EWM21880.1, cds8788 (CDS) Nannochloropsis gaditana

Overview
NameEWM21880.1
Unique Namecds8788
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:241541..243397 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21880.1
Productu3 small nucleolar rna-associated protein 18
Orig transcript idgnl|cribi|Naga_100159g14.6558.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:241541..243397 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|585102224|gb|EWM21880.1| (u3 small nucleolar rna-associated protein 18 [Nannochloropsis gaditana])

HSP 1 Score: 1249.57 bits (3232), Expect = 0.000e+0
Identity = 618/618 (100.00%), Postives = 618/618 (100.00%), Query Frame = 0
Query:    1 MPSGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEMVGTLDVDNELDQEAGVGPEEANIIAQAGPSKRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYESS 618
            MPSGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEMVGTLDVDNELDQEAGVGPEEANIIAQAGPSKRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYESS
Sbjct:    1 MPSGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEMVGTLDVDNELDQEAGVGPEEANIIAQAGPSKRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYESS 618          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|219120925|ref|XP_002185694.1| (anthranilate synthase. anthranilate synthetase. chorismate lyase, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582543|gb|ACI65164.1| anthranilate synthase. anthranilate synthetase. chorismate lyase, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 383.259 bits (983), Expect = 3.350e-124
Identity = 206/469 (43.92%), Postives = 297/469 (63.33%), Query Frame = 0
Query:  156 PAWKDEDDETLWVDVARKDRLRKLRRHPDE---RDISGADYQERLRARFAKGHEAA--LDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGG---LLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            PAW DEDD  L V++    RLRKLR+   E     + G D +ERLR R+ +  +A    DWARL                       +++S   +++    D+D    F+S +   +   +++ RRL P TL + RC DAN  +P+Q+V+QAV FHP++     LL TAGLDKTLRFFQV   +++KV G+ F  LPI +A+F+   G+     VVVSGRR FFY +D  AG    +P+++GREE+SLE+   SPDG+ +AF G DGY++L  A +KQW  + K++G+ RA+ F+ DG +++ASG D  +YRWDLR+RRC+ RF N+ GT+TS LAAS+  LAVGAESGVVN++ E ++   A G  H   S  +     P K++ +L T+ D + FN DG +LA +S+  +++++++HVPS TVFSNWPT +TP+ +  ++ FSP S  LAVGND+G+ LLYRL HY+
Sbjct:    5 PAWVDEDDVGLEVNLLATSRLRKLRKSKAEVAALALCGTDLEERLRQRYQRTTQATARTDWARL-----------------------SDSSTLIDKDAGNNDEDSDSDFKSLST-SLLLHSTSTRRLPPNTLNLVRCPDANQSDPNQSVLQAVHFHPASDADQPLLLTAGLDKTLRFFQVGVDKSEKVHGIHFPKLPIYSASFLGSSGN-----VVVSGRRSFFYIYDTVAGKLELIPKILGREERSLEKCFPSPDGRTIAFVGNDGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFTNQDGTITSYLAASSRHLAVGAESGVVNMFSEHSMGYRAVG--HVVVSERN-----PMKSILNLHTSADMVRFNGDGQILAFSSRREKNSMKLLHVPSATVFSNWPTSKTPLGFVWSMDFSPESKYLAVGNDKGKCLLYRLMHYQ 437          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|168041425|ref|XP_001773192.1| (predicted protein [Physcomitrella patens] >gi|162675551|gb|EDQ62045.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 382.104 bits (980), Expect = 2.434e-123
Identity = 219/468 (46.79%), Postives = 290/468 (61.97%), Query Frame = 0
Query:  154 RTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFV-DGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS--AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYESS 618
            R PAW+DE D  + VD+    RL+KLR   DE  I  ++Y  RLRA  AK + +   WA LP     R   R+          GAE  EEEEE   E +++  GL    + LVV      + RL  G +EV+R +DAN+ EPS AVVQ+V FH S G LL TAG DK LRFFQ+DGKRN KV G+F +D PI  AAFV DG G      VV +GRR FF+ +DL+AG   RV  ++GREEKSLERF  SPDG+ +AFTG +GY++L   RS+Q  G  KMNG    L+F+ADG+ L++ GGD  VY WDLR+RRC+ +  +EG    +AL  S  + + A G+ +GVVNLY  E+ LGG                  P KA  +L T+VD L F+ D  +LA++S+  +D++R++HVPS+TVFSNWPT +TP++Y  ++AFSP  G  A GN  G+ LL+RLRHY+ +
Sbjct:   38 RKPAWEDEHDAAVVVDLKAASRLKKLRTTADELVIPASEYAARLRAHHAKLNPSTA-WAELP---WQRKKRRQEGGDDFGLGLGAEEDEEEEEYEGEEEENQRGLLLEHSDLVV----KNKGRLPQGLIEVSRVKDANIVEPSDAVVQSVDFH-SNGQLLLTAGFDKKLRFFQIDGKRNPKVQGIFLEDFPIHKAAFVPDGSG------VVAAGRRNFFFVYDLQAGKVERVNCMVGREEKSLERFEVSPDGKIVAFTGNEGYIILASLRSRQCIGTLKMNGDTSHLSFAADGKELLSIGGDGEVYHWDLRTRRCIHKAPDEGCVKNTALQVSPDSKIFATGSSAGVVNLYNRESFLGGVR---------------KPLKAFMNLTTSVDNLRFSPDSQILAISSRMKKDSVRLIHVPSQTVFSNWPTLKTPLQYVHSMAFSPGGGYFATGNGAGKALLFRLRHYDHA 475          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|502077326|ref|XP_004485620.1| (PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Cicer arietinum])

HSP 1 Score: 383.259 bits (983), Expect = 1.113e-122
Identity = 200/465 (43.01%), Postives = 280/465 (60.22%), Query Frame = 0
Query:  154 RTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVE-GDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS--AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHY 615
            R P W DE++E + V++A+ +RLRKLR+  DE  ISG++Y  RLRA+  K +    DWA+L +  G + D          +    E +++E + VV  G +D   + R++  LVV S +    +L PG +E +R  DAN+Q+PS   + +VQFH   G LL   GLDK LRFFQ+DGKRN K+  +F +D PI+ A+F+  G      +V++SGRR FFY  DL      ++  L+GREEKSLE F  SPD Q +AF G +GY++LV  +SKQ  G  KMNGT R+LAF+ DG+ L+++GGD  VY WDLR+R C+ +  +EG   ++AL  S      A G++SGVVN+Y  E  LGG                  P K + +L   VD + FNHD  +LA+ S   + +L+++HVPS TVFSNWP   T + YP  + FSP  G +AVGN  G+VLLY+L HY
Sbjct:  127 RKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYVSRLRAQHVKLNRGT-DWAQLDS--GSKID----------DSSDDELTDDENKAVVSRGYEDVDDILRTNEDLVVKSSS----KLLPGHIEYSRLVDANIQDPSNGPINSVQFH-RNGQLLLATGLDKKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGS-----QVILSGRRKFFYSLDLVKARVDKIGPLLGREEKSLEFFEVSPDSQMIAFVGNEGYILLVSTKSKQLVGTLKMNGTVRSLAFTEDGQKLLSAGGDGHVYHWDLRTRTCMHKGVDEGCINSTALCTSPLGTHFAAGSDSGVVNIYNREEFLGGKR---------------KPIKTIDNLTAKVDFMKFNHDSQILAICSSMKKSSLKLIHVPSYTVFSNWPAPNTSLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHY 553          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|1021533584|ref|XP_016163753.1| (U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1021533586|ref|XP_016163754.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1191765889|ref|XP_020962196.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1191765891|ref|XP_020962197.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1191765894|ref|XP_020962198.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1191765896|ref|XP_020962200.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1191765898|ref|XP_020962201.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis])

HSP 1 Score: 382.874 bits (982), Expect = 1.431e-122
Identity = 211/558 (37.81%), Postives = 312/558 (55.91%), Query Frame = 0
Query:   81 KRQRKQNEQQRRR--------------------KVDDEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAG--MLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            KR+R+Q+E Q+ R                    K D+E E  D++ +   L F  R   ++L          +V+EG    + E + + +   R P W D+++E   +++A  +RLRKLR+  DE  ISG++Y  RLRA+  K +    DWA++        D R    R   +    E+ EE E  + +G+ D   + R++  LVV S +    +L PG +E ++  DAN+Q+PS   + +VQFH     LL   GLD+ LRFFQ+DGKRN K+  +F +D P++ A+F+  G      +V++SGRR FFY  DL      +V  L+GREEKSLE F  SPD + +AF G +GY++LV  ++KQ     KMNGT R+LAF+ DG+ L++ GGD  VY WDLR+  C+ +  +EG   ++AL+ S G  + A G++SG+VN+Y  E  LGG                  P K + +L T VD + FNHD  +LA+ S   + +L+++H+PS TVFSNWP     + YP  L FSP  G +AVGN  G+VLLY+L HY+
Sbjct:   45 KRKREQSEMQQVREMKKLESFLFGSLYSPVEFGKEDNEVETGDKKSS--DLFFTDRSANSVL----------SVYEGDADISEESDDDRAAVQRKPVWVDDEEEKATINIANVNRLRKLRKEEDEDLISGSEYVSRLRAQHVKLNPGT-DWAQI--------DSRSKIDRSSDD----ESDEENEAALNQGNKDVDDILRTNEDLVVKSSS----KLLPGHVEYSKLVDANIQDPSNGPINSVQFH-RNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS-----QVILSGRRKFFYSFDLVKAKVDKVGPLVGREEKSLENFEVSPDSKLVAFVGNEGYILLVSTKTKQLVSTLKMNGTVRSLAFAEDGQQLLSGGGDGQVYHWDLRTMTCMHKGVDEGCINSTALSTSPGGKLFAAGSDSGIVNIYNREEFLGGKR---------------KPIKTIENLTTKVDFMKFNHDSQILAICSCMKKSSLKLIHIPSYTVFSNWPPPNASLSYPRCLDFSPGGGFMAVGNSAGKVLLYKLHHYQ 552          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|703064155|ref|XP_010087134.1| (U3 small nucleolar RNA-associated protein 18-like protein [Morus notabilis] >gi|587835805|gb|EXB26574.1| U3 small nucleolar RNA-associated protein 18-like protein [Morus notabilis])

HSP 1 Score: 382.874 bits (982), Expect = 2.300e-122
Identity = 221/557 (39.68%), Postives = 313/557 (56.19%), Query Frame = 0
Query:   81 KRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQD-------------------TVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS--AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            KR++ Q EQ  +  +    E++ E +TLE ++FG+  +  L   +D    Q+                   +V+E G     E E E     R P W DE++E   +++A+ +RLRKLR+  DE  ISG++Y  RLRA+ AK +    +WARL +  G RGD          E G       ++ E V+       L R++  LVV S    R +L PG LE +   DAN QEPS A + +VQFH     LL TAGLDK L+FFQ+DGKRN K+  +F +D P+  A+F+  G      +V+++GRR FFY  DL      ++  L+GREEKSLE F  SPD   +AF G +GY++LV +++K+  G  KMNGT R+LAF+ DG+ L++SGGD  VY WDLR+R CL +  +EG    ++L  S    + A G+ESG+VN+Y  +  LGG                  P K + +L T V+ + FN+D  +LA+ S   +D+L+++HVPS TVFSNWP     + YP  L FSP  G +AVGN  G+VLLY+L HYE
Sbjct:   44 KRKKAQKEQDEKLVL----EQEREMKTLENVLFGSLHSPILFGKDDEDESQNGFDKDSALCFVDRSANTALSVYEDGKELLEETEDEEEKKLRKPVWVDEEEEKARINIAKVNRLRKLRKEEDESLISGSEYVSRLRAQHAKLNPGT-EWARLDS--GIRGDRYSDDEASDEEIGAVLARGYKDVEAVDN------LLRTNEDLVVKS----RAKLLPGHLEYSALVDANAQEPSNATINSVQFH-RNAQLLLTAGLDKRLKFFQIDGKRNTKIQSIFLEDFPVLKASFLPDGS-----QVIIAGRRKFFYAFDLVKAKVDKIGPLVGREEKSLESFEVSPDSSTIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCLHKGVDEGCINGTSLCTSPDGTLFAAGSESGIVNVYNRDDFLGGKR---------------KPLKTIENLTTRVNFMKFNNDAQVLAVCSHMKKDSLKLIHVPSFTVFSNWPPRNRHLSYPRCLDFSPGGGFMAVGNAAGKVLLYKLHHYE 562          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|1021481863|ref|XP_016184036.1| (U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1021481865|ref|XP_016184037.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1021481867|ref|XP_016184038.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis] >gi|1021481869|ref|XP_016184039.1| U3 small nucleolar RNA-associated protein 18 homolog [Arachis ipaensis])

HSP 1 Score: 380.563 bits (976), Expect = 1.117e-121
Identity = 212/556 (38.13%), Postives = 310/556 (55.76%), Query Frame = 0
Query:   81 KRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGARDTEALLQGEDG-----------LTPQD-------TVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAG--MLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            KR+R+Q+E Q+ R          E + LE  +FG+  +      ED            L   D       +V+E     + E + + +   R P W D+++E   +++A  +RLRKLR+  DE  ISG++Y  RLRA+  K +    DWA++        D R    R   +    E+ EE E  + +G+ D   + R++  LVV S +    +L PG +E ++  DAN+Q+PS   + +VQFH     LL   GLD+ LRFFQ+DGKRN K+  +F +D PI+ AAF+  G      +V++SGRR FFY  DL      +V  L+GREEKSLE F  SPD + +AF G +GY++LV +++KQ     KMNGT R+LAF+ DG+ L++ GGD  VY WDLR+  C+ +  +EG   ++AL+ S G  + A G++SG+VN+Y  E  LGG                  P K + +L T VD + FNHD  +LA+ S   + +L+++H+PS TVFSNWP     + YP  L FSP  G +AVGN  G+VLLY+L HY+
Sbjct:   45 KRKREQSEMQQVR----------EMKKLESFLFGSLYSPVEFGKEDNEVEIGDKKSSDLFFTDRSANNVLSVYEEDADISEESDDDRAAVQRKPVWVDDEEEKATINIANVNRLRKLRKEEDEDLISGSEYVSRLRAQHVKLNPGT-DWAQI--------DSRSKIDRSSDD----ESDEENEAALNQGNKDVDDILRTNEDLVVKSSS----KLLPGHVEYSKLVDANIQDPSNGPINSVQFH-RNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPDGS-----QVILSGRRKFFYSFDLVKAKVDKVGPLVGREEKSLENFEVSPDSKLVAFVGNEGYILLVSSKTKQLVSTLKMNGTVRSLAFAEDGQQLLSGGGDGQVYHWDLRTMTCMHKGVDEGCINSTALSTSPGGKLFAAGSDSGIVNIYNREEFLGGKR---------------KPIKTIENLTTKVDFMKFNHDSQILAICSGMKKSSLKLIHIPSYTVFSNWPPPNASLSYPRCLDFSPGGGFMAVGNSAGKVLLYKLHHYQ 552          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|1117544693|ref|XP_019449113.1| (PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Lupinus angustifolius] >gi|1117544695|ref|XP_019449114.1| PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Lupinus angustifolius] >gi|1102709430|gb|OIW08288.1| hypothetical protein TanjilG_21754 [Lupinus angustifolius])

HSP 1 Score: 379.022 bits (972), Expect = 3.117e-121
Identity = 193/463 (41.68%), Postives = 280/463 (60.48%), Query Frame = 0
Query:  156 PAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAG--MLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            P W DE++E   V++A+ +RLRKLR+  +E  ISG++Y  RLRA   K +    +WA++ +            + +G      E ++EE E       DF  + R++  LVV S +    +L PG +E ++  DAN+Q+PS   + +VQFH   G LL TAGLD+ LRFFQVDGKRN K+  +F ++ PI+ A+F+  G      +V++SGRR FFY  DL      ++  L+GREEKSLE F  SPD + +AF G +GY++LV  ++KQ  G  KMNGT R+LAF+ DG+HL+++GGD  VY WDLR+  CL +  +EG   +SAL  S G    A G++SG+VN+Y  E  LGG                  P K + +L T VD + FNHD  +LA+ S   + +L+++H+PS TVFSN+P+  + + YP ++ FSP  G +AVGN  G+VLLY+L HY+
Sbjct:  121 PVWVDEEEERTTVNIAKLNRLRKLRKEEEESVISGSEYVSRLRAHHIKLNPGT-EWAQVDS------------KSKGDRSSDDELTDEENE-------DFADVLRTNEDLVVKSSS----KLLPGHIEYSKLVDANIQDPSNGPIHSVQFH-RNGQLLLTAGLDRKLRFFQVDGKRNTKIQSIFLEECPIRKASFLPDGS-----QVILSGRRKFFYSFDLVKAKVDKIGPLVGREEKSLEFFEVSPDSKLIAFVGNEGYILLVSTKTKQLVGTLKMNGTIRSLAFAEDGQHLLSAGGDGQVYHWDLRTMTCLHKGVDEGCINSSALCTSPGGTHFAAGSDSGIVNIYNREEFLGGKR---------------KPIKTIANLTTKVDFMKFNHDSQILAICSNMKKSSLKLIHIPSYTVFSNFPSANSSLHYPRSIDFSPGGGFMAVGNAAGKVLLYKLHHYQ 538          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|357446023|ref|XP_003593289.1| (U3 small nucleolar RNA-associated-like protein [Medicago truncatula] >gi|355482337|gb|AES63540.1| U3 small nucleolar RNA-associated-like protein [Medicago truncatula])

HSP 1 Score: 379.407 bits (973), Expect = 4.183e-121
Identity = 197/464 (42.46%), Postives = 277/464 (59.70%), Query Frame = 0
Query:  154 RTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS--AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHY 615
            R P W DE++E + V++A+ +RLRKLR+  DE  ISG++Y  RLRA+ AK +    DWA+L +  G + DG               T +E +  V  G +D   + R++  LVV S +    +L PG LE ++  DAN+Q+P+   + +VQFH   G LL  AGLD+ L+FFQ+DGKRN K+  +F +D PI+ A+F+  G      +V++SGRR FFY  DL      ++  L+GREEKS+E F  SPD Q +AF G +GY++LV  +SKQ  G  KMNGT R+LAF+ DG+ L+++GGD  +Y WDLR+R C+ +  +EG    +AL  S      A G+ SGVVN+Y  E  LGG                  P K + +L T VD + FNHD  +LA+ S+    +L++VH+PS TVFSNWP     + YP  + FSP  G +AVGN  G+VLLY+L HY
Sbjct:  126 RKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDEDLISGSEYVSRLRAQHAKLNRGT-DWAQLDS--GSKMDGSSDDEL---------TDDENKAAVSRGYEDLDDILRTNEDLVVKSSS----KLLPGHLEYSKLVDANVQDPANGPINSVQFH-RNGQLLLAAGLDRKLKFFQIDGKRNTKIESIFLEDCPIRKASFLPDGS-----QVIISGRRKFFYSLDLVKARVDKIGPLLGREEKSIEVFEVSPDSQLIAFVGNEGYILLVSTKSKQLVGTLKMNGTVRSLAFTEDGQKLLSAGGDGHIYHWDLRTRTCIHKGVDEGCLNGTALCTSPVGTHFAAGSASGVVNIYNSEEFLGGKR---------------KPIKTIDNLNTEVDFMKFNHDSQILAICSRAKNSSLKLVHIPSYTVFSNWPRSNASLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHY 552          
BLAST of EWM21880.1 vs. NCBI_GenBank
Match: gi|1012024060|ref|XP_015950538.1| (U3 small nucleolar RNA-associated protein 18 homolog [Arachis duranensis])

HSP 1 Score: 379.022 bits (972), Expect = 5.142e-121
Identity = 210/556 (37.77%), Postives = 308/556 (55.40%), Query Frame = 0
Query:   81 KRQRKQNEQQRRRKVDDEAEKDDEERTLERLVFGA---------RDTEA---------LLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGDRGDGRRGRRRRGREWGGAETSEEEEEEVVEGDDDFGGLFRSSAPLVVGSGTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAASAG--MLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
            KR+R+Q+E Q+ R          E + LE  +FG+          D EA         L   +       +++E     + E + + +   R P W D+++E   +++A  +RLRKLR+  DE  ISG++Y  RLRA+  K +    DWA++        D R    R   +    E+ EE E  + +G+ D   + R++  LVV S +    +L PG +E ++  DAN+Q+PS   + +VQFH     LL   GLD+ LRFFQ+DGKRN K+  +F +D PI+ AAF+  G      +V++SGRR FFY  DL      +V  L+GREEKSLE F  SPD + +AF G +GY+ LV  ++KQ     KMNGT R+LAF+ DG+ L++ GGD  VY WDLR+  C+ +  +EG   ++AL+ S G  + A G++SG+VN+Y  E  LGG                  P K + +L T VD + FNHD  +LA+ S   + +L+++H+PS +VFSNWP     + YP  L FSP  G +AVGN  G+VLLY+L HY+
Sbjct:   45 KRKREQSEMQQVR----------EMKKLESFLFGSLYSPVEFGKEDNEAEIGDKKSSDLFFTDCSANNVLSIYEEDADISEESDDDRAAVQRKPVWVDDEEEKATINIANVNRLRKLRKEEDEDLISGSEYVSRLRAQHVKLNPGT-DWAQI--------DSRSKIDRSSDD----ESDEENEAALNQGNKDVDDILRTNEDLVVKSSS----KLLPGHVEYSKLVDANIQDPSNGPINSVQFH-RNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPDGS-----QVILSGRRKFFYSFDLVKAKVDKVGPLVGREEKSLENFEVSPDSKLVAFVGNEGYIFLVSTKTKQLVSTLKMNGTVRSLAFAEDGQQLLSGGGDGQVYHWDLRTMTCMHKGVDEGCINSTALSTSPGGKLFAAGSDSGIVNIYNREEFLGGKR---------------KPIKTIENLTTKVDFMKFNHDSQILAICSGMKKSSLKLIHIPSYSVFSNWPPPNASLSYPRCLDFSPGGGFMAVGNSAGKVLLYKLHHYQ 552          
The following BLAST results are available for this feature:
BLAST of EWM21880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102224|gb|EWM21880.1|0.000e+0100.00u3 small nucleolar rna-associated protein 18 [Nann... [more]
gi|219120925|ref|XP_002185694.1|3.350e-12443.92anthranilate synthase. anthranilate synthetase. ch... [more]
gi|168041425|ref|XP_001773192.1|2.434e-12346.79predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|502077326|ref|XP_004485620.1|1.113e-12243.01PREDICTED: U3 small nucleolar RNA-associated prote... [more]
gi|1021533584|ref|XP_016163753.1|1.431e-12237.81U3 small nucleolar RNA-associated protein 18 homol... [more]
gi|703064155|ref|XP_010087134.1|2.300e-12239.68U3 small nucleolar RNA-associated protein 18-like ... [more]
gi|1021481863|ref|XP_016184036.1|1.117e-12138.13U3 small nucleolar RNA-associated protein 18 homol... [more]
gi|1117544693|ref|XP_019449113.1|3.117e-12141.68PREDICTED: U3 small nucleolar RNA-associated prote... [more]
gi|357446023|ref|XP_003593289.1|4.183e-12142.46U3 small nucleolar RNA-associated-like protein [Me... [more]
gi|1012024060|ref|XP_015950538.1|5.142e-12137.77U3 small nucleolar RNA-associated protein 18 homol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8818rna8818Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications