rna8829, rna8829 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8829
Unique Name	rna8829
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1496
Alignment location	KK037250.1:262503..266289 +

Link to JBrowse

Properties


Property Name	Value
Product	regulator of nonsense
Orig transcript id	gnl\|cribi\|Naga_100159g2.6557.mrna
Orig protein id	gnl\|cribi\|Naga_100159g2.6557
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:262503..266289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g2	gene8559	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8829	rna8829-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21879.1	cds8799	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:262503..266289+
coding sequence from alignment at KK037250.1:262503..266289+

mRNA sequence

>rna8829 ID=rna8829|Name=rna8829|organism=Nannochloropsis gaditana|type=mRNA|length=1496bp
TTCGCGATGCCGCCTAACCTCGTTTCGTGTTCTCTCCCGCAAATTTCGAG
TTGCCATCCAATTTGCGCATGTCGCTCATCACGGCTGGGACAGCCGTTTT
TAAGAGGGGATGATGATGCCCACTAAGCTTTCATACTGCCTCATCCTGCA
CATGCTAGGTGGGGGCTTTCCTTTTGCATGCCGTACTCGCACTTCCGCCT
GTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGCTTGCGCTGATT
TTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTTCTGTACCAGCG
ACTTCCGGCAGTGGCGGTGTGCCCTCAGAGAGCATGACCGACAAGGACAA
CAAGGGAGGCGGCGGTGCCTTTGACCCGAAGGACCTGGCCTTCAAAATGC
CAACCCAGTCCAAGGACGAAATCTTCTCGGACAAGCCACCTAAAAGTTGG
CCTGAGCTCGTCGGAATGGACGGAGAAGATGCGAAGAAGCAAATCACTGC
TGACATGCCGGGCCTCAACGTGATTGTTCTACCCAAGAACTCCCCCACAA
CCCGAGACTACCGGCTAAACCGTGTTCGGGTCTTTGTTCACGAAGACAAC
AAGGTGGCGGTCGTTCCACATCAAGGTTGATGGATGTATTCAACCGCCGT
CACCATCTCATTCTTGCCTCCTTCCACAAAAGTGAATAGTCCTTGCACCA
TGGATTACAGGCTGGAGCGAGTTCGCGTCTTCGTGGACGAAGAAGGCAAG
GTTGTAGTTGCTCCCTCGCAAGGCTAACTCTTGAAGGGACATGGAAAACA
ATCATCGGCTCGAGATTGAGACTCTGTTTATCCACCAAAAAAAAAAAATT
ATGTCGACCATTGACTTTGGAGATTTGAGGGAAAGAAATTCTCAATGAAG
TGCTTTAATGGAGAAGGGAAGGACTTTGCGGAACGAAAGGGGCATAGATA
GACATTGATTGCGAAGTATTTGCGTGCTGCGAATGTGTAACTAGACATCA
AAGATGGTTGGATGTCGTTGAGATAAGAGAATTCCGGGACAGTAAGGCGC
CATGAACAAATTTGTAATTTGTGGGTATTTTATTTTTATCGGCTATGTTT
TTGGTATTGTGCGCCATCGGTTAAAAGAAGATGGCTTCAAGTAAGTTTGC
AATTTGCGTGAAGGGCGTTGTTCGGGAGATTAAACCATGCAATCTTCACC
GAATCTGTCGCGTTGCACGTGATACAGATTTTATAAGGGGATCTATGATC
GCAACATCTCCAAACATAGCAAACGAAAGTGACGAATTGCGGGTCGTCTT
CATGGCTTAAGAGCCTCTTCACCTCCAAGAACACAGTCATCAGCTGCTCC
AGTCCTCGCCTGTAATCGTAACCCTGAAATTGACAAATATATCCCAGACC
AAAGTGTTTATTTTTCTTTGTGTTGGGATGATTGTGTTTCACATATTATA
CACGCTATCATTCGCATCAAAACAAAATATGACCGGTACCTCCGAA

protein sequence of rna8829

>rna8829-protein ID=rna8829-protein|Name=rna8829|organism=Nannochloropsis gaditana|type=polypeptide|length=996bp
MRAAHVSLACLSLLLSIFALTATGFSTYPGQLAGFQTLPQSRRHSRLFRQ
QRGLPITALRAGENSGTSSEAGEAGRGFGASVRRSSKKEGGRSSGLRPRA
PNAFSSIGKSVRLRGKFGGGPMDMGLLDGYSKLMEQAEAVQRHYSGRRPV
QDGGGRQRGAKKAATFHALSSYSLHFLRLLEEELVYEEAEVMQRLRYWPR
SRLMEEGLGVFGVVARPRGRLFKEYILRFTLPARRGGGGRRPGNAPAGAL
GKKGASMDTPPQTSRKKGDAEPPGPFPRAPPLAYHRLGPGDIISITPDKQ
NPLGSDQVIEGLVLERGAAHVDVVVKEIPPGVVWRRGDPTGGERFRLDLY
LNRISFQRMVAAVHQVTGLETGYTVSPEIRDILVKSFAERFDVVASHHNE
RGGAGLGSGSAGQNHHSLLAMSPYAAAAAANKKAARQQQSLSKKMREDED
AGRGKAGARSSRGHRDNGGRGKAKAGAATKSSWEALASAVPKTSFARKAA
DQIVSQEVARFKLNESQERALRMALSRKLSLIQGPPGTGKTRTACHLVSI
AVKLGQRRDAGKVLAVAFSNVAADNLLEGCLRLGLNAVRVGRAATVRPEL
RNHTLDALLMQHQSVTTFKKKLEAVRGSTARDVQAAKRDLEDAELMAAVS
ILGNADVVVSTCVGAANEVIINAASVTGGLGGRGGGGGGWEEPSSFSSAS
PLRAVKFPTVIIDEASQATEPATLVPLTQGCEQLVLVGDHYQLPPTIKSM
RAARHGLGVSLFTRLAMAGIEPSLLTVQYRMHPFIAQFPSQRFYGGLLKS
HPGNARKRPRPDGFPWPHPTLPVAFVAVGGDEEDTHMAPFYEQRTNGNQT
SYMNRKEADVLMEVLGGVLRRRNIQSMDVGIVTPYSAQVKHVTELAQARL
RHFNPGDLEIQSVDAYQGREKELIVMSAVRSNKHGKVGFLGDWRRLNVAI
TRAKRGLVVLGDPRTLRHDPHWSAYLKWAYKHGCVMTVGELRERLD

mRNA from alignment at KK037250.1:262503..266289+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8829 ID=rna8829|Name=rna8829|organism=Nannochloropsis gaditana|type=mRNA|length=3787bp|location=Sequence derived from alignment at KK037250.1:262503..266289+ (Nannochloropsis gaditana)
TcatcaggagggaggaactcTCCCGTCCCACGCGCGAAACGAATCTCATT
TTATTCCATGGTCCAACCCCACACTTTTCCATTTGTAGAAACACACGCCT
CTTCACTCCATTTAACCCGCCTCTCGGCGCCTTAAGAGCCAGGTGCAGAG
GGTGAGGCTCGAGGGCTTACTATTTCATCTTCCAACATTGATTTTGCAAC
CTCCGCCGGTTCGTCCTGCGGAAGTTTAGCTCCCACACACAGCCATGCGC
GCCGCCCATGTATCCCTCGcttgcctctcccttctACTTTCCATTTTCGC
CCTGACCGCAACTGGATTTTCGACATACCCCGGACAACTTGCCGGCTTTC
AGACTCTGCCTCAATCGAGGCGCCATTCTCGCCTCTTTCGCCAACAAAGA
GGCCTCCCTATAACGGCACTGCGGGCAGGTGAGAATTCCGGCACTTCGTC
CGAGGCCGGAGAAGCTGGTCGCGGTTTCGGTGCAAGCGTGAGAAGATCGA
GTAAaaaggaaggcggaaggagcAGCGGATTGCGTCCTCGCGCGCCGAAT
GCTTTCTCCTCAATAGGAAAGTCAGTGCGCCTTCGAGGGAAATTCGGCGG
CGGTCCGATGGACATGGGCTTGTTGGATGGTTATTCGAAACTCATGGAGC
AAGCCGAAGCGGTCCAACGCCACTACAGCGGGCGCCGCCCCGTGCAAGAC
GGCGGCGGGCGACAACGAGGTGCGAAAAAAGCCGCGACTTTCCACGCCCT
GAGCTCCTAcagcctccacttcctccgccttctgGAGGAAGAGTTGGTCT
acgaggaagcagaggtCATGCAGCGCTTGCGGTACTGGCCCCGATCGCGG
CtcatggaggagggtctTGGGGTCTTCGGCGTGGTGGCTCGACCCCGAGG
CCGGCTCTTCAAGGAGTACATACTGCGCTTTACTCTgcccgcgaggaggg
gcgggggggggcgccgcCCTGGCAATGCCCCCGCCGGCGCCctggggaaa
aaaggcgctTCCATGGATACTCCGCCGCAAACCTCtcggaagaaagggga
cgcGGAGCCGCCGGGGCCCTTCCCCAGGGCGCCTCCCCTCGCGTACCACC
GGCTGGGCCCGGGCGACATCATCAGCATCACGCCGGACAAGCAGAACCCG
CTCGGGTCCGACCAAGTGATTGAAGGCCTGGTGCTGGAGCGGGGAGCGGC
CCacgtggacgtggtggtcAAGGAGATTCCTCCGGGGGTGGTTTGGCGCC
GCGGAGACCCCACAGGCGGGGAGAGGTTCCGGCTCGACCTCTACCTGAAC
CGCATCTCTTTCCAGCGcatggtggcggccgtgcATCAAGTCACGGGCCT
GGAGACTGGGTACACGGTGTCTCCAGAAATTCGAGACATCCTGGTCAAAA
GCTTCGCCGAGCGCTTTGACGTGGTCGCGTCCCACCACAACgagcggggc
ggggccggtCTGGGGTCCGGCTCTGCGGGTCAGAACCATCACTCCCTTCT
CGCCATGTCACCTTATGCGGCCGCAGCTGCCGCAAACAAGAAGGCGGcgc
ggcagcagcagagcTTGTcgaaaaaaatgcgcgaagacgaggacgctggg
cgggggaaagctggtgcgaggagcagcaggggcCACCGCGACAACGGGGG
CCGTGGGAAGGCCAAGGCAGGGGCCGCCACCAAGTCATCCTGGGAGGCCC
TAGCCAGTGCCGTGCCCAAGACCTCGTTCGCCCGCAAAGCCGCCGATCAG
ATCGTCTCTCAGGAGGTGGCCCGCTTTAAGCTGAATGAGAGCCAGGAGCG
GGCCTTGCGGATGGCCTTGAGTCGGAagctctccctcatccaaGGGCCGC
CAGGCACGGGCAAGACCCGCACAGCCTGCCACCTGGTCAGCATTGCCGTC
AAGCTCGGCCAGCGCAGGGACGCAGGCAAGGTACTGGCCGTGGCTTTTAG
TAATGTGGCGGCGGACAACCTCTTGGAAGGCTGCCTGCGCCTCGGACTGA
ACGCTGTGCGGGTGGGACGGGCGGCGACCGTGCGCCCGGAGCTTCGGAAC
CACACCTTAGACGCGTTGCTGATGCAGCACCAGAGCGTGACTACTTTCAA
GAAAAAGCTGGAGGCAGTGCGGGGCTCGACTGCCAGAGACGTGCAGGCTG
CAAAGAGGGACTtggaggacgccgagctGATGGCCGCCGTCTCCATCTTG
GGGAACGCCGACGTGGTGGTGTCCACCTGCGTGGGCGCAGCGAATGAGGT
CATCATCAACGCTGCCAGCGTGACGGGGGGCCTGGGCGgtaggggaggcg
gggggggaggctgggaggaaccgtcgtccttctcctccgccagcccttTG
CGCGCCGTCAAGTTCCCGACCGTCATCATCGACGAGGCCTCCCAGGCCAC
GGAACCCGCCACGCTCGTGCCCCTGACGCAAGGCTGCGAGCAGCTCGTCC
TTGTCGGGGACCATTACCAGCTCCCGCCCACCATCAAGAGCATGCGCGCC
GCTCGTCACGGCCTGggcgtctccctcttcacccgACTGGCCATGGCTGG
CATCGAGCCCTCCTTGCTAACGGTTCAGTATCGGATGCACCCCTTCATCG
CCCAGTTTCCGTCCCAACGCTTTTACGGCGGGCTCTTGAAGTCACATCCG
GGCAACGCGCGCAAACGCCCGCGACCCGACGGCTTTCCGTGGCCCCACCC
GACACTGCCGGTTGCCTTCGTAGCGGTtggcggcgacgaggaggacactC
ATATGGCCCCTTTCTACGAGCAGCGGACGAACGGGAACCAGACCTCGTAC
ATGAATAGAAAGGAGGCTGATGTGTTGATGGAGGTCTTGGGGGGCGTGCT
CCGGCGGCGCAATATCCAGAGCATGGACGTAGGCATCGTCACTCCCTACT
CGGCCCAAGTCAAGCATGTTACCGAGCTGGCGCAGGCACGCCTGCGTCAC
TTTAACCCGGGCGACCTGGAGATCCAAAGTGTGGACGCCTAtcaggggcg
ggagaaagaacTGATTGTCATGTCCGCTGTCCGCAGCAACAAGCATGGAA
AGGTCGGGTTTCTCGGCGACTGGAGGCGCTTGAACGTGGCCATTACCCGA
GCGAAACGCGGACTCGTGGTCCTGGGGGACCCCCGCACTTTGCGGCACGA
CCCACATTGGAGCGCGTACTTGAAATGGGCGTACAAGCATGGCTGCGTCA
TGACTGTGGGAGAGCTGAGGGAGCGGCTGGACTAGGATGGAGGATgtcag
gaggagagaaataCGATAATCAGCGGCTTTAATATGCTTATACGAAAGCC
CGGAGCTAGATGTCAAAGTGGTGTACAGCAAAGTTGATATGTAGTAGTTT
CCTCAAACCCACGCTTTTGGAAAAGTTTTGTTGAGAATGAGAACAATCAG
GCATGACAGTGGAAATATCTGATACCATGACCCGTGGTTCGTTTTGCTGG
AATGTAAATGCTCGCCGCGGAAAAAGGTGCGAGGGGAAGTCgagctgagg
aggaagatggttTCGCGGCGCACGATGAGTGGCTTCCAGGTCTTACAGAG
TTAACATTTCATTTGAAAAAGTGTACATATGTATCGCACAAATTCTGACG
CAAGTATTTTTTTACTGACTTGGGGTTAGTGTAGAGTTCGGGGGAACCGT
TTTTCAGCTGTTATACATAAGTGCCCCAAGTCTCAATTTGTCGAAGCAAG
TCCGTGTATCTCTATTAGCCACTAGATAAGAGAGGCATTGAAGGGAAGTA
CGgacggaagaagaaaaaaaccCATTTCAGCGGTAAC

Coding sequence (CDS) from alignment at KK037250.1:262503..266289+

>rna8829 ID=rna8829|Name=rna8829|organism=Nannochloropsis gaditana|type=CDS|length=2991bp|location=Sequence derived from alignment at KK037250.1:262503..266289+ (Nannochloropsis gaditana)
ATGCGCGCCGCCCATGTATCCCTCGcttgcctctcccttctACTTTCCAT
TTTCGCCCTGACCGCAACTGGATTTTCGACATACCCCGGACAACTTGCCG
GCTTTCAGACTCTGCCTCAATCGAGGCGCCATTCTCGCCTCTTTCGCCAA
CAAAGAGGCCTCCCTATAACGGCACTGCGGGCAGGTGAGAATTCCGGCAC
TTCGTCCGAGGCCGGAGAAGCTGGTCGCGGTTTCGGTGCAAGCGTGAGAA
GATCGAGTAAaaaggaaggcggaaggagcAGCGGATTGCGTCCTCGCGCG
CCGAATGCTTTCTCCTCAATAGGAAAGTCAGTGCGCCTTCGAGGGAAATT
CGGCGGCGGTCCGATGGACATGGGCTTGTTGGATGGTTATTCGAAACTCA
TGGAGCAAGCCGAAGCGGTCCAACGCCACTACAGCGGGCGCCGCCCCGTG
CAAGACGGCGGCGGGCGACAACGAGGTGCGAAAAAAGCCGCGACTTTCCA
CGCCCTGAGCTCCTAcagcctccacttcctccgccttctgGAGGAAGAGT
TGGTCTacgaggaagcagaggtCATGCAGCGCTTGCGGTACTGGCCCCGA
TCGCGGCtcatggaggagggtctTGGGGTCTTCGGCGTGGTGGCTCGACC
CCGAGGCCGGCTCTTCAAGGAGTACATACTGCGCTTTACTCTgcccgcga
ggaggggcgggggggggcgccgcCCTGGCAATGCCCCCGCCGGCGCCctg
gggaaaaaaggcgctTCCATGGATACTCCGCCGCAAACCTCtcggaagaa
aggggacgcGGAGCCGCCGGGGCCCTTCCCCAGGGCGCCTCCCCTCGCGT
ACCACCGGCTGGGCCCGGGCGACATCATCAGCATCACGCCGGACAAGCAG
AACCCGCTCGGGTCCGACCAAGTGATTGAAGGCCTGGTGCTGGAGCGGGG
AGCGGCCCacgtggacgtggtggtcAAGGAGATTCCTCCGGGGGTGGTTT
GGCGCCGCGGAGACCCCACAGGCGGGGAGAGGTTCCGGCTCGACCTCTAC
CTGAACCGCATCTCTTTCCAGCGcatggtggcggccgtgcATCAAGTCAC
GGGCCTGGAGACTGGGTACACGGTGTCTCCAGAAATTCGAGACATCCTGG
TCAAAAGCTTCGCCGAGCGCTTTGACGTGGTCGCGTCCCACCACAACgag
cggggcggggccggtCTGGGGTCCGGCTCTGCGGGTCAGAACCATCACTC
CCTTCTCGCCATGTCACCTTATGCGGCCGCAGCTGCCGCAAACAAGAAGG
CGGcgcggcagcagcagagcTTGTcgaaaaaaatgcgcgaagacgaggac
gctgggcgggggaaagctggtgcgaggagcagcaggggcCACCGCGACAA
CGGGGGCCGTGGGAAGGCCAAGGCAGGGGCCGCCACCAAGTCATCCTGGG
AGGCCCTAGCCAGTGCCGTGCCCAAGACCTCGTTCGCCCGCAAAGCCGCC
GATCAGATCGTCTCTCAGGAGGTGGCCCGCTTTAAGCTGAATGAGAGCCA
GGAGCGGGCCTTGCGGATGGCCTTGAGTCGGAagctctccctcatccaaG
GGCCGCCAGGCACGGGCAAGACCCGCACAGCCTGCCACCTGGTCAGCATT
GCCGTCAAGCTCGGCCAGCGCAGGGACGCAGGCAAGGTACTGGCCGTGGC
TTTTAGTAATGTGGCGGCGGACAACCTCTTGGAAGGCTGCCTGCGCCTCG
GACTGAACGCTGTGCGGGTGGGACGGGCGGCGACCGTGCGCCCGGAGCTT
CGGAACCACACCTTAGACGCGTTGCTGATGCAGCACCAGAGCGTGACTAC
TTTCAAGAAAAAGCTGGAGGCAGTGCGGGGCTCGACTGCCAGAGACGTGC
AGGCTGCAAAGAGGGACTtggaggacgccgagctGATGGCCGCCGTCTCC
ATCTTGGGGAACGCCGACGTGGTGGTGTCCACCTGCGTGGGCGCAGCGAA
TGAGGTCATCATCAACGCTGCCAGCGTGACGGGGGGCCTGGGCGgtaggg
gaggcggggggggaggctgggaggaaccgtcgtccttctcctccgccagc
ccttTGCGCGCCGTCAAGTTCCCGACCGTCATCATCGACGAGGCCTCCCA
GGCCACGGAACCCGCCACGCTCGTGCCCCTGACGCAAGGCTGCGAGCAGC
TCGTCCTTGTCGGGGACCATTACCAGCTCCCGCCCACCATCAAGAGCATG
CGCGCCGCTCGTCACGGCCTGggcgtctccctcttcacccgACTGGCCAT
GGCTGGCATCGAGCCCTCCTTGCTAACGGTTCAGTATCGGATGCACCCCT
TCATCGCCCAGTTTCCGTCCCAACGCTTTTACGGCGGGCTCTTGAAGTCA
CATCCGGGCAACGCGCGCAAACGCCCGCGACCCGACGGCTTTCCGTGGCC
CCACCCGACACTGCCGGTTGCCTTCGTAGCGGTtggcggcgacgaggagg
acactCATATGGCCCCTTTCTACGAGCAGCGGACGAACGGGAACCAGACC
TCGTACATGAATAGAAAGGAGGCTGATGTGTTGATGGAGGTCTTGGGGGG
CGTGCTCCGGCGGCGCAATATCCAGAGCATGGACGTAGGCATCGTCACTC
CCTACTCGGCCCAAGTCAAGCATGTTACCGAGCTGGCGCAGGCACGCCTG
CGTCACTTTAACCCGGGCGACCTGGAGATCCAAAGTGTGGACGCCTAtca
ggggcgggagaaagaacTGATTGTCATGTCCGCTGTCCGCAGCAACAAGC
ATGGAAAGGTCGGGTTTCTCGGCGACTGGAGGCGCTTGAACGTGGCCATT
ACCCGAGCGAAACGCGGACTCGTGGTCCTGGGGGACCCCCGCACTTTGCG
GCACGACCCACATTGGAGCGCGTACTTGAAATGGGCGTACAAGCATGGCT
GCGTCATGACTGTGGGAGAGCTGAGGGAGCGGCTGGACTAG

Synonyms

Publications