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Properties
| Property Name | Value |
|---|
| Product | lysine-specific demethylase 4c isoform 1 |
| Orig transcript id | gnl|cribi|Naga_100231g8.10129.mrna |
| Orig protein id | gnl|cribi|Naga_100231g8.10129 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:220611..224837 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8809 ID=rna8809|Name=rna8809|organism=Nannochloropsis gaditana|type=mRNA|length=1897bp
GGCACAGATTATGTGCCCACATTCAACTACTTTCTCAGTCGTTGTCGCAC
GGAAGTGGCCAGGTTGTAACGATTGACTGGCGGATGGAAGCCTACAAGCG
TTCACTTCCAGGCTTAAGCGTTGCCTCCTGCCTTAAATAGGTCGACTGTC
ACTACATTCTCTCGCTTTTCCATTTCTGCTCACGAATTACCTTGATTTCT
ATTTCCGTATGACGCAGGTGTTTTGAGTGTGATAAGATATAGCGGTTGTA
CGCTTGATTTAGTGCAATATACCGAAGTAAGGGTTTCCGAAGAGAGTCTG
CAGAACTAGCTTTAGAGGGTGCGCACCATCCATCGTCTTTCACTTCAATT
TTAGACGGTCACACCCCCATGTTACGACGTGCCTCGATTGCGAGAAACTT
TCCAGTCCTCGAAAAGGTAGCAGGGGGCAGAAGAAACGCGGAACGGGGCC
AGGACAAACGGGCCATTGGTGTCGTCTTGTTAGAGTGGTCCCTGATGGTA
GCCGGCTACTACATTTTGTACCTGTCCGTCAATGGTATCGTCACCATGAT
GGACCCGGTAAAAAAGGATAGGGGCGCAGGAGTACAGACCAAAGAGGCCC
TGGGGAAAAAAGCGGACCGTTCTGAGATTGCGCGCCTGGATCTTTCGCCT
TATGAGCGGATCATTGCCCACGAGGTCTTGGACGCAGAGCAGTTGGAGGG
TGGGTTCGATACTATCGGCGGGCTAGAACAGCAAAAGAGGGAGATTTTCG
AGCTGGCCGTGCTTCCCCTGAAGCGCCCAGACCTTTTTAATAAGCGAGGG
AAGCTTTTGGGTTCGCCCAAGGGCATCCTTTTCTATGGCGCACCTGGGAC
TGGGAAGACTATGTTGGCCAAGGCCATAGCGCGGGAGTCGGGCGCAGCTT
TCATCAATTTGCGAATGAGCACGCTTACGAACAAGTACTTTGGCGAGTCC
AATAAGCTCGTTTCCGCCGTCTTCTCCCTGGCCAATAAGCTGGCGCCCAC
CATTATCTTCATCGACGAGATCGAGTCCTTCCTGCGCGTGCGGGGCCGGG
GGGACGACGCGCCCTGGATCTCGCTCAAGGCCGAGTTTATGACCCTTTGG
GACGGCATTCTCACCGAGAGCGCCGTGCCCATTATGGTGCTAGGGGCGAG
CAATAGGCCCTACGATCTCGACCCAGCCATTCTCCGCCGCCTCCCAAGAC
AATTCGAGATACCACTCCCAGACCCCAAGCAGCGGGCGGAGATTCTGCGC
TTGCTGTTGAAGGAGGAGCACGTTGACTACGAGTCGGTCAAACTAGGGGC
ATTAGCGGCCGAGACAGAGGGCTACTCAGGCAGCGACCTGAAGGAACTGT
GCCGAGCCGCCGTCATGATGCCGGTCCGCGACGTGATGTACCTGCCCGCG
GGCGGAAGTCTCACCGCCCTGGACGTGGATGGTTTGCAGGCGGAGCACCT
GCGCCAGGTCACGATGGAGGACCTTCGGAACGCCATGAAGCGCGTCAAAC
CCACGGGCCACGCCGCTCAGGACTATGAGCGGCGGGAAAGCGCCCATGCG
GAGCACACAGCCCATATCTCTCCGGCCTTCATGAATACTGCGCTCTCTCT
TCTGCTGCAAAGCTTGGTACAAGGCCATGTCCCACAGGTGCCAGGAGCGG
CCCACGGGCAGGCTGGCGGTGACGGTCGCAGTAACGGGCGAAGTGTGTAA
GCATAGCTGTGCGGATGGAGTTGGCTGGGAGGGGGGGGGAGGGGTCTGAC
GTGTGCATAGAAAATAGATTGACATTTTTGTCCCAAAAATCTGCCCGATA
GGTCCGCGGCGCTAAAATCACATAAATGCCCGGCATCCGCAGGCTTTGTC
AACCTGATTTCCTTCATTGGGGAAGAAAACGTCGACAACTTGTACTC back to topprotein sequence of rna8809 >rna8809-protein ID=rna8809-protein|Name=rna8809|organism=Nannochloropsis gaditana|type=polypeptide|length=942bp
MSSTTCPVFRPSREEFKNFSAYIDKIDSRVGNAGLCKIIPPEGWYDTPTE
AEFEGMWAERGLVVPPIKQCVSGLRGVYQLGLMDGKKMAVKDFQALAKKT
EPDQAMSYSEIERLFWRSMGPLAPPPLYGADMSGSLFRDRASGWNLSELD
NMIKLLPSNLPGITTAMLYFGMWRAMFAFHTEDMNLYSINYLHAGRPKSW
YSIPPHAQRRFESLAQSLNPQGFRTCSEFLRHKTSIFSPKVLRESGIPFH
TLVQEPGEFVVTFPASYHAGFNHGFNIAEATNFSTERWLSKGREAKVCRC
QPYSVHINMDDFAAKLAAKRAADQARVEALPNKTSKIDRKKILRRLSYIG
WMAWREQEEEARRVEEALAVKERQRLQREQTNLRRKEKVRRLNGGTLSLT
VGEGEGGGDGQSAEDSEERVGGDEGEDEEDGGPARQGLEVDLAAQKQWDF
RCRCGVAATSGAPVQSWPKGAIFQCAGCLAWSHTRCLYSKDHAPRRAFCA
GCHQVLQRLEASGADWPTGRRIKLRSKVVVCRGPRGLEEGSVTMIGEGMA
RVYFKGMKKPRKRDRAGAPGETWPKALKRPMEEWVNVMSSRFLSRERVQA
ALGQFSLQSIPTQDCAISESIKMQTPQPQKIKLEQGLYHHGDVATSAGHC
CRDQVISASSLRGSGAAQPPANTKRGMAPHPAPLLRGVPLPDAQAAVRHA
KFQKDLARSKKAFRSLFSPTRNAEAVPGVSYSRYHAAHNASIFDGEWSDD
EEGERKVLEEQCRGLPLGNGDLAGGLNGGRGCGSAHDDLSNGGHVLPKCR
GTDGATERAQEPPANSCALAQGAHVPSSSACLYPLQQHHEGAQCGALKCP
HQPSSTRPSTESSIKNASLDVSGEGSSSVAASRVSTVYECRTGTGNCANI
KLTSMDCGQGLRNAGVPAMGPGAVGATAGTVGASRGILGRGR back to topmRNA from alignment at KK037250.1:220611..224837- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna8809 ID=rna8809|Name=rna8809|organism=Nannochloropsis gaditana|type=mRNA|length=4227bp|location=Sequence derived from alignment at KK037250.1:220611..224837- (Nannochloropsis gaditana)
CTTTACGTCCGACACGAGCCGAAAACTCTTCCTGCCTAACCAGTGCATGG
TAAGCACGTCGCTGGCCACGTAAAATCATCTCCTGATCTCTGCCTGTGGG
TTGGTCCGTGGAGAAAGTACGGGGTCAGAGGCCGGGGCGAGCAACACGTA
AGTTTCCTTGAGGCTCGTCCTCCCGTTCAAGCGAGGCCCCCCGCCAGGCC
GGGCCGCAAAGATTTAGCTGGCTGCCCACTCCTGGTTCTCCATCACCACA
CAGCGAGGCATGCGCTTTATCCTTCGGACCTCGCGCATGGGCATATGGAT
GGCTCGCGGCGATGATTTTTCTTTTCGATTCCATGTTTTTGCCGCGTTTC
CTCATGAGGGTTCTCGTCTTCTTGGCAGTCAAGCTGGGCAGGAATCACCA
TCCAAGGACAATTCACAAATGCATTCCAATTACCTCCTTTAAATCTAAAC
TATATCCAGAGGATTGGGGATCGGGACGTGTGGTTTTTTTCCCATGATCA
TGCATTCTTACGGTCTTCGAGAGTAGTCGAGAAAGAGGATGGCGCATTTC
CGACTGTTTTGAGGGCACCGACTGTCTACAGCCTTCTCTTTGTCTTCCGT
TCCCGTCTCGCTTTGTCTGGCATAGAATTTGATTGGAGTAATGTATGCTT
CAGCACGATTGCGACTGAAAGTTATCTCCAAAATTTGCTTGCTCGGGTCA
ATTTCGAAGCTCATCACGAGACGTTCCTCACGTACCTCCTCAACACTCCC
AAGCAGGCGCCTGTGGATCACTTTTGAAAGATAGAACCATGTTGGAAAAA
CAGCAAAAGTATGAAGTGGAAGAAGGTTGACGTCACAGTGGTTGCGGTGG
CGTAAATTTGTGTCGGACAGAAGCAAAGCTGCAGCGTGGAGCTCGACCTG
GCTGTGGGCACGTCGCCTGTTGGGCCGTAAGTATATAAATAATATCGACT
TGCGGTAGCGATTATCAGCAGCAGCCATAGAGGTGAAGTCGGCGGTGTTT
TAAAAGGCGGGTCGTTTGAGCATGTCCTCGACGACATGTCCTGTGTTTCG
GCCCTCCAGGGAGGAGTTCAAGAACTTTTCAGCCTACATCGACAAGATTG
ACAGTAGGGTAGGAAATGCTGGGCTGTGCAAAATTATACCTCCGGAAGGC
TGGTATGATACGCCAACGGAGGCCGAGTTCGAAGGCATGTGGGCGGAGCG
AGGACTGGTGGTGCCCCCCATCAAGCAGTGTGTCTCTGGCCTCAGGGGCG
TGTACCAGTTGGGCCTGATGGACGGCAAGAAGATGGCCGTCAAGGACTTC
CAGGCCCTGGCGAAGAAGACGGAGCCCGACCAAGCCATGTCGTACTCGGA
GATCGAGCGCTTGTTCTGGCGCAGTATGGGTCCCCTGGCGCCCCCTCCTC
TCTACGGCGCGGACATGAGCGGCTCTCTCTTCCGCGATCGGGCTAGCGGG
TGGAATCTGTCGGAGCTGGACAACATGATTAAGCTGCTGCCTTCCAATCT
GCCCGGTATCACCACGGCCATGCTGTACTTTGGGATGTGGCGCGCCATGT
TTGCCTTCCATACGGAGGACATGAACTTGTACAGCATCAACTACCTTCAC
GCGGGCCGGCCCAAGAGCTGGTATTCCATCCCCCCCCACGCTCAAAGGCG
CTTTGAGAGTCTGGCGCAGTCCCTGAATCCCCAAGGCTTCCGGACCTGCT
CGGAGTTTTTGCGTCACAAAACCAGCATATTCTCGCCCAAGGTGCTCCGG
GAGTCCGGCATTCCCTTCCACACCCTGGTGCAGGAGCCGGGGGAGTTCGT
CGTCACTTTTCCTGCTTCCTACCACGCAGGCTTCAACCACGGATTCAACA
TTGCGGAGGCGACAAATTTCAGCACGGAGCGATGGTTGTCCAAGGGCCGC
GAGGCCAAGGTTTGCCGGTGCCAGCCCTACTCGGTCCACATCAATATGGA
CGACTTCGCTGCCAAGCTGGCCGCCAAACGTGCCGCAGACCAAGCCCGCG
TGGAAGCGCTGCCGAACAAAACGTCCAAAATAGACCGGAAAAAGATCTTG
AGGCGTTTGAGCTACATAGGGTGGATGGCCTGGCGGGAGCAAGAGGAAGA
AGCGAGGCGAGTGGAGGAAGCTTTGGCGGTCAAGGAGCGTCAGCGCTTAC
AGCGGGAGCAAACGAATTTGCGTCGGAAAGAGAAGGTTCGACGGCTGAAC
GGGGGGACGCTTAGCCTGACTGTGGGGGAAGGGGAAGGTGGTGGGGATGG
CCAGTCTGCAGAAGACTCGGAGGAGCGCGTGGGAGGAGACGAGGGGGAGG
ACGAGGAGGACGGCGGGCCCGCCCGCCAAGGTCTCGAGGTGGACCTAGCG
GCGCAGAAGCAGTGGGACTTTCGGTGTCGCTGCGGGGTGGCCGCAACGAG
TGGGGCACCAGTGCAGAGCTGGCCGAAAGGCGCCATCTTCCAGTGTGCGG
GCTGCTTGGCCTGGTCGCACACGCGCTGCCTATACAGCAAGGACCACGCC
CCCCGCCGGGCGTTCTGTGCAGGCTGTCATCAGGTATTGCAGCGATTGGA
AGCATCGGGTGCGGATTGGCCCACTGGGCGGCGGATCAAGCTGCGGTCAA
AAGTGGTGGTGTGTCGGGGCCCGCGAGGGCTGGAGGAGGGAAGCGTGACG
ATGATCGGAGAGGGGATGGCCCGAGTCTACTTTAAAGGAATGAAAAAGCC
AAGAAAACGCGATAGGGCAGGCGCGCCGGGAGAGACATGGCCGAAGGCGC
TCAAGAGGCCTATGGAAGAATGGGTAAACGTGATGTCCAGTCGCTTTCTG
AGTCGAGAGCGAGTCCAAGCAGCCCTTGGCCAATTTAGCCTCCAGTCTAT
TCCGACACAAGACTGCGCAATCAGTGAATCTATAAAGATGCAAACGCCGC
AACCTCAGAAGATAAAGCTGGAGCAGGGACTTTATCATCACGGAGATGTT
GCCACGAGTGCAGGGCATTGCTGCAGGGATCAGGTAATTTCCGCGTCGTC
ACTTAGAGGGTCAGGTGCGGCGCAGCCCCCAGCAAATACCAAGCGTGGCA
TGGCTCCCCATCCAGCTCCCTTGCTTCGGGGCGTCCCGTTGCCTGACGCC
CAGGCAGCTGTGCGCCACGCCAAATTTCAGAAGGACCTGGCTAGAAGCAA
GAAGGCTTTCCGCAGCCTCTTTTCCCCCACTCGCAATGCGGAAGCTGTCC
CAGGGGTGTCGTACAGTCGATATCATGCCGCGCACAATGCATCCATCTTT
GACGGAGAGTGGTCCGACGACGAGGAGGGAGAAAGGAAAGTGCTAGAGGA
GCAGTGCAGGGGGCTGCCACTGGGCAACGGCGACCTCGCAGGTGGGCTGA
ACGGGGGCCGAGGGTGTGGGAGTGCGCACGACGACTTGTCGAATGGCGGT
CATGTCCTTCCAAAATGTCGTGGAACCGACGGTGCGACCGAGCGAGCGCA
GGAGCCACCTGCCAACTCCTGCGCCCTGGCTCAAGGCGCTCACGTCCCTT
CCTCGTCGGCCTGCCTATACCCGCTACAACAGCACCATGAAGGAGCGCAA
TGCGGTGCTCTCAAATGCCCGCATCAACCATCAAGCACAAGGCCGTCCAC
AGAGTCTTCCATTAAGAATGCCAGCTTGGATGTGTCAGGCGAGGGAAGTT
CTTCCGTTGCGGCGTCGCGAGTCAGCACCGTGTACGAGTGCCGTACAGGA
ACGGGAAACTGTGCGAACATAAAGTTGACGTCAATGGACTGCGGCCAGGG
CTTGCGAAATGCGGGGGTTCCGGCGATGGGGCCCGGGGCAGTCGGTGCTA
CCGCCGGGACAGTAGGGGCCTCTCGCGGCATATTGGGACGAGGGCGATGA
CTGTGACCAGGTTGCGTCAGGGGAGCGTCAGGCCTTGGAACGCTTGATGG
CCGTACAGAGGGCCAGACGATTCAATCTATCAAAGAAAGAAATCAAAGAG
AGGTGTGCTGTGCATATTGCGTATTTGTATAGAAACTGCGCTTCAGAAAC
GAGGAAAGGCTCCAATAGGCGGCAGCGATACCTTAGAACGTCAGCATATG
GTGCAAGAGAGGGTAAAAGAAATTGAGTCGGGGCAGTAGAAGAACGTAAA
GAAAAATGACGATGATATCCAATGTTAGGCCTCGGATGAATTGATGCGCT
GCAGGTACTCTCGGGCAAAGGATTGTGGGCACACCAAAGAAAAAACTAAA
GGCTGGCTTCTGATGCCAGCGACCAAG back to topCoding sequence (CDS) from alignment at KK037250.1:220611..224837- >rna8809 ID=rna8809|Name=rna8809|organism=Nannochloropsis gaditana|type=CDS|length=2829bp|location=Sequence derived from alignment at KK037250.1:220611..224837- (Nannochloropsis gaditana)
ATGTCCTCGACGACATGTCCTGTGTTTCGGCCCTCCAGGGAGGAGTTCAA
GAACTTTTCAGCCTACATCGACAAGATTGACAGTAGGGTAGGAAATGCTG
GGCTGTGCAAAATTATACCTCCGGAAGGCTGGTATGATACGCCAACGGAG
GCCGAGTTCGAAGGCATGTGGGCGGAGCGAGGACTGGTGGTGCCCCCCAT
CAAGCAGTGTGTCTCTGGCCTCAGGGGCGTGTACCAGTTGGGCCTGATGG
ACGGCAAGAAGATGGCCGTCAAGGACTTCCAGGCCCTGGCGAAGAAGACG
GAGCCCGACCAAGCCATGTCGTACTCGGAGATCGAGCGCTTGTTCTGGCG
CAGTATGGGTCCCCTGGCGCCCCCTCCTCTCTACGGCGCGGACATGAGCG
GCTCTCTCTTCCGCGATCGGGCTAGCGGGTGGAATCTGTCGGAGCTGGAC
AACATGATTAAGCTGCTGCCTTCCAATCTGCCCGGTATCACCACGGCCAT
GCTGTACTTTGGGATGTGGCGCGCCATGTTTGCCTTCCATACGGAGGACA
TGAACTTGTACAGCATCAACTACCTTCACGCGGGCCGGCCCAAGAGCTGG
TATTCCATCCCCCCCCACGCTCAAAGGCGCTTTGAGAGTCTGGCGCAGTC
CCTGAATCCCCAAGGCTTCCGGACCTGCTCGGAGTTTTTGCGTCACAAAA
CCAGCATATTCTCGCCCAAGGTGCTCCGGGAGTCCGGCATTCCCTTCCAC
ACCCTGGTGCAGGAGCCGGGGGAGTTCGTCGTCACTTTTCCTGCTTCCTA
CCACGCAGGCTTCAACCACGGATTCAACATTGCGGAGGCGACAAATTTCA
GCACGGAGCGATGGTTGTCCAAGGGCCGCGAGGCCAAGGTTTGCCGGTGC
CAGCCCTACTCGGTCCACATCAATATGGACGACTTCGCTGCCAAGCTGGC
CGCCAAACGTGCCGCAGACCAAGCCCGCGTGGAAGCGCTGCCGAACAAAA
CGTCCAAAATAGACCGGAAAAAGATCTTGAGGCGTTTGAGCTACATAGGG
TGGATGGCCTGGCGGGAGCAAGAGGAAGAAGCGAGGCGAGTGGAGGAAGC
TTTGGCGGTCAAGGAGCGTCAGCGCTTACAGCGGGAGCAAACGAATTTGC
GTCGGAAAGAGAAGGTTCGACGGCTGAACGGGGGGACGCTTAGCCTGACT
GTGGGGGAAGGGGAAGGTGGTGGGGATGGCCAGTCTGCAGAAGACTCGGA
GGAGCGCGTGGGAGGAGACGAGGGGGAGGACGAGGAGGACGGCGGGCCCG
CCCGCCAAGGTCTCGAGGTGGACCTAGCGGCGCAGAAGCAGTGGGACTTT
CGGTGTCGCTGCGGGGTGGCCGCAACGAGTGGGGCACCAGTGCAGAGCTG
GCCGAAAGGCGCCATCTTCCAGTGTGCGGGCTGCTTGGCCTGGTCGCACA
CGCGCTGCCTATACAGCAAGGACCACGCCCCCCGCCGGGCGTTCTGTGCA
GGCTGTCATCAGGTATTGCAGCGATTGGAAGCATCGGGTGCGGATTGGCC
CACTGGGCGGCGGATCAAGCTGCGGTCAAAAGTGGTGGTGTGTCGGGGCC
CGCGAGGGCTGGAGGAGGGAAGCGTGACGATGATCGGAGAGGGGATGGCC
CGAGTCTACTTTAAAGGAATGAAAAAGCCAAGAAAACGCGATAGGGCAGG
CGCGCCGGGAGAGACATGGCCGAAGGCGCTCAAGAGGCCTATGGAAGAAT
GGGTAAACGTGATGTCCAGTCGCTTTCTGAGTCGAGAGCGAGTCCAAGCA
GCCCTTGGCCAATTTAGCCTCCAGTCTATTCCGACACAAGACTGCGCAAT
CAGTGAATCTATAAAGATGCAAACGCCGCAACCTCAGAAGATAAAGCTGG
AGCAGGGACTTTATCATCACGGAGATGTTGCCACGAGTGCAGGGCATTGC
TGCAGGGATCAGGTAATTTCCGCGTCGTCACTTAGAGGGTCAGGTGCGGC
GCAGCCCCCAGCAAATACCAAGCGTGGCATGGCTCCCCATCCAGCTCCCT
TGCTTCGGGGCGTCCCGTTGCCTGACGCCCAGGCAGCTGTGCGCCACGCC
AAATTTCAGAAGGACCTGGCTAGAAGCAAGAAGGCTTTCCGCAGCCTCTT
TTCCCCCACTCGCAATGCGGAAGCTGTCCCAGGGGTGTCGTACAGTCGAT
ATCATGCCGCGCACAATGCATCCATCTTTGACGGAGAGTGGTCCGACGAC
GAGGAGGGAGAAAGGAAAGTGCTAGAGGAGCAGTGCAGGGGGCTGCCACT
GGGCAACGGCGACCTCGCAGGTGGGCTGAACGGGGGCCGAGGGTGTGGGA
GTGCGCACGACGACTTGTCGAATGGCGGTCATGTCCTTCCAAAATGTCGT
GGAACCGACGGTGCGACCGAGCGAGCGCAGGAGCCACCTGCCAACTCCTG
CGCCCTGGCTCAAGGCGCTCACGTCCCTTCCTCGTCGGCCTGCCTATACC
CGCTACAACAGCACCATGAAGGAGCGCAATGCGGTGCTCTCAAATGCCCG
CATCAACCATCAAGCACAAGGCCGTCCACAGAGTCTTCCATTAAGAATGC
CAGCTTGGATGTGTCAGGCGAGGGAAGTTCTTCCGTTGCGGCGTCGCGAG
TCAGCACCGTGTACGAGTGCCGTACAGGAACGGGAAACTGTGCGAACATA
AAGTTGACGTCAATGGACTGCGGCCAGGGCTTGCGAAATGCGGGGGTTCC
GGCGATGGGGCCCGGGGCAGTCGGTGCTACCGCCGGGACAGTAGGGGCCT
CTCGCGGCATATTGGGACGAGGGCGATGA back to top
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