rna8789, rna8789 (mRNA) Nannochloropsis gaditana

Overview
Namerna8789
Unique Namerna8789
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1143
Alignment locationKK037250.1:164594..165587 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100070g14.4239.mrna
Orig protein idgnl|cribi|Naga_100070g14.4239
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:164594..165587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100070g14gene8520Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8789rna8789-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21925.1cds8759Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8789 ID=rna8789|Name=rna8789|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp
ATGTCATTCAGAAAGATTTTTCGCGGGTTTAGCGTTCTGGCTGCGGTTCT
TGTCTGCTTCAGTGGCCGTTCTGGAAGCGCTCCCGTGGGCTTTGTCACAT
CCCCCGTACACCACACTGCCGCCCTTAGTTTCAATGCGATAGGGACAAGG
CCTGGACTGCGCCAATCAGCATTCATTTTACAAGCGTCCGAGTCTCATGA
ACGTGAGGGGCAGCACGCGCCGCTCTATTTCTGGAAAGAACAACATTCGG
CCACCATCGCTGCTTCCAAGCAGCTACATATGCTAACGAAACATAGTGAA
GAGAAACATGGGGCAGTGGAGAGGAGTCTGGGGGGCGTGATTGTGAAAGG
GTTCAAAAAAGTTGGGGCCGTGGGATTGGCCGTGGCATTGACCGGTATCG
TTCTTATCGCGGGTATGCCGATTGGTGCCCATGCCGCCTCTGCTTCACTG
GCTGATTTGACGGCCGGCGCGTCGCTATCTTACAACAATGTTGTGGCAAA
GCTGGCGGCCTCAGGCTTTCTGCAGGCCTTCTCGCTCGTCTTCGTGTCGG
AGATCGGGGACAAAACTTTTTTCATCGCGGGCTTACTGGCCATGAAGACC
TCGAGGCTTATTTCTTTCACGGGGTCTATGGCAGCCTTATCTGTAATGAC
AATCATCTCTGTGCTCATTGGGCAGGCCTTCCACGCCATTCCGCAAGGGC
TGGGTGGCGGCTTCAAGTTCGACCAATGGGTGGCCGTGGCGGCCTTCTCA
TACTTTGGATTGAAGACTCTCAAGGACTCGTACGACATGGCAGACGGAGA
CTCGTCTGGCGTTGACGAAGAAAGGGCGGAGGCTGAAAAGGCGGTTCAGG
AATCCAGCGCTCCCGAGCGGAGGACCCCCTGGGGCACAATTCTCCAAATA
TTTTCACTTGTGTTCGCTGCTGAATTTGGTGACCGCTCCTTCCTCTCCAC
TATCGCCTTAGGCGCAGCTCAAAATCCTTTTTCTGTCGCCACTGGAGCCA
TCGGTGCTCACGCCACCGCGACAGGCATAGCTGTGGCCAGTGGAGCTTTT
TTATCAAAATACTTCTCGGAGAAGCTCATCGGGTACATTGGGGGCACGCT
TTTTATTATCTTTGCCCTCACGACTGCTCTGGGTATTTTCTAG
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protein sequence of rna8789

>rna8789-protein ID=rna8789-protein|Name=rna8789|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MASFDSRQLLGSSFIFWIRQIPLLFLLVQPIYGGLQRHMRDAAFDTSALV
VDGIPSGQEPPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFC
RFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSI
APGSINGNQIIYESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGS
TRFVEDPRPTLTTWLIGDHSVSEAPDRHSFRSITQERGTKTIKNNSKNIL
SSVQSREYRHALHILFHTRK
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mRNA from alignment at KK037250.1:164594..165587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8789 ID=rna8789|Name=rna8789|organism=Nannochloropsis gaditana|type=mRNA|length=994bp|location=Sequence derived from alignment at KK037250.1:164594..165587+ (Nannochloropsis gaditana)
ATGGCGTCCTTCGACTCAAGACAACTTCTAGGGTCCTCATTTATTTTTTG
GATACGACAGATTCCACTTCTATTCTTGCTTGTTCAACCTATCTATGGAG
GGCTGCAGCGTCACATGCGTGATGCAGCCTTCGACACCAGTGCGCTCGTT
GTAGATGGCATACCTTCCGGTCAAGAACCTCCCGCTACAGTTAACGTGGA
CTATCCCTTTCCGTACATAAATGGCCACCCCATCGACTCATGTTTATCCG
TGCTAGGAACGTCAGGGGACTGCGGTAGGATGGCAGCTGATTTCTTTTGC
CGCTTCCAAAACTGCGAGGCTGCCGTTTCATTCCAGGAGAGCTCCAGCGA
CCGCGGTCCTACATGGATTGCCGGCGACGAAACTATTCGTGACGCGGGGG
GAAAGTCGTTTGACAATATAACCTGTCAATGCTCTGTGCCAAATTCCATC
GCGCCAGGTTCGATTAACGGAAATCAAATAATTTACGAAAGCCCACGAAT
CCTGAACCATCCCGTAGACTTCTGCTTGGAAAAGAATAATGTGGCTTGCG
GTAAGCCTGCAGCCGACGCTTTCTGCGAGTCTTTCGGTAACTCAGGTAGT
ACACGATTTGTAGAGGACCCTAGACCTACATTGACGACGTGGCTTATTGG
CGATCATAGTGTGAGTGAGGCGCCCGATCGTCATTCATTCAGGTACGTTT
GACTTGCGAGCTGACAATGTTTGACAATAACCAGTGGAGAGGCTTCTTAG
AAGACATACTTACTGCCCTTTGATTTAATTCTTTGTCTACgcattctctc
cttcttcttcattgGCCGCAGAAGCATCACGTGTGTGTAGTGTGAAGCCG
TCGCAGGAAGGCGGGTAGAAGCGAGCATGCAGTCAAGAGCGAGGGACCAA
GACGATCAAGAATAACTCGAAAAACATTCTCTCATCAGTGCAGAGTAGGG
AGTATCGGCACGCACTCCATATTCTTTTTCACACACGAAAATAG
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Coding sequence (CDS) from alignment at KK037250.1:164594..165587+

>rna8789 ID=rna8789|Name=rna8789|organism=Nannochloropsis gaditana|type=CDS|length=2439bp|location=Sequence derived from alignment at KK037250.1:164594..165587+ (Nannochloropsis gaditana)
ATGGCGTCCTTCGACTCAAGACAACTTCTAGGGTCCTCATTTATTTTTTG
GATACGACAGATTCCACTTCTATTCTTGCTTGTTCAACCTATCTATGGAG
GGCTGCAGCGTCACATGCGTGATGCAGCCTTCGACACCAGTGCGCTCGTT
GTAGATGGCATACCTTCCGGTCAAGAACCTCCCGCTACAGTTAACGTGGA
CTATCCCTTTCCGTACATAAATGGCCACCCCATCGACTCATGTTTATCCG
TGCTAGGAACGTCAGGGGACTGCGGTAGGATGGCAGCTGATTTCTTTTGC
CGCTTCCAAAACTGCGAGGCTGCCGTTTCATTCCAGGAGAGCTCCAGCGA
CCGCGGTCCTACATGGATTGCCGGCGACGAAACTATTCGTGACGCGGGGG
GAAAGTCGTTTGACAATATAACCTGTCAATGCTCTGTGCCAAATTCCATC
GCGCCAGGTTCGATTAACGGAAATCAAATAATTTACGAAAGCCCACGAAT
CCTGAACCATCCCGTAGACTTCTGCTTGGAAAAGAATAATGTGGCTTGCG
GTAAGCCTGCAGCCGACGCTTTCTGCGAGTCTTTCGGTAACTCAGGTAGT
ACACGATTTGTAGAGGACCCTAGACCTACATTGACGACGTGGCTTATTGG
CGATCATAGTGTGAGTGAGGCGCCCGATCGTCATTCATTCAGAAGCATCA
CTCAAGAGCGAGGGACCAAGACGATCAAGAATAACTCGAAAAACATTCTC
TCATCAGTGCAGAGTAGGGAGTATCGGCACGCACTCCATATTCTTTTTCA
CACACGAAAATAGATGGCGTCCTTCGACTCAAGACAACTTCTAGGGTCCT
CATTTATTTTTTGGATACGACAGATTCCACTTCTATTCTTGCTTGTTCAA
CCTATCTATGGAGGGCTGCAGCGTCACATGCGTGATGCAGCCTTCGACAC
CAGTGCGCTCGTTGTAGATGGCATACCTTCCGGTCAAGAACCTCCCGCTA
CAGTTAACGTGGACTATCCCTTTCCGTACATAAATGGCCACCCCATCGAC
TCATGTTTATCCGTGCTAGGAACGTCAGGGGACTGCGGTAGGATGGCAGC
TGATTTCTTTTGCCGCTTCCAAAACTGCGAGGCTGCCGTTTCATTCCAGG
AGAGCTCCAGCGACCGCGGTCCTACATGGATTGCCGGCGACGAAACTATT
CGTGACGCGGGGGGAAAGTCGTTTGACAATATAACCTGTCAATGCTCTGT
GCCAAATTCCATCGCGCCAGGTTCGATTAACGGAAATCAAATAATTTACG
AAAGCCCACGAATCCTGAACCATCCCGTAGACTTCTGCTTGGAAAAGAAT
AATGTGGCTTGCGGTAAGCCTGCAGCCGACGCTTTCTGCGAGTCTTTCGG
TAACTCAGGTAGTACACGATTTGTAGAGGACCCTAGACCTACATTGACGA
CGTGGCTTATTGGCGATCATAGTGTGAGTGAGGCGCCCGATCGTCATTCA
TTCAGAAGCATCACTCAAGAGCGAGGGACCAAGACGATCAAGAATAACTC
GAAAAACATTCTCTCATCAGTGCAGAGTAGGGAGTATCGGCACGCACTCC
ATATTCTTTTTCACACACGAAAATAGATGGCGTCCTTCGACTCAAGACAA
CTTCTAGGGTCCTCATTTATTTTTTGGATACGACAGATTCCACTTCTATT
CTTGCTTGTTCAACCTATCTATGGAGGGCTGCAGCGTCACATGCGTGATG
CAGCCTTCGACACCAGTGCGCTCGTTGTAGATGGCATACCTTCCGGTCAA
GAACCTCCCGCTACAGTTAACGTGGACTATCCCTTTCCGTACATAAATGG
CCACCCCATCGACTCATGTTTATCCGTGCTAGGAACGTCAGGGGACTGCG
GTAGGATGGCAGCTGATTTCTTTTGCCGCTTCCAAAACTGCGAGGCTGCC
GTTTCATTCCAGGAGAGCTCCAGCGACCGCGGTCCTACATGGATTGCCGG
CGACGAAACTATTCGTGACGCGGGGGGAAAGTCGTTTGACAATATAACCT
GTCAATGCTCTGTGCCAAATTCCATCGCGCCAGGTTCGATTAACGGAAAT
CAAATAATTTACGAAAGCCCACGAATCCTGAACCATCCCGTAGACTTCTG
CTTGGAAAAGAATAATGTGGCTTGCGGTAAGCCTGCAGCCGACGCTTTCT
GCGAGTCTTTCGGTAACTCAGGTAGTACACGATTTGTAGAGGACCCTAGA
CCTACATTGACGACGTGGCTTATTGGCGATCATAGTGTGAGTGAGGCGCC
CGATCGTCATTCATTCAGAAGCATCACTCAAGAGCGAGGGACCAAGACGA
TCAAGAATAACTCGAAAAACATTCTCTCATCAGTGCAGAGTAGGGAGTAT
CGGCACGCACTCCATATTCTTTTTCACACACGAAAATAG
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Synonyms
Publications