rna8848, rna8848 (mRNA) Nannochloropsis gaditana

Overview
Namerna8848
Unique Namerna8848
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1924
Alignment locationKK037250.1:300044..300707 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g19.548.mrna
Orig protein idgnl|cribi|Naga_100169g19.548
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:300044..300707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g19gene8578Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21857.1cds8818Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8848rna8848-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8848 ID=rna8848|Name=rna8848|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp
CTTCAGGAAGAAGTCTGCGAGGAGCGTAACTTTGGATTAGGCGTTGCACT
GTCCTATGAGATTGTCGACCCGGACTACAACTTTGAGATTTGTTTGTTCT
AACGCACGGAGACGTGTTGAAGTGAGAAATGCTGGGTCAATCGTCCTCAT
AAAATAAAATTGTAAAACCGTCTCAGGTCCCGATTCTCACAATTTTTTTT
TGGGGGGGGACAGCTAGGTATGTACACGTTGCGACAGTATGCTGTACGTT
GTCATAGGCGACAGCCCGTTGCCGCAGGGCCTTTTGTGGAGTTCGCATCT
CGGAAGCATCACGTCTGCTTCTCTACGAACCCCCTTTATGGGACTGCGTC
AAATATCATCAGTCGAGTAGGAATTGTGGGTGCTGGGCCCTCAGGTTTCT
ATGTGGCCAAGTATTTGCTGAAAGAGTTGGGGCCTGGCGCAACGGTAGAT
GTCATGGACTCTCTCCCCACACCCTTTGGCTTGGTGCGTACAGGGGTCGC
GCCCGACCATCCTGAGGTAAAAGCCGTCCAGAGTGACTTCGAAAAAGTGG
CAGGAGACCCTCGTTTTTCTTTTTATGGAAATGTTCGAGTAGGCTACGAC
GTGGATGTAGCGACATTGCGCAGTTTGTACGATGTGTTGGTCTTGGCGTA
CGGGGCATCGGAGGATCGAACGCTTGGAATTCCGGGAGAGGATACCCTGG
AAGGAGTGGTCAGTGCTCGCACGTTCGTTAACTGGTATAACGGCCATCCA
GACTATGCGCAAGATGCCAAGCTAACAGGCATGCTCGGGGAGATCCTGGC
GCAGGCCTCCGCCCAAGTCGCCGTATTGGGTCAAGGCAATGTGGCCTTGG
ATTGCGCCCGCGTGCTGGCGAAGCGACCGGCAGACCTGGAGACAAGCGAC
ATTTGCGAGCATGCCCTGGAGGTGTTGCGGGAAAGCAAGCTGGCTGCCGT
GTCAGTGGTGGGACGGCGGGGGCACGGACAGGCGGCCTTCACCATCAAGG
AGCTCCGGGAACTCTCTCGGATCCCGGGCGCCAGGCTGGTGGTGCCTCCA
GAGGAGGTGGCGATGGGCTTGACAGAATTTACAATCGCAGAGCTCGCGCA
GTCTAGACCCCGGAAGCGGCTGACAGATTTGGTGGCCTCCTTACCCGGCC
CCGCGGTGGGAGGGCAGGCTGGAGAGGGACGGGAACGGGTGGTGGCGCTC
AGATTCCTGCTCCTGCCTCGGGCGTTCCTGCCAGACCCACGGCGGCCGCG
TCGGCTGGGCGCCGTTGTCTTTGAACGTGCCCGCCTGGAGCTGGACGGAC
AGGGAAAGCGCGTGGTGGCCGTGGGGACAGGCGAGACAGAGGAGCTGCCC
TGTCAACTGGCCCTTCGCTCCATCGGCTACAAGTCTCAGCCTGTGGAGGG
TCTTCCCTTCGACAACAAGAAGGCAGTGGTGCCAAACAGACATGGCCGCG
TGCTGGAAGCCGCCAGTGAAGAAGCGGTGCCCGTCCCAGGCGTCTATTGC
ACGGGCTGGGTGAAACGAGGCCCCTCGGGGATTATCAACACGAACATATA
CGACGCCCGAGAGACCGTGGCCGCCATCATGGAGGACGCTACGCAAGGAA
AGTTGCCCTTCTCTTCCTCCTCCTCCTTGCTCGAGGCGCTCGCCCAAGCG
GGGCGCAAGAAGCCGGAGGATGTGGTGTCCTGGGAGGGCTACGGGAAGAT
CGATGCCTGGGAGCGTCGCCATGGGGCCGCGCGAGGGAAGCCTAGAGAGA
AGGTCACGGATAGCCGCCGGCTTCTGGAGATCGCCCGAAGTTGAGCTGTG
GTGGCGGGCTGCAGGTTGTAATGACTTTCATTTCTTAATCGCTCACTCAT
GTGGCAAATAGTGCATACCTGGAAAAGCTACAACAATGTAAATGTAGAGA
TTTAAAGAGTTTTAATAGTGTATT
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protein sequence of rna8848

>rna8848-protein ID=rna8848-protein|Name=rna8848|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
YGDYYSSAGYSQHPHYGSYPSQHGSAYSDYPPSGVAGGLLLLLRAWGVRP
ERQRPCGGGSASALHGRGGVWRLQWEPRLALSGPRRAFIGLCSGWGGRIR
ATPRPACAPGASRAESPPLLGMGGGGEGISR
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mRNA from alignment at KK037250.1:300044..300707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8848 ID=rna8848|Name=rna8848|organism=Nannochloropsis gaditana|type=mRNA|length=664bp|location=Sequence derived from alignment at KK037250.1:300044..300707- (Nannochloropsis gaditana)
TACGGAGACTACTACAGCTCGGCCGGGTACTCCCAGCACCCGCACTACGG
CTCGTACCCCTCGCAGCACGGGAGCGCTTACAGCGACTACCCGCCCTCAG
GCGTGGCGGGGGGGCTACTCCTCCTCCTACGCGCATGGGGGGTACGCCCA
GAGCGGCAGCGTCCCTGCGGCGGTGGGAGTGCCTCCGCCCTCCATGGGCG
GGGGGGGGTCTGGAGGCTACAATGGGAGCCACGCCTCGCACTCTCAGGCC
CACGGCGTGCCTTCATCGGACTATGCAGCGGGTGGGGGGGGCGGATACGC
GCCACACCGAGGCCAGCATGCGCACCAGGGGCGAGTAGAGCGGAGTCACC
GCCCCTACTAGGGATGGGAGGGGGCGGGGAAGGGATCAGCCGATAAGGCG
GAGGGTGGGGGAGCGGGGAGGAAATGTTGGAAAATGAAAGGGAAGCGGGA
AGATGGACAAGGCAGGGTTGAGGGGAGTTGGGGTGTGCGAGGATCCTGGT
ATGCCTGTCAGTGTGTGTGAGTGAGAGAGTGTCGATTCTCAGCTGGAATG
GGGGAATCGTAAAGACGAAGAGGAGCTTGCCTTGCACGCAGCAACCGCAG
TAACGAAAGTGTTAGCGGCTCCTTCTATGAATTGAGGAGGAAAGAAGAGA
ATACACTATTAAAA
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Coding sequence (CDS) from alignment at KK037250.1:300044..300707-

>rna8848 ID=rna8848|Name=rna8848|organism=Nannochloropsis gaditana|type=CDS|length=396bp|location=Sequence derived from alignment at KK037250.1:300044..300707- (Nannochloropsis gaditana)
TACGGAGACTACTACAGCTCGGCCGGGTACTCCCAGCACCCGCACTACGG
CTCGTACCCCTCGCAGCACGGGAGCGCTTACAGCGACTACCCGCCCTCAG
GCGTGGCGGGGGGGCTACTCCTCCTCCTACGCGCATGGGGGGTACGCCCA
GAGCGGCAGCGTCCCTGCGGCGGTGGGAGTGCCTCCGCCCTCCATGGGCG
GGGGGGGGTCTGGAGGCTACAATGGGAGCCACGCCTCGCACTCTCAGGCC
CACGGCGTGCCTTCATCGGACTATGCAGCGGGTGGGGGGGGCGGATACGC
GCCACACCGAGGCCAGCATGCGCACCAGGGGCGAGTAGAGCGGAGTCACC
GCCCCTACTAGGGATGGGAGGGGGCGGGGAAGGGATCAGCCGATAA
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Synonyms
Publications