rna8849, rna8849 (mRNA) Nannochloropsis gaditana

Overview
Namerna8849
Unique Namerna8849
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length664
Alignment locationKK037250.1:300808..301897 -

Link to JBrowse

Properties
Property NameValue
Productrna-binding musashi 2-like protein
Orig transcript idgnl|cribi|Naga_100051g1.8861.mrna
Orig protein idgnl|cribi|Naga_100051g1.8861
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:300808..301897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g1gene8579Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21822.1cds8819Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8849rna8849-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=mRNA|length=664bp
TACGGAGACTACTACAGCTCGGCCGGGTACTCCCAGCACCCGCACTACGG
CTCGTACCCCTCGCAGCACGGGAGCGCTTACAGCGACTACCCGCCCTCAG
GCGTGGCGGGGGGGCTACTCCTCCTCCTACGCGCATGGGGGGTACGCCCA
GAGCGGCAGCGTCCCTGCGGCGGTGGGAGTGCCTCCGCCCTCCATGGGCG
GGGGGGGGTCTGGAGGCTACAATGGGAGCCACGCCTCGCACTCTCAGGCC
CACGGCGTGCCTTCATCGGACTATGCAGCGGGTGGGGGGGGCGGATACGC
GCCACACCGAGGCCAGCATGCGCACCAGGGGCGAGTAGAGCGGAGTCACC
GCCCCTACTAGGGATGGGAGGGGGCGGGGAAGGGATCAGCCGATAAGGCG
GAGGGTGGGGGAGCGGGGAGGAAATGTTGGAAAATGAAAGGGAAGCGGGA
AGATGGACAAGGCAGGGTTGAGGGGAGTTGGGGTGTGCGAGGATCCTGGT
ATGCCTGTCAGTGTGTGTGAGTGAGAGAGTGTCGATTCTCAGCTGGAATG
GGGGAATCGTAAAGACGAAGAGGAGCTTGCCTTGCACGCAGCAACCGCAG
TAACGAAAGTGTTAGCGGCTCCTTCTATGAATTGAGGAGGAAAGAAGAGA
ATACACTATTAAAA
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protein sequence of rna8849

>rna8849-protein ID=rna8849-protein|Name=rna8849|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MADVERNDGEYQSQQQQQAQQQDYENGGPPPRRGGDGHGEYNQPNKIFVG
GVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAME
AAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKV
FVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEA
AMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGGGGRGGGGSWG
GARRRGGGIRGTITGTATAGGGATAPTVAERGGLRRGRIRVVVSGGGGYG
RGGG
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mRNA from alignment at KK037250.1:300808..301897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp|location=Sequence derived from alignment at KK037250.1:300808..301897- (Nannochloropsis gaditana)
GCTGCCTTGGTTTTGAGGGTCCCGGTGGGGACTGGACAGCTCAAGAAAGA
AAAAAGACGCGTTACCCCTGGTGCTGATGCATGTATCCCCTCCCCACCTC
CACCCAGGCAACACAGATCTTCCCAGAGCCAGACACACCGAGTCAGGGAG
CTCATCAGCACCACATAACGAGGCAGTATGGCAGACGTGGAACGTAACGA
TGGTGAATATCAGTCGCAACAGCAGCAACAAGCGCAGCAGCAAGACTACG
AGAACGGGGGGCCGCCGCCCCGGCGCGGCGGCGATGGTCATGGAGAATAC
AACCAACCCAACAAGATCTTTGTGGGAGGCGTGGCCTGGCATACGACAGA
AGAAGGGCTGTCAAGCTATTTCGGCAAATATGGGGAGCTGACGGACGTGG
TGCTGATGCGGGACAAGAACACGGGCGGGCCTCGAGGCTTCGGCTTCGTG
TCCTTCGCTACGCCTGCAGCGATGGAGGCGGCCGTTTCCGAAGCCCACAT
GCTCGACGGCCGAAACCTCGACGTGAAGAAGGCGGTGCCGCGTGAACAGG
CACCTGCTCCAGTCCGAGCCATATGGGGGGGCACGGGTGCGGGGCCGCAG
CGACAGTTCCAAGACATCAAGAAAGTCTTTGTCGGGGGGTTGTCACCAGA
CGTGACCGAGGAAGCTTTCCGCGCCTATTTCGACAAATTCGGAGAGATAA
CGGACGCGGTCGTGATGATGGACAGGACCACGGGCCGCAGTCGCGGCTTC
GGCTTCGTCACTTACGCCGAGGAGGCGGCCATGAAGAAGGTGTTGAGTCA
GCAGCACGACATGGAGGGAAGGCCTATGGACGTGAAGAGGGCCGAGCCCA
AGGTCCCCGATGCAGGGGCTGGAGGAGGCTATTATAGCGGAGGGGGGGGG
GGAAGAGGGGGAGGGGGATCGTGGGGGGGGGCGCGGAGGAGGGGGGGGGG
GATACGGGGTACTATCACGGGGACGGCTACGGCGGGGGGGGGGGCTACAG
CGCCTACAGTAGCAGAGAGGGGGGGGCTACGGAGGGGTAGGATACGCGTC
GTCGTATCTGGGGGGGGGGGATACGGGCGAGGCGGGGGGC
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Coding sequence (CDS) from alignment at KK037250.1:300808..301897-

>rna8849 ID=rna8849|Name=rna8849|organism=Nannochloropsis gaditana|type=CDS|length=913bp|location=Sequence derived from alignment at KK037250.1:300808..301897- (Nannochloropsis gaditana)
ATGGCAGACGTGGAACGTAACGATGGTGAATATCAGTCGCAACAGCAGCA
ACAAGCGCAGCAGCAAGACTACGAGAACGGGGGGCCGCCGCCCCGGCGCG
GCGGCGATGGTCATGGAGAATACAACCAACCCAACAAGATCTTTGTGGGA
GGCGTGGCCTGGCATACGACAGAAGAAGGGCTGTCAAGCTATTTCGGCAA
ATATGGGGAGCTGACGGACGTGGTGCTGATGCGGGACAAGAACACGGGCG
GGCCTCGAGGCTTCGGCTTCGTGTCCTTCGCTACGCCTGCAGCGATGGAG
GCGGCCGTTTCCGAAGCCCACATGCTCGACGGCCGAAACCTCGACGTGAA
GAAGGCGGTGCCGCGTGAACAGGCACCTGCTCCAGTCCGAGCCATATGGG
GGGGCACGGGTGCGGGGCCGCAGCGACAGTTCCAAGACATCAAGAAAGTC
TTTGTCGGGGGGTTGTCACCAGACGTGACCGAGGAAGCTTTCCGCGCCTA
TTTCGACAAATTCGGAGAGATAACGGACGCGGTCGTGATGATGGACAGGA
CCACGGGCCGCAGTCGCGGCTTCGGCTTCGTCACTTACGCCGAGGAGGCG
GCCATGAAGAAGGTGTTGAGTCAGCAGCACGACATGGAGGGAAGGCCTAT
GGACGTGAAGAGGGCCGAGCCCAAGGTCCCCGATGCAGGGGCTGGAGGAG
GCTATTATAGCGGAGGGGGGGGGGGAAGAGGGGGAGGGGGATCGTGGGGG
GGGGCGCGGAGGAGGGGGGGGGGGATACGGGGTACTATCACGGGGACGGC
TACGGCGGGGGGGGGGGCTACAGCGCCTACAGTAGCAGAGAGGGGGGGGC
TACGGAGGGGTAGGATACGCGTCGTCGTATCTGGGGGGGGGGGATACGGG
CGAGGCGGGGGGC
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Synonyms
Publications