rna8818, rna8818 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8818
Unique Name	rna8818
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4436
Alignment location	KK037250.1:241505..243480 +

Link to JBrowse

Properties


Property Name	Value
Product	u3 small nucleolar rna-associated protein 18
Orig transcript id	gnl\|cribi\|Naga_100159g14.6558.mrna
Orig protein id	gnl\|cribi\|Naga_100159g14.6558
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:241505..243480 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g14	gene8549	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8818	rna8818-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21880.1	cds8788	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:241505..243480+
coding sequence from alignment at KK037250.1:241505..243480+

mRNA sequence

>rna8818 ID=rna8818|Name=rna8818|organism=Nannochloropsis gaditana|type=mRNA|length=4436bp
TCGGAGCATCGGGATAGCCGACGCGAAGGTGCAAAAGACGGGGAACCGGC
GTCAAAGGCACAAACCGGGTACTGAACGCCGTCACTCCTACGTGTACAGC
AAGCAGTATGTCGAGTAGCCTTGGAGATGCCCACTACTTCGAGGAGAGTA
TGAACGCAACTAAGGTGCGAGCTTACTTGGCCTCAAACAAGGAAGCAGAA
AAATCACGGGGCATGAAATTTCTTCTTGCCAATATGAGCAAAGGTACGTG
AGGCATCTCGTTTTCCTCGTGGGACAACGCTCGTGAAGAGCCTTGAGATA
AAGCCTCCCCTCATGCTATCTCTCAGTATCCGTATCGAGCCAAGGCCTGC
TTTCCTCCTCCGGACTGATCAAAACATGTTGTCATACCCTTAAAAATCTC
ACGACCGATCTCTTCATTTTTGTGTGGTTCTGACCTCGCTCACCTTCTCC
CTGTTTTCGCGGTGGCGTCCTACATTTGTGTGGGATGGGTAGGTCGCGAT
ATGTCCGAGTTTTTCCCGGACGTGGTGAAGAATGTGGTGGTGCGGGCGGT
GGAGGTGAAAAAGATGGTCTACATGTACCTGGTACACTACGCGGACGCCA
CCGGCACCTGTCGCGAGCTGGCCCTCCTCTCCATAAACTCCTTCCAGAAG
GACCTGGCGGCGGCGAACCAGCTCATCCGGGCCCTGGCCCTGCGGGTCAT
GACCTCCATCCGCGTCCCCGACATCATTCAGATCCAACTCCTCGCCATCT
TCAAGTGCGCCTCCGACTCCTCTCCCTACGTGCGCCGATGCGCGGCCACG
GCTGTCCCCAAGGTCTACGCGCTGGAGCCGGCCCAGCTCCCCGCCCTCGT
CCAGGCCCTGGAGAAGCTCCTCCGAGACTCCTCCACCATGGTCTTGGGCT
CCGCGGTGGCGGCTTTCAACGAGGTGTGCCCAACCAATTACGAGCTTCTG
CATCGCAGCTACCGCAAGCTCTGCCACCTGCTTGCCGACATGGACGAGTG
GACGCAGATCTCGGTGCTCACGGTGCTGACGCGGTACGTCCGCACACAGT
TCTGTGACCCAGCGCCCGAAACGCGTGCCGTCATCCTGGCGCAGGCGCAG
CAACGTGCTTCCTCCTCCGCCTCGGGGGCAGCGGCAGTGACGGCCTTGGA
GGGGTCGGGAAAGAGGATGCAAAGGGCGATCAAACGCCGGGTGGTCAAGA
AGGCTTTCTACTCGGACGAGGAGGACGTGAGCGAGGAGGAGGAGGTCCAG
ATCCCGGACCCCCTGGGCCCGTCCGCAAGCCTGCCCTCCTGGTCCCAGGC
CCCGGGCCCCACCCGGTATCAGAGCGCGGACGCCGAGCTGGACGCGGCGG
AGCTGGACCCTGACCACAAGCTTCTCCTGCGCTCCTGCCTCCCCTTGCTC
AAGAGCCGGAACTGCGGCGTTGTCCTGGCCGTGGCTACCCTCCACTACTA
TTGCGGGACCCAGAGCGAGTTTATCGCGGCGCAGCTGGGCAAGTCCCTGG
TCCGGATCTCGCGGAACCGGCGGGAGATCGCCTTCGTGGTCCTCAAGGCC
ATCGCCTCCATGGCACAAGAGCGACCCTCCATGTTTCGGCCCTTCTTGCG
GGACTTCTTCGTGCAACCGGCCGCGGACCCCTCCTTCTGCCGCACGCTCA
AGCTCGACATCCTGACTGCGCTCACTGACGCTGACAATGTCCCCCTGGTT
CTGAAGGAGCTGCAATCCTACGTGAAGCACGCCGACAAGGACTTCGTTTG
CGCGACGGTGCGGGCCGTGGGGAGAGTGGCAGATGCCGAGCCCGCCGTCG
CCGCTAAGTGCCTGAACGGGCTCATGTCCCTCCTGGCATGCGTGCGCTCC
GAGAAGGTGGCGGGGCAGGTGGTGGTGGTTGTGCGTCAGCTCCTTCAGCA
GAACAAGAAGGGGGCGCACATCGAGGAGGAGGAGCAGGAGAGGGTGGTCA
GGCAGCTGGCCCACGTCCTCCTGAAAGAAAAAGGCCGGCAAGTTCCTCCT
CCCGCTCGAGCCTCCCTGATATGGATTGTCGGTGAATTTATGCGCTTTGT
GGATGCGGCGGCCCCGGACATCCTCCGCCTTCTGGCGCAGTCATTCTCGG
AGGAGGACCCCCCGGTGAAGATGCAAATTGTGAACCTGGCCCTGAAACTG
AGGCTGTATCACGCCCAAATGTTGAGGAAAGCAAGCAGCAGGGCGGGTGG
GAAGGAAATGCGTTTGCTTGAAGGGGAGGAGGAGGAGGAGGACGATGCTG
TGGCCAAGCTGGTTCGGTATGTGCTGGAAGTCGCACGGTTTGATACAAAT
TACGACCTCCGGGATCGTACTCGCTTACTAACGGCGTGCTTGGGATTGGC
CGCAGGCGGGGGAGGGGCGGGAGGCGCGGACACGGCGGCCCTCGTGGCGC
TGCGTGCGAAGGCCGACGAAGTGTTCCTGCAGACCAAGCTGCCTCCTCTC
ACTTCCCGGGGTCCCGTGGCAACGGAGGGGATGCCTCATCTGAACATTTC
TTCCTTGTCCTGGATGCTGAACCACAAAGTGCAGGGCTACGAGGAACTCC
CGGGGTGGGCGGCCTTTCCGCAAGACCCGTCGGTGAGGGACGCGCCCAAA
GGTCTGGGGGAGGCAGCAGAGCAATCCACCGGCAGCTTTGGAGGTGCGAC
GGAGGAGGGTAGAGGGAGAGAAGTGGGCCCCGAAGGCGGAAGCGAAGACT
CCGAATTCTACTCAGACGAGACTGAGGGTTCGGACGTGGACGAAGACGAG
GGAGGCAGCGGAGAGAGCTCTTTTTCGTCCTCCCAGGAGAGTGAGAGTGA
GAGCGCCTCTTCTGTGTTGCCCAGCGAAGACAGCGAGACAGACTCGGTTA
GGAATGAGCCCGCGAGGACGGCAGCAACACAGAGCGGTCTGGTCAGCCGC
CTGGAAGGGGCTGGGGCCCGCTTTCCGGAGGCCTCTTCGTCGTCGGAGGG
AGAGGAAGAAGATAGCAGCAGCGAGGGGAGCAGCAGCGGGTATTCGAGCG
GCTCAGAAAGCGAAGAGGAGGGAAAAAGCCTACAAGATAGTAGCCGCGCT
GGCTACGATGGGGTCACGAGGGACCTGTTGCCAACCGACAGGGACAAAGG
GGCACTCGGGCAAAAGGCGGGGCTGTCAGCCGCCCCTCGGTCTGATGAGG
AGGGACAGGACTCGGAAAGCTCCTTGCTCGACTTGGAGGCGTATGCCGTG
GCCAAGAGGGATTCCCTTCCGGATCTTGTGAATGGGAAGGCTGGAGGCGC
GGATGAGCAGCTTCTTGACCTGATGCGGGGCATGGAGGAGACCTCTCTCT
CTGAGAAGCGCACCAGCTCTCGAATTACCTCTGCAGGGGATCGGGTCATA
TCTGCACCGCATGAGCTTTTACGCCATGATGTAGGCGGTGGATTGGCAGT
CAAGTATTCCTTCACGCGCGCCGACCCAACGCCAGCCACAAGCACCCTTC
TACTCGCCTTGACTAACAAGCAGCAGGGGCCTTTGCGTCGGATCAAGCTG
ACGTCAGTCCATGCCGCCGACTTCAAACGGCTGGCCCCTTTTCCGGAGAT
CCCCGTGCTGGAAGCCGGCGTGACCGTGGAGCAGACTCTGCGGGTGCATC
GGGGCCTGAATGGTGTCGAGAATCTGAAGCTGCAGTTCAGCACGGATCGG
GGGGGGCCCTATGTGGTGACGGTGGTTTTGCCCCCAGAGGAGTCTCTCCT
GCCCCACCCCGTCTCGTCCTCCGAGGCCGAGGCTATTCAGCGATCCCTAT
TGGGAGGCTTCCATGAAAGCAAAGCCTCTTTGTCTTTGCCCATGGCCCTG
TGCGACGATCCTGACAGCGTACCGCGCAAAGTGCTGCAGACCGCAAATCT
AGCCTGGGTCTCCTCGCTCGATCGTTGGCAGGAGGAGCGGGTTGCGCTCT
TCGCCTCTTTGCTGTGGCGGAGGGAGGATGACGAGCGCGACAGGAGGGGG
CGGATGGTGATCCAAATTTCTTTGGACGGAAACGGTGGCCGATTGAAGCT
GCAGGTGAATTGCGACGATGCCGTCATGAGCGCCACGCTCCTGGAGGTGT
TGAAAAAAGGACTGGCTAGATCGGAGGCACCGCGGAGTTTATGAGAGGCG
AAGACGTTGTCAACGTGAAAAGCTTCGTGCTGGTAGTTAATGCTGTTAAA
TAGGTTAAACTGCACGAAACAAAGAACGCACATTATTGGCCGCAGTTTTG
TGACGTGAAGAGATGGAATTGATTGATATTCGTCGGCTATATTCTTGGCA
TCATGTTACACTAAGTACCTCCGCCCAACGTATGTACAACCAAAAGGGGA
CTCCAAAATTTGCGTTCGTCATCACATGTACCCTGGACTATCCTCCCTCC
TTCAGAAGCGCCTGCAGGTCCTGGATGTCCTCCTTGCTGCCGATGAAGAT
CGGCACCCTCTGATGGACGCTCGAAGGCCGCAGATC

protein sequence of rna8818

>rna8818-protein ID=rna8818-protein|Name=rna8818|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MPSGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEM
VGTLDVDNELDQEAGVGPEEANIIAQAGPSKRQRKQNEQQRRRKVDDEAE
KDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGS
GSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRAR
FAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVE
GDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVV
QAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAF
VDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVA
SPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMA
SGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAGMLAVGAESGVVNL
YEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGML
LAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAV
GNDRGRVLLYRLRHYESS

mRNA from alignment at KK037250.1:241505..243480+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8818 ID=rna8818|Name=rna8818|organism=Nannochloropsis gaditana|type=mRNA|length=1976bp|location=Sequence derived from alignment at KK037250.1:241505..243480+ (Nannochloropsis gaditana)
CACTTAAAAACAGGCAGTTTCCGAGACCAGCGTGCCATGCCATCGGGTGC
CCGACGGTCGTCCCGGGGGGGCGCAGGCAAGCCCCCccctggagagggag
agcgggtgCCTGACTCGCAGCCCCCCGATGCTCCTGACAAGGATGCAGCG
CCGCTTTTCTACGTCGATCGAGAGGAAAACGAGATGGTTGGGACCCTAGA
CGTGGATAACGAGCTGGATCAAGAGGCAGGCgtggggccggaggaggctA
ATATAATAGCACAGGCAGGGCCGTCCAAGCGCCAGAGGAAGCAAAACGAA
CAGcaaaggcggagaaaggtAGACGACGAAGCAGAGAAGGATGACGAAGA
ACGCACCTTGGAGCGTCTCGTATTTGGGGCCCGAGACACGGAAGCGCTTC
TCCAAGGTGAAGATGGTCTCACGCCACAGGACAcagtgtgggagggaggt
ttaGGAAACAATCATGAAGACGAGGTCGAAGGGAGTGGATCGACACGGAC
GCCCGCCTGGAaagatgaggacgatgagaCGCTTTGGGTGGATGTGGCGA
GAAAGGACAGGCTGCGTAAATTGCGCCGGCACCCGGACGAGAGGGACATT
AGCGGAGCCGATTACCAAGAGCGATTGCGTGCAAGGTTTGCGAAAGGTCA
TGAGGCAGCCTTGGACTGGGCAAGATTGCCGACAACTCCTGGAGACAGGG
GGGATGGGCGGCGAGGTAGGCGTCGACGTGGACGAGAGTGGGGAGGCGCA
GAGActagcgaggaggaggaagaggaagtggtggagggggatgatGACTT
TGGAGGTCTTTTTCGGAGCAGTGCGCCTTTGGTGGTAGGTTCTGGCACAA
GCACTCGCCGGCGGCTTCAACCAGGAACCCTGGAGGTAGCTCGGTGTCGA
GATGCGAACTTGCAGGAGCCGTCGCAGGCCGTGGTGCAGGCCGTGCAgtt
ccatccctccacaGGCGGACTCCTCTTCACGGCGGGCCTGGACAAGACCC
TGCGCTTCTTTCAAGTGGACGGAAAGCGGAACGACAAGGTGGCGGGCGTC
TTTTTCCAGGACTTGCCCATCCAGGCGGCGGCTTTcgtggacgggggggg
ggacaaatccttccgggaggtggtggtgagcgGGCGCCGACCTTTCTTCT
ACTGGCACGACCTGGAAGCGGGGGCTTCGAGTCGGGTGCCGCGGCtgatg
gggcgggaggagaagagcttGGAGCGTTTCGTGGCCTCACCGGACGGGCA
ATGGCTGGCCTTCACAGGCAAGGACGGTTATGTGGTGCTGGTCGGGGCCC
GGAGCAAGCAGTGGGCGGGGGAGTTCAAGATGAACGGCACGGCCAGGGCG
CTGGCTTTCAGCGCGGACGGGCGGCACCTGatggcctcggggggggacgc
ggTCGTCTACCGCTGGGACCTACGGTCGCGGCGGTGCCTGGCTCGCTTTC
ACAATGAGGGCGGCACGGTTACCTCCGcgctggccgcctccgcggGCATG
CTGGCCGTgggggcggagagcgggGTGGTGAACCtgtacgaggaggaggc
ggtgctcGGGGGGGCTGCAGGGCCGGAGCATGGGCCGACATCCTGGCACT
CCACCGCCGCGCTCGCCCCGTGCAAGGCTTTGACGCACCTGATGACGGCC
GTCGACACGCTCGCCTTCAACCACGACGGCATGCTcctggccatggcctc
caagTGGAACCGCGACGCCCTACGGGTCGTGCATGTGCCTTCGCGGACCG
TCTTCTCGAACTGGCCCACCGGGCAGACCCCCATCCGCTACCCATCCGCC
CTGGCCTTTAGCCCGAACAGCGGCATGCTTGCCGTTGGGAACGACCGCGG
CCGCGTCTTGCTTTACCGCCTGCGGCACTACGAGAGTAGTTGAAAGCCGA
AGGtgtcggcggggggggtaTCTTGAGGTGGGGAAAACGTGCAAAGAAGG
CAAAAGCATCCGCACGTCGCGTGCAA

Coding sequence (CDS) from alignment at KK037250.1:241505..243480+

>rna8818 ID=rna8818|Name=rna8818|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at KK037250.1:241505..243480+ (Nannochloropsis gaditana)
ATGCCATCGGGTGCCCGACGGTCGTCCCGGGGGGGCGCAGGCAAGCCCCC
ccctggagagggagagcgggtgCCTGACTCGCAGCCCCCCGATGCTCCTG
ACAAGGATGCAGCGCCGCTTTTCTACGTCGATCGAGAGGAAAACGAGATG
GTTGGGACCCTAGACGTGGATAACGAGCTGGATCAAGAGGCAGGCgtggg
gccggaggaggctAATATAATAGCACAGGCAGGGCCGTCCAAGCGCCAGA
GGAAGCAAAACGAACAGcaaaggcggagaaaggtAGACGACGAAGCAGAG
AAGGATGACGAAGAACGCACCTTGGAGCGTCTCGTATTTGGGGCCCGAGA
CACGGAAGCGCTTCTCCAAGGTGAAGATGGTCTCACGCCACAGGACAcag
tgtgggagggaggtttaGGAAACAATCATGAAGACGAGGTCGAAGGGAGT
GGATCGACACGGACGCCCGCCTGGAaagatgaggacgatgagaCGCTTTG
GGTGGATGTGGCGAGAAAGGACAGGCTGCGTAAATTGCGCCGGCACCCGG
ACGAGAGGGACATTAGCGGAGCCGATTACCAAGAGCGATTGCGTGCAAGG
TTTGCGAAAGGTCATGAGGCAGCCTTGGACTGGGCAAGATTGCCGACAAC
TCCTGGAGACAGGGGGGATGGGCGGCGAGGTAGGCGTCGACGTGGACGAG
AGTGGGGAGGCGCAGAGActagcgaggaggaggaagaggaagtggtggag
ggggatgatGACTTTGGAGGTCTTTTTCGGAGCAGTGCGCCTTTGGTGGT
AGGTTCTGGCACAAGCACTCGCCGGCGGCTTCAACCAGGAACCCTGGAGG
TAGCTCGGTGTCGAGATGCGAACTTGCAGGAGCCGTCGCAGGCCGTGGTG
CAGGCCGTGCAgttccatccctccacaGGCGGACTCCTCTTCACGGCGGG
CCTGGACAAGACCCTGCGCTTCTTTCAAGTGGACGGAAAGCGGAACGACA
AGGTGGCGGGCGTCTTTTTCCAGGACTTGCCCATCCAGGCGGCGGCTTTc
gtggacggggggggggacaaatccttccgggaggtggtggtgagcgGGCG
CCGACCTTTCTTCTACTGGCACGACCTGGAAGCGGGGGCTTCGAGTCGGG
TGCCGCGGCtgatggggcgggaggagaagagcttGGAGCGTTTCGTGGCC
TCACCGGACGGGCAATGGCTGGCCTTCACAGGCAAGGACGGTTATGTGGT
GCTGGTCGGGGCCCGGAGCAAGCAGTGGGCGGGGGAGTTCAAGATGAACG
GCACGGCCAGGGCGCTGGCTTTCAGCGCGGACGGGCGGCACCTGatggcc
tcggggggggacgcggTCGTCTACCGCTGGGACCTACGGTCGCGGCGGTG
CCTGGCTCGCTTTCACAATGAGGGCGGCACGGTTACCTCCGcgctggccg
cctccgcggGCATGCTGGCCGTgggggcggagagcgggGTGGTGAACCtg
tacgaggaggaggcggtgctcGGGGGGGCTGCAGGGCCGGAGCATGGGCC
GACATCCTGGCACTCCACCGCCGCGCTCGCCCCGTGCAAGGCTTTGACGC
ACCTGATGACGGCCGTCGACACGCTCGCCTTCAACCACGACGGCATGCTc
ctggccatggcctccaagTGGAACCGCGACGCCCTACGGGTCGTGCATGT
GCCTTCGCGGACCGTCTTCTCGAACTGGCCCACCGGGCAGACCCCCATCC
GCTACCCATCCGCCCTGGCCTTTAGCCCGAACAGCGGCATGCTTGCCGTT
GGGAACGACCGCGGCCGCGTCTTGCTTTACCGCCTGCGGCACTACGAGAG
TAGTTGA

Synonyms

Publications