rna8839, rna8839 (mRNA) Nannochloropsis gaditana

Overview
Namerna8839
Unique Namerna8839
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2175
Alignment locationKK037250.1:278521..280192 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g9.547.mrna
Orig protein idgnl|cribi|Naga_100169g9.547
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:278521..280192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g9gene8569Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21856.1cds8809Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8839rna8839-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8839 ID=rna8839|Name=rna8839|organism=Nannochloropsis gaditana|type=mRNA|length=2175bp
TGCCCCGTTAGGAACGGCCAAGCCCTCGTCGAAAGTGTTGTCTCGCTCGT
TTCGTCCTTCTTGTCGCTTCGCGGATCATCCTGCCTGACAATTTGATCTA
CCCGCCCAGTCGTGAAACATCTCTCTGAAAATGTCCTCTCACCAGCAGCA
GTTAGAGCAGCAGCGAGCGGCGGAGGCTTACTATAGGAACATGACTCCGG
AGCAATATCAGGCTTATTATAACCAGTATTATGCTCAACAGCAGCAACAC
CAACAGTACCAGCAAGGAGGCTACGGCTATCCGCAAACGGCGACTACCAG
CGGTAATCGGAAATCCCGTGGTGGCGTTGCCTCGGCCGCGGCAGCCGCGG
ATGCGTACCAGAAGTACTACCAAGACTACTATCAGCAATACGGCGTGTAT
CCCGGCGGGGCGTACGGGCAAGGTCAGGCCGCCGTGGCTGGCGCCTCTGG
CGAGACATACGGGGCCTCTGCGGGTGGATATCCGCATGGCGCCAGCTCAC
ATTCCGGTGCAGCATCCTCTTCATACCATGAAGGATACACGGGCGGGGCG
GGGCAGGCCTCGGTGGGGGGTTTGGACGCAGAAGGAGTGAAAAAACTGGT
CGCCAAAAACGAACGCCTCATGGTCAAGATACTGGAGTGCGAAAAAGCGT
TGGAAAAAACGGGTCCCATCCCTCGTCAAGACCTCTTGGATCGAGTGAAC
AAATTTAAAGGTCGACTGCAGGCGCATCTGACCAAGATGGCGACCTGGAT
GGACAAGAGCAAGTACGAACGCAGCAGACGGTTCCAGCCACAGAAAGCGA
CCTACCGCACGGTGGTGTTGGAGAACAAGATCCTTAAGGAACCGCGCGCG
GCTGCCAACTCCTCCTTGGTCGCCGCCTCGGCGCCTGGACAGGGGGCCCA
TCAGCGACAGGGGAGCGGGGGGCGGGCGGCCTCTGCCTCCTCCTTCTACC
AAGCGGCCACCACCGCCATGCAGCCTTCGGCCGCCGCCGCGACAGCGTCG
ACCGCAGCGGCCGCCACGACCCGCTCTCGGTATTCGGGCGTGTATTATGA
TGAGCGGGGGAGCGTCTGGAGCGCCTGGCTGACCCTGGCGGGGGGCCACA
ACAAGTGCCTTGGGTACTTTCGGCAGGAGATGGACGCGGTGGAGGCTCAG
CAGCAGGCAATCAGCGAGTATCGGACCACGGGGCAGATCACGGGGCCTTT
TAAAGGGCAGTTGGGAGCGTTGCCAGAGGGGGTGCAGCCGAGCAGCGTGC
AGGAGCAACACATCAAGTCGGTCGCGGAGACCGCCAAGAAGCTCAAGGCG
GAGAAGGCACGCAAGAGACGGAAGTCGGCTGCGGGGGGCGGAGAGGGAGA
GGGAGAGGAGAGCGAGTACGAGGGCTCGGGGGGGGAGGCGGCAGGCGGGT
CGGACTCGGAAAGGGAGGAGGGGCATGGGAGCGGGGGGTTGGGGATGGCG
GGGGGTGCATCCGGCGGCAACAAAAGGAAATCGGTCAAGCAAGGCCAGGG
GGTCGCGGCCTCGGCAGCAGCGTACGAGCAGTACCAGCGACAGGTGGCGC
AGCAGCAAGGGGCGGGCGCGACGGAGGCCCCGGGCCAGCAACAGTGGACG
CCCGAGGCCATCGCCAAGTACTACGAGGACATGGCCAAGGCCTATCCGGA
GCACGCCGTCTACTACCAGCAGCAAGCCGCCGCGCACGTCCTCCAGCAGC
AACAAATGGCAGCGGCTGCCGCTGCTGCGGCGGGCCGGGACACGGGGCCC
GGGACGGGCCAGCCGGCGGCCCTCTCCTCGCTCTACACGCAGCAACAACA
GCAGCTCCTTCGTCAGCAGCAACAGTCATATCCAGGCGCGATGGGGGGAC
TCGGGGGCGCAGCCTCGGCGGAGTTGAAGGAGGGAGAGCGGATCAAGGTG
CGGGTGACGGTGAACGGGGCGGCGCTGAACCCGGAGCCCCATCCGCTCTA
TATCCGGAAGGGCGTAGTGGCCACGGCCATGTAAGCAGAAGCGAAGGGGG
CGTTGGGGCAAGGATCAAGGAGGGAGGTGGCGGGAGAGTTGGCGGGTTGC
CTCGCACCGGGCGAGGGAGGACGGTCTGTGGGCGTGAAAGACGAACGAGG
CGGCACCAGATGAGCGTGCCAGCTCAATCGACATGACAAGCTATAAACGA
AAGAAAAGAGTTTTGCCTCGATCGA
back to top

protein sequence of rna8839

>rna8839-protein ID=rna8839-protein|Name=rna8839|organism=Nannochloropsis gaditana|type=polypeptide|length=478bp
MWRQILWMMIGVSTVANNGVCSAFGLQTTFLVPAPASRASSTPQHATRSP
TEEEARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDRE
KDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPE
DIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEALE
EEETQRRERDDEESSGWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFI
AGGGVQGRRREGQYKKRTRESAGGSESVAGRENVGHEYRVGFGRRSQREE
RDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKY
LLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEKGGRGAGSRG
GRTGRGWEEEEEEVKEEDWLSEDEDEDYAYDRARQTWRRTGRGASRGGGA
RIRRRLSSLFTILGGDAARGMEMVRGGQ
back to top

mRNA from alignment at KK037250.1:278521..280192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8839 ID=rna8839|Name=rna8839|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp|location=Sequence derived from alignment at KK037250.1:278521..280192- (Nannochloropsis gaditana)
CTTTACAGGATAGTGCGTCATGTGGCGACAGATACTCTGGATGATGATAG
GAGTATCGACGGTAGCCAACAACGGAGTATGCTCGGCTTTCGGACTACAG
ACCACCTTCCTCGTCCCGGCTCCGGCTTCTCGCGCGTCCTCAACCCCCCA
GCATGCCACCCGCTCTCCCACCGAAGAGGAGGCAAGATCGGACCCTTTGG
AGTGTTGGAACTTGAATGTGGTGCCCGATAAGAAATTGTTGGCGGCAGCT
CGGGCGGAGGCTTTGAAGAAAGACGCTGACTGGTATCAGGCAGTGATCGG
CGGGAATGAAGATCGTGAGAAGGATCATTCATTGAGGACCGTTAGACCGG
CTACTGACGAGATCGTTGTGGAAGAATCGACTGGCAATGATACGCTTGAG
GTTCCACAGGCTCTGAAGCCGTTGGTAGATCTGGGGTATTCCCAAGAAGA
AGCGACGGAGCTGCCGGAGGACATCGCGAGCATTATCGTAGAGAGCGGCA
TTCGGCGGCCCGAGGGTAAATTGCCCAAGGAATGGCTGACTTCGGACACG
GATATTGAGCCACACAAAGACGCTGCCGATAGAGAGGAGCACGACACGTG
GGCGGAAGAGGCATTGGAAGAAGAGGAAACTCAGAGGCGGGAGAGGGATG
ACGAAGAAAGCTCAGGCTGGGCGGGAGCCCCTGGAAAGCGTCCGGGCAAA
GCAACGAAGGAAGTGCGGTCTGTGAGGAGCGCTGAGTCGAGGAACGTGCC
CACAAGTGCATCCTTCATTGCGGGCGGGGGCGTTCAGGGACGGCGGAGGG
AGGGGCAATACAAGAAGAGGACACGGGAGAGCGCAGGGGGTTCGGAGTCA
GTGGCCGGGAGGGAGAATGTGGGTCATGAGTATCGCGTGGGATTTGGGAG
AAGGAGCCAGCGGGAGGAGCGCGATGACGACAGGGAGTTTGAGGACTTCG
ACCCCACCTTCGCCGAGCAAGAACCAGGCCTGCTGCCCCTCTTGCTGGAC
CTTGTGGCGGAGCGGGTGCGGGGGAGCCGCCTGCTCCGGCCCCTTTTGAG
GGAGTCCAAGTTCAAGTACCTGCTCAGCCAGGAGGCGGACCTGAGGCTGA
TGGTCACGGGGCCCTGGGCCGCAGAGCTTCTACAGGACGAGATCCGGTGG
CGCCTGGGGCTCTTCCGGGATTATCTTAAGGTGGAGGAGAAGGGGGGGCG
GGGGGCGGGGAGCCGAGGGGGGAGGACGGGAAGGGGATGGGAGGAAGAGG
AGGAGGAGGTAAAAGAGGAGGACTGGCTTTCGGAGGATGAGGATGAGGAC
TATGCATATGATCGCGCTCGCCAAACCTGGAGACGCACAGGCAGGGGAGC
ATCGAGGGGGGGGGGCGCGCGGATCCGGCGACGACTCTCTTCCCTCTTTA
CGATACTCGGAGGAGACGCGGCCAGGGGGATGGAGATGGTCAGGGGAGGA
CAATGAGGACGGGGTGTTGGAGGCGAATTGGCGCGCGCTGGATGCGGAGG
AAGAGAGGGAGGAGAAGGCGGAGGGCGTAAACCGTTACACCGGCTCCTCC
GTGTCCCCTCCCCCTTTCCCCCCCTCCTCCTCCCCGTCACTAAATCGGCA
ACGCCGGCGGCAACGGCGGTCGGAGGTTCGTGCGGGCGTGGGGGTGGATC
GCAGATTTATGGGCCAGCAGGA
back to top

Coding sequence (CDS) from alignment at KK037250.1:278521..280192-

>rna8839 ID=rna8839|Name=rna8839|organism=Nannochloropsis gaditana|type=CDS|length=1437bp|location=Sequence derived from alignment at KK037250.1:278521..280192- (Nannochloropsis gaditana)
ATGTGGCGACAGATACTCTGGATGATGATAGGAGTATCGACGGTAGCCAA
CAACGGAGTATGCTCGGCTTTCGGACTACAGACCACCTTCCTCGTCCCGG
CTCCGGCTTCTCGCGCGTCCTCAACCCCCCAGCATGCCACCCGCTCTCCC
ACCGAAGAGGAGGCAAGATCGGACCCTTTGGAGTGTTGGAACTTGAATGT
GGTGCCCGATAAGAAATTGTTGGCGGCAGCTCGGGCGGAGGCTTTGAAGA
AAGACGCTGACTGGTATCAGGCAGTGATCGGCGGGAATGAAGATCGTGAG
AAGGATCATTCATTGAGGACCGTTAGACCGGCTACTGACGAGATCGTTGT
GGAAGAATCGACTGGCAATGATACGCTTGAGGTTCCACAGGCTCTGAAGC
CGTTGGTAGATCTGGGGTATTCCCAAGAAGAAGCGACGGAGCTGCCGGAG
GACATCGCGAGCATTATCGTAGAGAGCGGCATTCGGCGGCCCGAGGGTAA
ATTGCCCAAGGAATGGCTGACTTCGGACACGGATATTGAGCCACACAAAG
ACGCTGCCGATAGAGAGGAGCACGACACGTGGGCGGAAGAGGCATTGGAA
GAAGAGGAAACTCAGAGGCGGGAGAGGGATGACGAAGAAAGCTCAGGCTG
GGCGGGAGCCCCTGGAAAGCGTCCGGGCAAAGCAACGAAGGAAGTGCGGT
CTGTGAGGAGCGCTGAGTCGAGGAACGTGCCCACAAGTGCATCCTTCATT
GCGGGCGGGGGCGTTCAGGGACGGCGGAGGGAGGGGCAATACAAGAAGAG
GACACGGGAGAGCGCAGGGGGTTCGGAGTCAGTGGCCGGGAGGGAGAATG
TGGGTCATGAGTATCGCGTGGGATTTGGGAGAAGGAGCCAGCGGGAGGAG
CGCGATGACGACAGGGAGTTTGAGGACTTCGACCCCACCTTCGCCGAGCA
AGAACCAGGCCTGCTGCCCCTCTTGCTGGACCTTGTGGCGGAGCGGGTGC
GGGGGAGCCGCCTGCTCCGGCCCCTTTTGAGGGAGTCCAAGTTCAAGTAC
CTGCTCAGCCAGGAGGCGGACCTGAGGCTGATGGTCACGGGGCCCTGGGC
CGCAGAGCTTCTACAGGACGAGATCCGGTGGCGCCTGGGGCTCTTCCGGG
ATTATCTTAAGGTGGAGGAGAAGGGGGGGCGGGGGGCGGGGAGCCGAGGG
GGGAGGACGGGAAGGGGATGGGAGGAAGAGGAGGAGGAGGTAAAAGAGGA
GGACTGGCTTTCGGAGGATGAGGATGAGGACTATGCATATGATCGCGCTC
GCCAAACCTGGAGACGCACAGGCAGGGGAGCATCGAGGGGGGGGGGCGCG
CGGATCCGGCGACGACTCTCTTCCCTCTTTACGATACTCGGAGGAGACGC
GGCCAGGGGGATGGAGATGGTCAGGGGAGGACAATGA
back to top
Synonyms
Publications