCTTTCCGCGCCTA
TTTCGACAAATTCGGAGAGATAACGGACGCGGTCGTGATGATGGACAGGA
CCACGGGCCGCAGTCGCGGCTTCGGCTTCGTCACTTACGCCGAGGAGGCG
GCCATGAAGAAGGTGTTGAGTCAGCAGCACGACATGGAGGGAAGGCCTAT
GGACGTGAAGAGGGCCGAGCCCAAGGTCCCCGATGCAGGGGCTGGAGGAG
GCTATTATAGCGGAGGGGGGGGGGGAAGAGGGGGAGGGGGATCGTGGGGG
GGGGCGCGGAGGAGGGGGGGGGGGATACGGGGTACTATCACGGGGACGGC
TACGGCGGGGGGGGGGGCTACAGCGCCTACAGTAGCAGAGAGGGGGGGGC
TACGGAGGGGTAGGATACGCGTCGTCGTATCTGGGGGGGGGGGATACGGG
CGAGGCGGGGGGC

Synonyms

Publications