EWM21822.1, cds8819 (CDS) Nannochloropsis gaditana

Overview
NameEWM21822.1
Unique Namecds8819
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:300808..301720 -

Link to JBrowse

Properties
Property NameValue
Start range300808
Start range.
Protein idEWM21822.1
Productrna-binding musashi 2-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100051g1.8861.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:300808..301720 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|585102164|gb|EWM21822.1| (rna-binding musashi 2-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0 
Query:    1 MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWGGARRRGGGIRGTITGTATAGGGATAPTVAERGGLRRGRIRVVVSGGGGYGRGGG 304
            MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWGGARRRGGGIRGTITGTATAGGGATAPTVAERGGLRRGRIRVVVSGGGGYGRGGG
Sbjct:    1 MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWGGARRRGGGIRGTITGTATAGGGATAPTVAERGGLRRGRIRVVVSGGGGYGRGGG 304
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|553177155|ref|XP_005852438.1| (RNA-binding protein Musashi, partial [Nannochloropsis gaditana CCMP526] >gi|422296095|gb|EKU23394.1| RNA-binding protein Musashi, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 491.115 bits (1263), Expect = 1.773e-174
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 
Query:    1 MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGG 240
            MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGG
Sbjct:    1 MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGG 240
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|570968041|gb|ETP31160.1| (hypothetical protein F442_19958 [Phytophthora parasitica P10297])

HSP 1 Score: 215.698 bits (548), Expect = 4.534e-63
Identity = 104/195 (53.33%), Postives = 142/195 (72.82%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQ-APAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+ AP       GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 291
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|567976398|gb|ETL26922.1| (hypothetical protein L916_19483 [Phytophthora parasitica])

HSP 1 Score: 215.312 bits (547), Expect = 4.631e-63
Identity = 104/195 (53.33%), Postives = 142/195 (72.82%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQ-APAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+ AP       GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 291
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|675210667|ref|XP_008914218.1| (hypothetical protein PPTG_17994 [Phytophthora parasitica INRA-310] >gi|566010267|gb|ETI33178.1| hypothetical protein F443_20129 [Phytophthora parasitica P1569] >gi|567947718|gb|ETK73492.1| hypothetical protein L915_19592 [Phytophthora parasitica] >gi|568005891|gb|ETL80169.1| hypothetical protein L917_19323 [Phytophthora parasitica] >gi|568035789|gb|ETM33417.1| hypothetical protein L914_19358 [Phytophthora parasitica] >gi|568085643|gb|ETN00547.1| hypothetical protein PPTG_17994 [Phytophthora parasitica INRA-310] >gi|570313966|gb|ETO61914.1| hypothetical protein F444_20143 [Phytophthora parasitica P1976] >gi|570937752|gb|ETP03009.1| hypothetical protein F441_20009 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 215.312 bits (547), Expect = 4.631e-63
Identity = 104/195 (53.33%), Postives = 142/195 (72.82%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQ-APAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+ AP       GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 291
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|570968042|gb|ETP31161.1| (hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 214.157 bits (544), Expect = 1.343e-62
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+         GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 290
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|567976399|gb|ETL26923.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 214.157 bits (544), Expect = 1.754e-62
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+         GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 290
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|675210669|ref|XP_008914219.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566010268|gb|ETI33179.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567947719|gb|ETK73493.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568005892|gb|ETL80170.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568035790|gb|ETM33418.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568085644|gb|ETN00548.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570313967|gb|ETO61915.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570937753|gb|ETP03010.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 214.157 bits (544), Expect = 1.754e-62
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 0 
Query:   32 RRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
              G D +G   QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA   A++  + E H LDGR ++VK+A+PRE+         GG G      F + KK+FVGGL+P VTE+ FR YF++FG+ITDAVVM+DR T RSRGFGF+T+ EE+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:   97 HHGYDKNGSSAQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRTVEVKRAIPRERTAPGSSDFRGGRGGYSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHEIHGKTVEIKRAEPK 290
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|953492198|emb|CEG45448.1| (heterogeneous nuclear ribonucleoprotein 1-like isoform x1 [Plasmopara halstedii])

HSP 1 Score: 209.149 bits (531), Expect = 5.887e-62
Identity = 107/222 (48.20%), Postives = 150/222 (67.57%), Query Frame = 0 
Query:   12 QSQQQQQAQQQDYE-NGGPPPRRGGDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAP-------VRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPK 225
            Q  QQQ  Q   Y+ NGG              QP K+F+GGV+W TTE+ L  +FGKYG LTD  LM+DK TG PRGFGFV+FA  +A++  + E H LDGR+++VK+A+PRE+  AP        R+ +   G G    F + KK+FVGGL+P + E+ FR YF++FG ITDAVVM+DR T RSRGFGF+T+ +E+++ +V+S+ H++ G+ +++KRAEPK
Sbjct:  105 QHPQQQMEQHHGYDKNGGS------------TQPGKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERT-APGSSEFRGARSGYSSNGGGGGGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPK 313

HSP 2 Score: 83.5741 bits (205), Expect = 1.065e-14
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:  149 KVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWGGARRRGGGIRGTITGTATAGGGATAPTVAER 281
            K+F+GG+S + TE+  R +F K+G +TDA +M D+ TG+ RGFGFVT+A+ +A+ +VL + H ++GR ++VKRA P+   A        G    RG    +      GGGI    T +     G  APT+AE+
Sbjct:  128 KLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTA-------PGSSEFRGARSGYSSNGGGGGGI---FTESKKIFVGGLAPTIAEQ 250
[Close]
BLAST of EWM21822.1 vs. NCBI_GenBank
Match: gi|1173949603|gb|OQR97622.1| (DAZ-associated protein 1-like [Achlya hypogyna])

HSP 1 Score: 211.075 bits (536), Expect = 7.593e-62
Identity = 105/197 (53.30%), Postives = 141/197 (71.57%), Query Frame = 0 
Query:   46 KIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQF-----QDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYS 237
            KIFVGGV+W TTE+ L S+FGKYG LTD  LM+DK +G PRGFGFV+F  P+ ++  + + HMLDGRN++VK+AVPR+   A  +   GG  +G   +F      + KK+FVGGL P VT + FR YF+ +G+ITDA+VMMDR T RSRGFGFVT+ EE A+ +V+S+ H++ G+ +++KRAEPK    G  GGY S
Sbjct:   77 KIFVGGVSWETTEDNLRSHFGKYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVIDRVLGDTHMLDGRNVEVKRAVPRDSQGARPQ---GGASSGYSDRFAGSGRTESKKIFVGGLPPSVTNDDFRTYFEDYGKITDAIVMMDRDTQRSRGFGFVTFEEEGAVAEVISKSHELHGKVVEIKRAEPKGEMRGGRGGYDS 270
The following BLAST results are available for this feature:
BLAST of EWM21822.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102164|gb|EWM21822.1|0.000e+0100.00rna-binding musashi 2-like protein, partial [Nanno... [more]
gi|553177155|ref|XP_005852438.1|1.773e-174100.00RNA-binding protein Musashi, partial [Nannochlorop... [more]
gi|570968041|gb|ETP31160.1|4.534e-6353.33hypothetical protein F442_19958 [Phytophthora para... [more]
gi|567976398|gb|ETL26922.1|4.631e-6353.33hypothetical protein L916_19483 [Phytophthora para... [more]
gi|675210667|ref|XP_008914218.1|4.631e-6353.33hypothetical protein PPTG_17994 [Phytophthora para... [more]
gi|570968042|gb|ETP31161.1|1.343e-6252.58hypothetical protein, variant [Phytophthora parasi... [more]
gi|567976399|gb|ETL26923.1|1.754e-6252.58hypothetical protein, variant [Phytophthora parasi... [more]
gi|675210669|ref|XP_008914219.1|1.754e-6252.58hypothetical protein, variant [Phytophthora parasi... [more]
gi|953492198|emb|CEG45448.1|5.887e-6248.20heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
gi|1173949603|gb|OQR97622.1|7.593e-6253.30DAZ-associated protein 1-like [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8849rna8849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications