EWM21856.1, cds8809 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21856.1
Unique Name	cds8809
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:278737..280173 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21856.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100169g9.547.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:278737..280173 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21856.1 vs. NCBI_GenBank
Match: gi|585102199|gb|EWM21856.1| (hypothetical protein Naga_100169g9 [Nannochloropsis gaditana])

HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0

Query:    1 MWRQILWMMIGVSTVANNGVCSAFGLQTTFLVPAPASRASSTPQHATRSPTEEEARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDREKDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPEDIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEALEEEETQRRERDDEESSGWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFIAGGGVQGRRREGQYKKRTRESAGGSESVAGRENVGHEYRVGFGRRSQREERDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKYLLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEKGGRGAGSRGGRTGRGWEEEEEEVKEEDWLSEDEDEDYAYDRARQTWRRTGRGASRGGGARIRRRLSSLFTILGGDAARGMEMVRGGQ 478
            MWRQILWMMIGVSTVANNGVCSAFGLQTTFLVPAPASRASSTPQHATRSPTEEEARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDREKDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPEDIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEALEEEETQRRERDDEESSGWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFIAGGGVQGRRREGQYKKRTRESAGGSESVAGRENVGHEYRVGFGRRSQREERDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKYLLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEKGGRGAGSRGGRTGRGWEEEEEEVKEEDWLSEDEDEDYAYDRARQTWRRTGRGASRGGGARIRRRLSSLFTILGGDAARGMEMVRGGQ
Sbjct:    1 MWRQILWMMIGVSTVANNGVCSAFGLQTTFLVPAPASRASSTPQHATRSPTEEEARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDREKDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPEDIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEALEEEETQRRERDDEESSGWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFIAGGGVQGRRREGQYKKRTRESAGGSESVAGRENVGHEYRVGFGRRSQREERDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKYLLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEKGGRGAGSRGGRTGRGWEEEEEEVKEEDWLSEDEDEDYAYDRARQTWRRTGRGASRGGGARIRRRLSSLFTILGGDAARGMEMVRGGQ 478

The following BLAST results are available for this feature:

BLAST of EWM21856.1 vs. NCBI_GenBank

BLAST of EWM21856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102199\|gb\|EWM21856.1\|	0.000e+0	100.00	hypothetical protein Naga_100169g9 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8839	rna8839	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications